mRNA_S-dermatodea_contig104.292.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig104.292.1
Unique NamemRNA_S-dermatodea_contig104.292.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: D8LBD7_ECTSI (GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD7_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 6.650e-122
Identity = 191/281 (67.97%), Postives = 222/281 (79.00%), Query Frame = 3
Query:   84 MNRALRSLCAMAAMLAANEVCGFVTPAGVSSLAGRTPVARVATSPSRSSRRWEKQQQMDAGNVDASGAGDKGTGTFQSWVQKAAGRLGRGPFSRAAKSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVASP 926
            M+ A+RSL A+AAMLAANE C FV PAG++SLAGR+  A   TS  RSSRRW+K QQ+DAGN D   +G++  G F SWV+K AGR GRGPFSRAAK KD V+DLLNS+AFL KKV+ML+KQI  T+ +I  A+ +A   W EWGPQV RLEKEF+ LK RGGEA T+AY+KGKAEA N IL V D FERAA AISAETDGE+AVVAYYKD Y  M+ CLEGL L EV+ IGA FDYNIHNAIM E+T+EF ED VC+VFQKGY+ G+TLVRPAMVAVA P
Sbjct:    1 MSCAMRSLFAVAAMLAANEACAFVHPAGLTSLAGRSVAAPACTSVERSSRRWDKAQQLDAGNGDGGSSGEQPAGPFSSWVKKTAGRFGRGPFSRAAK-KDEVDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVAVP 280          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A835ZCF7_9STRA (GrpE protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF7_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.880e-50
Identity = 97/186 (52.15%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  366 AAKSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
            AA     V+DLL S AFL KKV++LKKQ+  TE EI  A  EA   W+EWGPQ+ RLE EF  LK R      +A ++ K +A   IL V D FERA+ AI A+TDGEKAVVAYYK VY  M    + LG++ V  +G  FDYN+H A+M + + E  ED V Q F KG+  G TL+RPAMVAV+S
Sbjct:   56 AADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSS 241          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: H6WB81_VAULI (GrpE protein homolog n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB81_VAULI)

HSP 1 Score: 158 bits (399), Expect = 4.420e-43
Identity = 85/184 (46.20%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  372 KSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
            +SK   +DLL +  FL KK+++L KQI   E EI  A LEA   W+EWGPQ+ RLE+EF  +++R      +A    K +   EIL V+D F RA+ AIS  T+GE AVV YYK +Y  M      LG+K +  +G  FDYN+H A+M +S+ EF ED VC    KG+  G+ L+RPAMVAV++
Sbjct:   62 RSKANDDDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVMRQSS-EFDEDIVCLELTKGFMVGKELIRPAMVAVST 244          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A448ZSA7_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA7_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.990e-36
Identity = 78/201 (38.81%), Postives = 118/201 (58.71%), Query Frame = 3
Query:  333 AGRLGRGPFSRAAKSKDG-----VEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVA 920
            A RLG        ++ DG      +D+L+S AFLK+KV++L+  I  TE ++  A    + A +EWGPQ+  LE+E+  ++ R  E   +     K      IL + D F+RA+  I AET+ ++A+ A YK  Y  ++   + +G+ EVE +G +FDY +H A+M    +E+ E  VCQ FQKG+  GE+L+RPAMVAVA
Sbjct:   47 ATRLGMAEEETTEETSDGEDAPAADDILSSPAFLKRKVEVLESDIAKTEEDLVAATERKEIAKEEWGPQLEALEREYTNIQQRMTEQNQEGDSDAKVRVVKGILDLLDNFDRASGVIVAETEADQAIEAAYKQAYQDILDKFKEMGVTEVETVGTEFDYELHQAVMQMPGSEYEEGFVCQEFQKGFIMGESLIRPAMVAVA 247          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S2V1T8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 3.060e-35
Identity = 66/184 (35.87%), Postives = 114/184 (61.96%), Query Frame = 3
Query:  372 KSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
            K +  V+DLLN+ AFL+KK++ L K +   + +I +A+ EA   W+EWGPQ++R ++E+  L++R   A  +A    K +   E+L   D F+RA AA   +++ E+A +  Y  ++  +      LG+KE+  +G  FD+N+H+A+M + ++E+ EDT+C  + KGY     ++RPAMV V++
Sbjct:  113 KQEVSVDDLLNTPAFLQKKIEALNKSMVKVQEQIDEADAEAAKEWEEWGPQISRAKREYQALRARMVNATMEASTTAKVKCLKEVLQAYDNFQRAQAAFKPQSEDEQAALDQYTKMFDDLNEVFTKLGMKEIPTVGEPFDFNLHSAVMQQPSDEYPEDTICLEYAKGYMVDGEMIRPAMVVVSA 296          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S0UHW3_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHW3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.070e-34
Identity = 70/176 (39.77%), Postives = 106/176 (60.23%), Query Frame = 3
Query:  393 DLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVA 920
            D+LNS AFLK+K+++L+  I   + ++  A    + A +EWGPQ+  L++E+  ++ R  E   +     K      +L + D F+RA+  I AETD EK + A YK  Y  ++   + +G+ EVE +G++FDY +H A+M     E+ E  VCQ FQKG+  GE L+RPAMVAVA
Sbjct:  108 DILNSPAFLKRKLEVLESDIATADEDLAAATERKEVAKEEWGPQLEALQREYQNIQQRMTEQNQEGDSDAKVRVVKGVLDLLDNFDRASGVIVAETDEEKQIEAEYKQAYQDILDQFKKMGVMEVETVGSEFDYELHQAVMQMPGTEYEEGYVCQEFQKGFIMGEALIRPAMVAVA 283          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S3L4W1_9STRA (GrpE protein homolog n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4W1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 8.730e-33
Identity = 70/181 (38.67%), Postives = 107/181 (59.12%), Query Frame = 3
Query:  381 DGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
            D   D+LNS AFLK+K+D+LK  I   E  I  A+        EW  Q+  L+KE+  +++R G+   K       +   E L V D F+RA   I+AETD +K +   Y+  Y  ++  L  LG++EV+ +G +FDY IH A+M + ++E+ E  V + FQKG++ G+TL+R AMV+VA+
Sbjct:   62 DSSTDILNSPAFLKRKIDVLKSDIAKAEEGIAAAKQRLDEGKAEWEGQLDELQKEYQNIQARLGDQQKKGGSMAIVQVAREALKVLDNFDRAFGVITAETDSQKKIEEEYRTTYNEILTILADLGVEEVQTVGTEFDYEIHQAVMQKPSDEYEEGIVVEEFQKGFKLGDTLIRAAMVSVAA 242          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S4AM71_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM71_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.020e-32
Identity = 70/178 (39.33%), Postives = 105/178 (58.99%), Query Frame = 3
Query:  387 VEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVA 920
            V D+L+S AFLK+K+++L+  I  TE E+  A    + A +EWGPQ+  L++E+  ++ R  E         K      IL + D F+RA+  I AET+ E+ + A YK  Y  ++     +G+ EVE +G +FDY +H A+M     E+ E  VC+ FQKG+   E+L+RPAMVAVA
Sbjct:   70 VNDILSSPAFLKRKLEVLESDIATTEEELVAATERKEIAKEEWGPQIEALQREYTNIQQRMTEQNQVGDSDAKVRVVKGILDLLDNFDRASGVIVAETEVEQTIEAGYKQAYQDILDQFAEMGVTEVETLGTEFDYELHQAVMQMPGTEYEEGVVCKEFQKGFIMDESLIRPAMVAVA 247          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A1E7F4A0_9STRA (GrpE nucleotide exchange factor n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4A0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.990e-31
Identity = 78/196 (39.80%), Postives = 114/196 (58.16%), Query Frame = 3
Query:  384 GVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAF----NEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRF-GE-----------TLVRPAMVAVAS 923
            G  D+L+S AFLK+K+++L+  IT +E E+  A    + A +EWGPQ   L +E+  ++ R    +T+   +G A+A     + +L + DTF RA+  I  ETD EKA+ A YK  Y  +I   E LG+ EVE +G +FDY +H A+M     E+ E  +C+ FQKG+   GE           TL+RPAMVAVA+
Sbjct:   25 GATDILSSPAFLKRKLEVLETDITNSEEELAKAMERLEVAKEEWGPQFDNLSREYTNIQER----MTEQNQEGDADAIVRVVSAVLDLLDTFNRASEVIIPETDTEKAIEAAYKLAYQDIISQFEKLGVTEVETVGTEFDYELHQAVMQMPDPEYEEGFICKEFQKGFIILGEEPKDEDKERQDTLIRPAMVAVAA 216          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7R9WM61_9STRA (GrpE protein homolog n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM61_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.510e-30
Identity = 65/177 (36.72%), Postives = 105/177 (59.32%), Query Frame = 3
Query:  393 DLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 923
            D+LNS AFL++K+++L+  I   +           A  +EW  Q+ +LE E+  +K R      +      +E  + IL + D FER    +  ETD EKA+   Y+ V++ ++  LE LG+K+VE +G +FDY +H A+M  ++ E+ E+ +C+ +QKG+  GE L+RPAMVAVA+
Sbjct:   70 DILNSPAFLQRKLEVLETDIKKADXXXXXXXXXXSAGKEEWQDQLDKLEVEYKTIKDRMSAQTDQNDVVATSEVASAILELVDNFERGFGIVIPETDEEKAIDEEYRKVHSDILATLEKLGVKQVETVGKEFDYEVHQAVMQRASEEYEENIICEEYQKGFVIGEKLIRPAMVAVAA 246          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD7_ECTSI6.650e-12267.97GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835ZCF7_9STRA2.880e-5052.15GrpE protein homolog n=1 Tax=Tribonema minus TaxID... [more]
H6WB81_VAULI4.420e-4346.20GrpE protein homolog n=1 Tax=Vaucheria litorea Tax... [more]
A0A448ZSA7_9STRA5.990e-3638.81GrpE protein homolog n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S2V1T8_9STRA3.060e-3535.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0UHW3_9STRA6.070e-3439.77GrpE protein homolog n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S3L4W1_9STRA8.730e-3338.67GrpE protein homolog n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4AM71_9STRA1.020e-3239.33GrpE protein homolog n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7F4A0_9STRA4.990e-3139.80GrpE nucleotide exchange factor n=1 Tax=Fragilario... [more]
A0A7R9WM61_9STRA1.510e-3036.72GrpE protein homolog n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig104contigS-dermatodea_contig104:32370..35398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue5.9e-27
Seed eggNOG ortholog35128.Thaps23278
Preferred namemge1
KEGG koko:K03687
GOsGO:0000166,GO:0000774,GO:0001405,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006790,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016226,GO:0017038,GO:0017076,GO:0019866,GO:0022607,GO:0030150,GO:0030234,GO:0030554,GO:0031090,GO:0031163,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042026,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051082,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1901265,GO:1901363,GO:1990542
EggNOG free text desc.GrpE
EggNOG OGs2XD1Y@2836,COG0576@1,KOG3003@2759
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMitochondrial matrix cochaperone
Ec32 orthologEc-27_004320.1
Exons5
Model size1005
Cds size852
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.5726593-UTR-S-dermatodea_contig104:32369..324491622924155.5726593-UTR-S-dermatodea_contig104:32369..32449Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig104 32370..32449 +
1694079055.6226745-UTR-S-dermatodea_contig104:32369..324491694079055.6226745-UTR-S-dermatodea_contig104:32369..32449Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig104 32370..32449 +
1622924155.630532-UTR-S-dermatodea_contig104:35325..353981622924155.630532-UTR-S-dermatodea_contig104:35325..35398Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig104 35326..35398 +
1694079055.6965923-UTR-S-dermatodea_contig104:35325..353981694079055.6965923-UTR-S-dermatodea_contig104:35325..35398Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig104 35326..35398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.581227-CDS-S-dermatodea_contig104:32449..326651622924155.581227-CDS-S-dermatodea_contig104:32449..32665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 32450..32665 +
1694079055.632736-CDS-S-dermatodea_contig104:32449..326651694079055.632736-CDS-S-dermatodea_contig104:32449..32665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 32450..32665 +
1622924155.5895567-CDS-S-dermatodea_contig104:33640..338681622924155.5895567-CDS-S-dermatodea_contig104:33640..33868Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 33641..33868 +
1694079055.641384-CDS-S-dermatodea_contig104:33640..338681694079055.641384-CDS-S-dermatodea_contig104:33640..33868Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 33641..33868 +
1622924155.597578-CDS-S-dermatodea_contig104:34089..343381622924155.597578-CDS-S-dermatodea_contig104:34089..34338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 34090..34338 +
1694079055.651148-CDS-S-dermatodea_contig104:34089..343381694079055.651148-CDS-S-dermatodea_contig104:34089..34338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 34090..34338 +
1622924155.6072829-CDS-S-dermatodea_contig104:34637..347211622924155.6072829-CDS-S-dermatodea_contig104:34637..34721Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 34638..34721 +
1694079055.6613765-CDS-S-dermatodea_contig104:34637..347211694079055.6613765-CDS-S-dermatodea_contig104:34637..34721Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 34638..34721 +
1622924155.6201117-CDS-S-dermatodea_contig104:35250..353251622924155.6201117-CDS-S-dermatodea_contig104:35250..35325Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 35251..35325 +
1694079055.6830823-CDS-S-dermatodea_contig104:35250..353251694079055.6830823-CDS-S-dermatodea_contig104:35250..35325Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig104 35251..35325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig104.292.1prot_S-dermatodea_contig104.292.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig104 32450..35325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig104.292.1

>prot_S-dermatodea_contig104.292.1 ID=prot_S-dermatodea_contig104.292.1|Name=mRNA_S-dermatodea_contig104.292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=284bp
MMNRALRSLCAMAAMLAANEVCGFVTPAGVSSLAGRTPVARVATSPSRSS
RRWEKQQQMDAGNVDASGAGDKGTGTFQSWVQKAAGRLGRGPFSRAAKSK
DGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVT
RLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAET
DGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTN
EFSEDTVCQVFQKGYRFGETLVRPAMVAVASPA*
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mRNA from alignment at S-dermatodea_contig104:32370..35398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig104.292.1 ID=mRNA_S-dermatodea_contig104.292.1|Name=mRNA_S-dermatodea_contig104.292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3029bp|location=Sequence derived from alignment at S-dermatodea_contig104:32370..35398+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCACCAACACTGACGCCAGCCCTGAGCAGAGCAGCACGCAGCAGTGCGT TCCACCTCGCAAGTCTCTCGTGGAGCGATAATGATGAACCGTGCCTTGCG TTCGCTCTGTGCTATGGCCGCAATGCTCGCGGCGAATGAAGTTTGCGGAT TTGTCACGCCTGCCGGTGTGAGCTCATTAGCTGGCCGAACACCTGTCGCC CGTGTGGCCACTTCACCTTCGCGAAGCTCCCGACGATGGGAAAAGCAGCA GCAGATGGATGCTGGAAATGTAGATGCAAGCGGTGCTGGCGACAAGGTGC GAGCACATCAAATCCTTGCGCGATTTTGGGTTGGTGCTGTCTGCAGTGAA CAGTAAAAATGACGGGAATGGGGCTCATGTCTGAGGTGTTGATGGAGAGC ATCGCCAAAACCTGCACCAGTGGGACGATCGGTGTTTGCCACGGGGCGGA TAGCCTGACAAACTCCTTATTTTGCTCCCTGATTTGGCGGGCGGTGGTGT GCACGCTGGCTGTCCCAACAGACCCATGCTTGCCTCGCTACACTCGTCAC AACTGCACGCAGATCTACACCGTAGTTATATATATAACGTAAGAGCGACG CATACTTGTAGCAGTTCCACAGCAACTACAAGTATTACAGCGCAGTAATG GAACATGCACATCGCCGGCTGTTATTGAGGTTACAGCAGCAGCAGTGCCC AGAGACCCGCGTTCACCTCAGTCAGGCAGTTTGCGGGAGATTGCATGACT TCGAATCCCTGCGCTTCCCTCCTGCACTCCACGAAACACGAAATCGAAAC ACAAGTGTTGCCGGCCCGAATCCCGATCCACCCCGACGTGTTGCGCGGGT AGTCCGCACGGCCGATATAAACAGCCTATTTGTAGCTGCATATCTCCGCA TCATCCAAGCCCGCCAGGATGGGTGCGTTTGGGAACAGGGTTCAAGTATT ATATGTTGCGTGGTTGAGCTCTTCACGCCCCAAACATTTTTGAGCCGTAG CCTTGAAAATTGTGCTGTATTGGAGGCCATCTCTGCGCCATCCTGATACA TCCATGGGGGACGAGCGTCTTCTGTGTATATAATGTTTCGAGTCAGCGCT TCAACCTCACAAGCTCGCATGTAGCAGTGCTGGCGTCCCTCTGTTTCACA TACAACTGTGATTGATCCCCACGAACGACATATCGGTTGAATGCCACTCG ATGCTGAAGCGCGTACTCAGCTATTTTGTCCGTGACCCCACACCTCACGC GCCACTTGTGCTGATTATCAGGGAACTGGCACGTTTCAATCGTGGGTTCA AAAAGCGGCCGGGCGGCTAGGGCGAGGACCGTTCTCTCGTGCGGCCAAAA GTAAAGATGGAGTCGAGGATCTGCTGAATTCGGAAGCGTTCCTGAAAAAG AAGGTGGACATGCTGAAAAAGCAGATCACTGTGACTGAGGGAGAGATCAA AGATGCCGAGCTGGAGGCGCAAGCGGCATGGGACGAATGGGGTCCTCAGG TATGCGGCATCGCTGTCGTGAACACGCCGATGCATTTTGTTGCCTTGGGG TGTGCCAAATGGCCAGGGTTTTAACGATGCAATACATACCTCTGGTCATT AGTCTTGGGCGTGTTTAGCGCCCGTGCAGCACTGCGACAGTCGTAGCAAA GTCTCACTATGTGGTGATGATACCATGGCTCGCCTCATCTATCGTCTCTG ACTCTGTGCTTACCTTACAGGTGACGCGACTCGAGAAGGAGTTCGCACTC CTCAAGTCCCGCGGGGGTGAGGCGGTTACAAAGGCGTACGACAAGGGCAA AGCGGAGGCCTTTAACGAAATCCTCGTTGTAACAGACACTTTTGAGCGCG CGGCTGCGGCCATCAGCGCGGAGACAGACGGGGAGAAAGCAGTGGTGGCC TACTACAAGGATGTGTACGCCACGATGATCGGATGCCTCGAGGGGCTTGG TCTCAAGGAGGTGGAGATGGTGAGTTTTCTACGTTCTCCAAGTCGCTTGA AAGTTTTTGCCGTCGAGCCTCCTGCAGCCCACGAGGCAGTTGTTCCCACT GGTGCCCTCTCTGCTGTCGCACGTCCTCTGCATACTTGCGTCGAGTGACA GCTGGCGCTTTTGATGGCTTGTATTGGGTCGTCAGTATGAATACCCTCAT GGGTTTTTGGATGGGATGCGGTGGGTCGGAAACACGCTCTTTGCATACTC AAATCAAATCTCGCCCTCGTACTCCTCGCCTCGAAAATGCGCAATACGCG TTGCTACGACCGTCACAGATTGGCGCGCAGTTCGACTACAACATTCACAA TGCCATCATGCACGAGAGCACAAACGAGTTCAGCGAAGACACTGTCTGCC AGGTAAAGTGCTACTCCAACAAGAGCCCGCTCCTTTACTTTTGATTAGTA GGAATCCTCGCCTTCGCTTTCGCATGCGCACACTTCCAACTCGGAATCAA ACCGCCCTACAAAGCTTTCGATGCCTTTGTCTGTCGAAACTCGGTAGGCC CGCCTGCGTAGTTGTCTTAGTTAGGCTGGCAGTGGCCCTTTGATGATATT CAGCAATTATTACGGAGGTATGGAACAAGATCAAGTGAATCGACCATGAA TACCAAAACAAAACACCACTAAAAAAATAGAACGACGTCTGGCCTAGTGT GCGATAATTCCGGCCTACACATACGTATGATTTTAGCTGAGATTTCTGAT GACTACACATACATGGGTCTGTTAATGTTGTACAATATAGTCCTCCGTAA AGTGTGTACCCACGCCATCATTTCGTTCTTCAGTTTCCGGCAGTAAATTG ACGTTGGCGGAGATATCGTTCACCGGTACCACCTTACTGACGGTTACCAG CCGCCTCGTTCTCTTGTTACGGCTTTTCCAGGTCTTCCAAAAGGGCTACC GATTTGGGGAGACGCTGGTTAGACCGGCAATGGTCGCAGTCGCGAGTCCC GCTTAGGCGGGGATGGGTGGGAGGGGGGAGGTGGGCGCTGTGGCGCATCA GCGTGATTGCTTGTAGTAACATAGCCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig104:32370..35398+

>mRNA_S-dermatodea_contig104.292.1 ID=mRNA_S-dermatodea_contig104.292.1|Name=mRNA_S-dermatodea_contig104.292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1704bp|location=Sequence derived from alignment at S-dermatodea_contig104:32370..35398+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGAACCGTGCCTTGCGTTCGCTCTGTGCTATGGCCGCAATGCTCGC
GGCGAATGAAGTTTGCGGATTTGTCACGCCTGCCGGTGTGAGCTCATTAG
CTGGCCGAACACCTGTCGCCCGTGTGGCCACTTCACCTTCGCGAAGCTCC
CGACGATGGGAAAAGCAGCAGCAGATGGATGCTGGAAATGTAGATGCAAG
CGGTGCTGGCGACAAGATGATGAACCGTGCCTTGCGTTCGCTCTGTGCTA
TGGCCGCAATGCTCGCGGCGAATGAAGTTTGCGGATTTGTCACGCCTGCC
GGTGTGAGCTCATTAGCTGGCCGAACACCTGTCGCCCGTGTGGCCACTTC
ACCTTCGCGAAGCTCCCGACGATGGGAAAAGCAGCAGCAGATGGATGCTG
GAAATGTAGATGCAAGCGGTGCTGGCGACAAGGGAACTGGCACGTTTCAA
TCGTGGGTTCAAAAAGCGGCCGGGCGGCTAGGGCGAGGACCGTTCTCTCG
TGCGGCCAAAAGTAAAGATGGAGTCGAGGATCTGCTGAATTCGGAAGCGT
TCCTGAAAAAGAAGGTGGACATGCTGAAAAAGCAGATCACTGTGACTGAG
GGAGAGATCAAAGATGCCGAGCTGGAGGCGCAAGCGGCATGGGACGAATG
GGGTCCTCAGGGAACTGGCACGTTTCAATCGTGGGTTCAAAAAGCGGCCG
GGCGGCTAGGGCGAGGACCGTTCTCTCGTGCGGCCAAAAGTAAAGATGGA
GTCGAGGATCTGCTGAATTCGGAAGCGTTCCTGAAAAAGAAGGTGGACAT
GCTGAAAAAGCAGATCACTGTGACTGAGGGAGAGATCAAAGATGCCGAGC
TGGAGGCGCAAGCGGCATGGGACGAATGGGGTCCTCAGGTGACGCGACTC
GAGAAGGAGTTCGCACTCCTCAAGTCCCGCGGGGGTGAGGCGGTTACAAA
GGCGTACGACAAGGGCAAAGCGGAGGCCTTTAACGAAATCCTCGTTGTAA
CAGACACTTTTGAGCGCGCGGCTGCGGCCATCAGCGCGGAGACAGACGGG
GAGAAAGCAGTGGTGGCCTACTACAAGGATGTGTACGCCACGATGATCGG
ATGCCTCGAGGGGCTTGGTCTCAAGGAGGTGGAGATGGTGACGCGACTCG
AGAAGGAGTTCGCACTCCTCAAGTCCCGCGGGGGTGAGGCGGTTACAAAG
GCGTACGACAAGGGCAAAGCGGAGGCCTTTAACGAAATCCTCGTTGTAAC
AGACACTTTTGAGCGCGCGGCTGCGGCCATCAGCGCGGAGACAGACGGGG
AGAAAGCAGTGGTGGCCTACTACAAGGATGTGTACGCCACGATGATCGGA
TGCCTCGAGGGGCTTGGTCTCAAGGAGGTGGAGATGATTGGCGCGCAGTT
CGACTACAACATTCACAATGCCATCATGCACGAGAGCACAAACGAGTTCA
GCGAAGACACTGTCTGCCAGATTGGCGCGCAGTTCGACTACAACATTCAC
AATGCCATCATGCACGAGAGCACAAACGAGTTCAGCGAAGACACTGTCTG
CCAGGTCTTCCAAAAGGGCTACCGATTTGGGGAGACGCTGGTTAGACCGG
CAATGGTCGCAGTCGCGAGTCCCGCTTAGGTCTTCCAAAAGGGCTACCGA
TTTGGGGAGACGCTGGTTAGACCGGCAATGGTCGCAGTCGCGAGTCCCGC
TTAG
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