mRNA_S-dermatodea_contig10429.311.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10429.311.1
Unique NamemRNA_S-dermatodea_contig10429.311.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10429.311.1 vs. uniprot
Match: A0A6H5KGT3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.810e-9
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 3 
Query:  447 FFMNGRFNIRVRQYTRRGLHTFIEDEDIQAMARESLTGKIFTRKKGEPQLRVQDF 611
            F +N RF IRVRQ ++ GL +FI+DED++ + RE L GKI+ RK GEPQ+RV+DF
Sbjct:  401 FLVNTRFKIRVRQRSKHGLLSFIDDEDLREVMREWLDGKIYGRKNGEPQMRVRDF 455
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10429.311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGT3_9PHAE1.810e-958.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10429contigS-dermatodea_contig10429:3265..5016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size671
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10429.311.1prot_S-dermatodea_contig10429.311.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10429 3265..3968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.2307985-CDS-S-dermatodea_contig10429:3264..33191622924157.2307985-CDS-S-dermatodea_contig10429:3264..3319Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10429 3265..3319 -
1694079056.7548563-CDS-S-dermatodea_contig10429:3264..33191694079056.7548563-CDS-S-dermatodea_contig10429:3264..3319Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10429 3265..3319 -
1622924157.2405825-CDS-S-dermatodea_contig10429:3714..39681622924157.2405825-CDS-S-dermatodea_contig10429:3714..3968Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10429 3715..3968 -
1694079056.7645082-CDS-S-dermatodea_contig10429:3714..39681694079056.7645082-CDS-S-dermatodea_contig10429:3714..3968Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10429 3715..3968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.2499185-UTR-S-dermatodea_contig10429:3968..39761622924157.2499185-UTR-S-dermatodea_contig10429:3968..3976Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10429 3969..3976 -
1694079056.7774506-UTR-S-dermatodea_contig10429:3968..39761694079056.7774506-UTR-S-dermatodea_contig10429:3968..3976Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10429 3969..3976 -
1622924157.2618577-UTR-S-dermatodea_contig10429:4160..42821622924157.2618577-UTR-S-dermatodea_contig10429:4160..4282Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10429 4161..4282 -
1694079056.7870407-UTR-S-dermatodea_contig10429:4160..42821694079056.7870407-UTR-S-dermatodea_contig10429:4160..4282Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10429 4161..4282 -
1622924157.2724626-UTR-S-dermatodea_contig10429:4784..50161622924157.2724626-UTR-S-dermatodea_contig10429:4784..5016Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10429 4785..5016 -
1694079056.7976897-UTR-S-dermatodea_contig10429:4784..50161694079056.7976897-UTR-S-dermatodea_contig10429:4784..5016Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10429 4785..5016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10429.311.1

>prot_S-dermatodea_contig10429.311.1 ID=prot_S-dermatodea_contig10429.311.1|Name=mRNA_S-dermatodea_contig10429.311.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
MDPTLSSIAKLQDTRRVFLGKLYELGIVFFMNGRFNIRVRQYTRRGLHTF
IEDEDIQAMARESLTGKIFTRKKGEPQLRVQDFHRRKSEAKAQRDKAKSY
NQ*
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mRNA from alignment at S-dermatodea_contig10429:3265..5016-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10429.311.1 ID=mRNA_S-dermatodea_contig10429.311.1|Name=mRNA_S-dermatodea_contig10429.311.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1752bp|location=Sequence derived from alignment at S-dermatodea_contig10429:3265..5016- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTAACACACGTCGAAGCGAAAGGGCACCCATGCGGGACCGGGGCGAGGAC
ACAATCAAGCGCTCTTCGTCCGTCATCAACAAGCGCAGCGCCAAGAAAGG
GACGGCTTTGAAGCGGGAGGAGAAGGTCGAGAGGAAAGTGGCGAACGAGC
TGCAGATCAGAGAGCGGCGCGTGAGGGGGCGCAGACAAGACGATGGCAGG
TCTTGCTGAACGCCCGAGATCTTCTGCTGCCAGTAAGTGCATACCTCCGT
ATTTCGTGGTTGCCGGTACTCACATGTTTGTTTGAGCCCCCCCCCAAAAA
CCAATCCGCCTTGAATAGGGAAGTACTATCCTTGGAAAATGTTTGCCGCT
CTCGAAAATATCTTTGGGGCTCATTGCTGCACGGTATTGAACAATACAGA
TCTTGCTGCATTCAATATTACAGCTAGTCGCCTTGTGCGGAGTACTAGGG
TTTTGCTCACCTCGATCTCCACGTCTTTACCCATTTGCGTGTTGGGTGGC
GGTGATGTAAGAGACATCACCGATGCAATGTGAAATGTTCTGGCGTTTTT
TTAGGGGAATATTTTAGCGTTTGAGCATCAGAACTACTGTAACTGCTGCA
CCCCATGAATCCAAGTCCAAACTGGCGCTCATGTTTGCGTGCGATGCCCA
TAGTAATTCGTGGTGGATTTGAAGCCACCACAGGGATATTGCCGCCTGTT
CTCAGTTCTCCGTACGCTTTTCCCTCGTGTTCAGGCTGTTCGTCGTCTCC
ACTTCGACGGCATTGTGGAAGATCCGAAGAAGATGCTGGCCACGAGTGAC
GGGAAAACGATGGCCTTTCGGCAGGCGGCCGCCAGAAGCTGCTTCGTCGA
TCTAGAGTGAGTACAGTATAGTACGGCACGCGCGAAAGTTGATGGTAACT
GCTGCGATGTATGTATCATACATGTGTACTAGTGTTCAGATCTATTGGCG
TGTGTACTACACCGCATTCAAGTATATATATTACCATATTTCATGCTGAT
CGTTACCTTGGCTTCCCCTTTCCTCTCCTCAAACGAGAAGGCTGGAACAT
GGACCCCACGCTCTCAAGCATAGCTAAACTGCAGGATACACGGCGGGTGT
TTTTGGGGAAACTGTACGAGCTTGGGATCGTCTTTTTTATGAACGGCCGG
TTCAATATCCGCGTACGTCAGTACACCAGGCGCGGTCTGCACACCTTCAT
CGAGGACGAGGACATCCAAGCGATGGCGCGGGAGTCCCTGACTGGGAAAA
TCTTCACTCGTAAGAAGGGAGAGCCGCAGCTTCGTGTCCAAGACTTCCAC
AGGTACTTCGTATAAGTTGATCAAGTCTATAGTACAGAGCGTGGTGGAGT
GATGTGCTTGTAAAATAGTTGGGCGTTCTTTACGCTACCTGCTCCGTCCA
GTACGATGCGTAAAGTAATAACCAACATATTATCTAATTTCGGTAAAAAA
GCAGAAAACACCGACGTGCACAATCCCAAAATAAGTCACGAGCATTTAAA
TAATGTACCACGAAAGGTATATCAACGAGGCTTCCAAAGGTGGGCGTATG
CACGTTTTTGTTTGTCGTATACCTACACGCTCTCTGGGCGCAACGGAAGA
GCCTCATGCATCCTCGCGATTCATGGAAGGAGGCAATTTCGTACATATAA
TATAATACGTGTAAAACATGGCGTTATGTATGCTGTTGTTATCAAAGGCG
GAAGTCTGAGGCCAAAGCGCAGCGGGACAAGGCCAAGAGCTACAACCAGT
GA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10429:3265..5016-

>mRNA_S-dermatodea_contig10429.311.1 ID=mRNA_S-dermatodea_contig10429.311.1|Name=mRNA_S-dermatodea_contig10429.311.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig10429:3265..5016- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACCCCACGCTCTCAAGCATAGCTAAACTGCAGGATACACGGCGGGT
GTTTTTGGGGAAACTGTACGAGCTTGGGATCGTCTTTTTTATGAACGGCC
GGTTCAATATCCGCGTACGTCAGTACACCAGGCGCGGTCTGCACACCTTC
ATCGAGGACGAGGACATCCAAGCGATGGCGCGGGAGTCCCTGACTGGGAA
AATCTTCACTCGTAAGAAGGGAGAGCCGCAGCTTCGTGTCCAAGACTTCC
ACAGATGGACCCCACGCTCTCAAGCATAGCTAAACTGCAGGATACACGGC
GGGTGTTTTTGGGGAAACTGTACGAGCTTGGGATCGTCTTTTTTATGAAC
GGCCGGTTCAATATCCGCGTACGTCAGTACACCAGGCGCGGTCTGCACAC
CTTCATCGAGGACGAGGACATCCAAGCGATGGCGCGGGAGTCCCTGACTG
GGAAAATCTTCACTCGTAAGAAGGGAGAGCCGCAGCTTCGTGTCCAAGAC
TTCCACAGGCGGAAGTCTGAGGCCAAAGCGCAGCGGGACAAGGCCAAGAG
CTACAACCAGTGAGCGGAAGTCTGAGGCCAAAGCGCAGCGGGACAAGGCC
AAGAGCTACAACCAGTGA
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