mRNA_S-dermatodea_contig104.292.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: D8LBD7_ECTSI (GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD7_ECTSI) HSP 1 Score: 360 bits (925), Expect = 6.650e-122 Identity = 191/281 (67.97%), Postives = 222/281 (79.00%), Query Frame = 3
Query: 84 MNRALRSLCAMAAMLAANEVCGFVTPAGVSSLAGRTPVARVATSPSRSSRRWEKQQQMDAGNVDASGAGDKGTGTFQSWVQKAAGRLGRGPFSRAAKSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVASP 926
M+ A+RSL A+AAMLAANE C FV PAG++SLAGR+ A TS RSSRRW+K QQ+DAGN D +G++ G F SWV+K AGR GRGPFSRAAK KD V+DLLNS+AFL KKV+ML+KQI T+ +I A+ +A W EWGPQV RLEKEF+ LK RGGEA T+AY+KGKAEA N IL V D FERAA AISAETDGE+AVVAYYKD Y M+ CLEGL L EV+ IGA FDYNIHNAIM E+T+EF ED VC+VFQKGY+ G+TLVRPAMVAVA P
Sbjct: 1 MSCAMRSLFAVAAMLAANEACAFVHPAGLTSLAGRSVAAPACTSVERSSRRWDKAQQLDAGNGDGGSSGEQPAGPFSSWVKKTAGRFGRGPFSRAAK-KDEVDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVAVP 280
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A835ZCF7_9STRA (GrpE protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF7_9STRA) HSP 1 Score: 176 bits (447), Expect = 2.880e-50 Identity = 97/186 (52.15%), Postives = 120/186 (64.52%), Query Frame = 3
Query: 366 AAKSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
AA V+DLL S AFL KKV++LKKQ+ TE EI A EA W+EWGPQ+ RLE EF LK R +A ++ K +A IL V D FERA+ AI A+TDGEKAVVAYYK VY M + LG++ V +G FDYN+H A+M + + E ED V Q F KG+ G TL+RPAMVAV+S
Sbjct: 56 AADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSS 241
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: H6WB81_VAULI (GrpE protein homolog n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB81_VAULI) HSP 1 Score: 158 bits (399), Expect = 4.420e-43 Identity = 85/184 (46.20%), Postives = 115/184 (62.50%), Query Frame = 3
Query: 372 KSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
+SK +DLL + FL KK+++L KQI E EI A LEA W+EWGPQ+ RLE+EF +++R +A K + EIL V+D F RA+ AIS T+GE AVV YYK +Y M LG+K + +G FDYN+H A+M +S+ EF ED VC KG+ G+ L+RPAMVAV++
Sbjct: 62 RSKANDDDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVMRQSS-EFDEDIVCLELTKGFMVGKELIRPAMVAVST 244
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A448ZSA7_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA7_9STRA) HSP 1 Score: 139 bits (351), Expect = 5.990e-36 Identity = 78/201 (38.81%), Postives = 118/201 (58.71%), Query Frame = 3
Query: 333 AGRLGRGPFSRAAKSKDG-----VEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVA 920
A RLG ++ DG +D+L+S AFLK+KV++L+ I TE ++ A + A +EWGPQ+ LE+E+ ++ R E + K IL + D F+RA+ I AET+ ++A+ A YK Y ++ + +G+ EVE +G +FDY +H A+M +E+ E VCQ FQKG+ GE+L+RPAMVAVA
Sbjct: 47 ATRLGMAEEETTEETSDGEDAPAADDILSSPAFLKRKVEVLESDIAKTEEDLVAATERKEIAKEEWGPQLEALEREYTNIQQRMTEQNQEGDSDAKVRVVKGILDLLDNFDRASGVIVAETEADQAIEAAYKQAYQDILDKFKEMGVTEVETVGTEFDYELHQAVMQMPGSEYEEGFVCQEFQKGFIMGESLIRPAMVAVA 247
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S2V1T8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T8_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.060e-35 Identity = 66/184 (35.87%), Postives = 114/184 (61.96%), Query Frame = 3
Query: 372 KSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
K + V+DLLN+ AFL+KK++ L K + + +I +A+ EA W+EWGPQ++R ++E+ L++R A +A K + E+L D F+RA AA +++ E+A + Y ++ + LG+KE+ +G FD+N+H+A+M + ++E+ EDT+C + KGY ++RPAMV V++
Sbjct: 113 KQEVSVDDLLNTPAFLQKKIEALNKSMVKVQEQIDEADAEAAKEWEEWGPQISRAKREYQALRARMVNATMEASTTAKVKCLKEVLQAYDNFQRAQAAFKPQSEDEQAALDQYTKMFDDLNEVFTKLGMKEIPTVGEPFDFNLHSAVMQQPSDEYPEDTICLEYAKGYMVDGEMIRPAMVVVSA 296
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S0UHW3_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHW3_9STRA) HSP 1 Score: 135 bits (340), Expect = 6.070e-34 Identity = 70/176 (39.77%), Postives = 106/176 (60.23%), Query Frame = 3
Query: 393 DLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVA 920
D+LNS AFLK+K+++L+ I + ++ A + A +EWGPQ+ L++E+ ++ R E + K +L + D F+RA+ I AETD EK + A YK Y ++ + +G+ EVE +G++FDY +H A+M E+ E VCQ FQKG+ GE L+RPAMVAVA
Sbjct: 108 DILNSPAFLKRKLEVLESDIATADEDLAAATERKEVAKEEWGPQLEALQREYQNIQQRMTEQNQEGDSDAKVRVVKGVLDLLDNFDRASGVIVAETDEEKQIEAEYKQAYQDILDQFKKMGVMEVETVGSEFDYELHQAVMQMPGTEYEEGYVCQEFQKGFIMGEALIRPAMVAVA 283
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S3L4W1_9STRA (GrpE protein homolog n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4W1_9STRA) HSP 1 Score: 131 bits (329), Expect = 8.730e-33 Identity = 70/181 (38.67%), Postives = 107/181 (59.12%), Query Frame = 3
Query: 381 DGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
D D+LNS AFLK+K+D+LK I E I A+ EW Q+ L+KE+ +++R G+ K + E L V D F+RA I+AETD +K + Y+ Y ++ L LG++EV+ +G +FDY IH A+M + ++E+ E V + FQKG++ G+TL+R AMV+VA+
Sbjct: 62 DSSTDILNSPAFLKRKIDVLKSDIAKAEEGIAAAKQRLDEGKAEWEGQLDELQKEYQNIQARLGDQQKKGGSMAIVQVAREALKVLDNFDRAFGVITAETDSQKKIEEEYRTTYNEILTILADLGVEEVQTVGTEFDYEIHQAVMQKPSDEYEEGIVVEEFQKGFKLGDTLIRAAMVSVAA 242
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S4AM71_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM71_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.020e-32 Identity = 70/178 (39.33%), Postives = 105/178 (58.99%), Query Frame = 3
Query: 387 VEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVA 920
V D+L+S AFLK+K+++L+ I TE E+ A + A +EWGPQ+ L++E+ ++ R E K IL + D F+RA+ I AET+ E+ + A YK Y ++ +G+ EVE +G +FDY +H A+M E+ E VC+ FQKG+ E+L+RPAMVAVA
Sbjct: 70 VNDILSSPAFLKRKLEVLESDIATTEEELVAATERKEIAKEEWGPQIEALQREYTNIQQRMTEQNQVGDSDAKVRVVKGILDLLDNFDRASGVIVAETEVEQTIEAGYKQAYQDILDQFAEMGVTEVETLGTEFDYELHQAVMQMPGTEYEEGVVCKEFQKGFIMDESLIRPAMVAVA 247
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A1E7F4A0_9STRA (GrpE nucleotide exchange factor n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4A0_9STRA) HSP 1 Score: 125 bits (315), Expect = 4.990e-31 Identity = 78/196 (39.80%), Postives = 114/196 (58.16%), Query Frame = 3
Query: 384 GVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAF----NEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRF-GE-----------TLVRPAMVAVAS 923
G D+L+S AFLK+K+++L+ IT +E E+ A + A +EWGPQ L +E+ ++ R +T+ +G A+A + +L + DTF RA+ I ETD EKA+ A YK Y +I E LG+ EVE +G +FDY +H A+M E+ E +C+ FQKG+ GE TL+RPAMVAVA+
Sbjct: 25 GATDILSSPAFLKRKLEVLETDITNSEEELAKAMERLEVAKEEWGPQFDNLSREYTNIQER----MTEQNQEGDADAIVRVVSAVLDLLDTFNRASEVIIPETDTEKAIEAAYKLAYQDIISQFEKLGVTEVETVGTEFDYELHQAVMQMPDPEYEEGFICKEFQKGFIILGEEPKDEDKERQDTLIRPAMVAVAA 216
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7R9WM61_9STRA (GrpE protein homolog n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM61_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.510e-30 Identity = 65/177 (36.72%), Postives = 105/177 (59.32%), Query Frame = 3
Query: 393 DLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
D+LNS AFL++K+++L+ I + A +EW Q+ +LE E+ +K R + +E + IL + D FER + ETD EKA+ Y+ V++ ++ LE LG+K+VE +G +FDY +H A+M ++ E+ E+ +C+ +QKG+ GE L+RPAMVAVA+
Sbjct: 70 DILNSPAFLQRKLEVLETDIKKADXXXXXXXXXXSAGKEEWQDQLDKLEVEYKTIKDRMSAQTDQNDVVATSEVASAILELVDNFERGFGIVIPETDEEKAIDEEYRKVHSDILATLEKLGVKQVETVGKEFDYEVHQAVMQRASEEYEENIICEEYQKGFVIGEKLIRPAMVAVAA 246 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig104.292.1 >prot_S-dermatodea_contig104.292.1 ID=prot_S-dermatodea_contig104.292.1|Name=mRNA_S-dermatodea_contig104.292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=284bp MMNRALRSLCAMAAMLAANEVCGFVTPAGVSSLAGRTPVARVATSPSRSSback to top mRNA from alignment at S-dermatodea_contig104:32370..35398+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig104.292.1 ID=mRNA_S-dermatodea_contig104.292.1|Name=mRNA_S-dermatodea_contig104.292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3029bp|location=Sequence derived from alignment at S-dermatodea_contig104:32370..35398+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig104:32370..35398+ >mRNA_S-dermatodea_contig104.292.1 ID=mRNA_S-dermatodea_contig104.292.1|Name=mRNA_S-dermatodea_contig104.292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1704bp|location=Sequence derived from alignment at S-dermatodea_contig104:32370..35398+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |