prot_S-dermatodea_contig104.292.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig104.292.1
Unique Nameprot_S-dermatodea_contig104.292.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length284
Homology
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: D8LBD7_ECTSI (GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD7_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 4.110e-122
Identity = 191/281 (67.97%), Postives = 222/281 (79.00%), Query Frame = 0
Query:    2 MNRALRSLCAMAAMLAANEVCGFVTPAGVSSLAGRTPVARVATSPSRSSRRWEKQQQMDAGNVDASGAGDKGTGTFQSWVQKAAGRLGRGPFSRAAKSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVASP 282
            M+ A+RSL A+AAMLAANE C FV PAG++SLAGR+  A   TS  RSSRRW+K QQ+DAGN D   +G++  G F SWV+K AGR GRGPFSRAAK KD V+DLLNS+AFL KKV+ML+KQI  T+ +I  A+ +A   W EWGPQV RLEKEF+ LK RGGEA T+AY+KGKAEA N IL V D FERAA AISAETDGE+AVVAYYKD Y  M+ CLEGL L EV+ IGA FDYNIHNAIM E+T+EF ED VC+VFQKGY+ G+TLVRPAMVAVA P
Sbjct:    1 MSCAMRSLFAVAAMLAANEACAFVHPAGLTSLAGRSVAAPACTSVERSSRRWDKAQQLDAGNGDGGSSGEQPAGPFSSWVKKTAGRFGRGPFSRAAK-KDEVDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCKVFQKGYQVGDTLVRPAMVAVAVP 280          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A835ZCF7_9STRA (GrpE protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF7_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.390e-51
Identity = 97/186 (52.15%), Postives = 120/186 (64.52%), Query Frame = 0
Query:   96 AAKSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 281
            AA     V+DLL S AFL KKV++LKKQ+  TE EI  A  EA   W+EWGPQ+ RLE EF  LK R      +A ++ K +A   IL V D FERA+ AI A+TDGEKAVVAYYK VY  M    + LG++ V  +G  FDYN+H A+M + + E  ED V Q F KG+  G TL+RPAMVAV+S
Sbjct:   56 AADGGKDVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVSQEFTKGFTVGGTLIRPAMVAVSS 241          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: H6WB81_VAULI (GrpE protein homolog n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB81_VAULI)

HSP 1 Score: 158 bits (399), Expect = 1.070e-43
Identity = 85/184 (46.20%), Postives = 115/184 (62.50%), Query Frame = 0
Query:   98 KSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 281
            +SK   +DLL +  FL KK+++L KQI   E EI  A LEA   W+EWGPQ+ RLE+EF  +++R      +A    K +   EIL V+D F RA+ AIS  T+GE AVV YYK +Y  M      LG+K +  +G  FDYN+H A+M +S+ EF ED VC    KG+  G+ L+RPAMVAV++
Sbjct:   62 RSKANDDDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVMRQSS-EFDEDIVCLELTKGFMVGKELIRPAMVAVST 244          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A448ZSA7_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA7_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.610e-36
Identity = 78/201 (38.81%), Postives = 118/201 (58.71%), Query Frame = 0
Query:   85 AGRLGRGPFSRAAKSKDG-----VEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVA 280
            A RLG        ++ DG      +D+L+S AFLK+KV++L+  I  TE ++  A    + A +EWGPQ+  LE+E+  ++ R  E   +     K      IL + D F+RA+  I AET+ ++A+ A YK  Y  ++   + +G+ EVE +G +FDY +H A+M    +E+ E  VCQ FQKG+  GE+L+RPAMVAVA
Sbjct:   47 ATRLGMAEEETTEETSDGEDAPAADDILSSPAFLKRKVEVLESDIAKTEEDLVAATERKEIAKEEWGPQLEALEREYTNIQQRMTEQNQEGDSDAKVRVVKGILDLLDNFDRASGVIVAETEADQAIEAAYKQAYQDILDKFKEMGVTEVETVGTEFDYELHQAVMQMPGSEYEEGFVCQEFQKGFIMGESLIRPAMVAVA 247          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S2V1T8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 8.260e-36
Identity = 66/184 (35.87%), Postives = 114/184 (61.96%), Query Frame = 0
Query:   98 KSKDGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 281
            K +  V+DLLN+ AFL+KK++ L K +   + +I +A+ EA   W+EWGPQ++R ++E+  L++R   A  +A    K +   E+L   D F+RA AA   +++ E+A +  Y  ++  +      LG+KE+  +G  FD+N+H+A+M + ++E+ EDT+C  + KGY     ++RPAMV V++
Sbjct:  113 KQEVSVDDLLNTPAFLQKKIEALNKSMVKVQEQIDEADAEAAKEWEEWGPQISRAKREYQALRARMVNATMEASTTAKVKCLKEVLQAYDNFQRAQAAFKPQSEDEQAALDQYTKMFDDLNEVFTKLGMKEIPTVGEPFDFNLHSAVMQQPSDEYPEDTICLEYAKGYMVDGEMIRPAMVVVSA 296          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S0UHW3_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHW3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.680e-34
Identity = 70/176 (39.77%), Postives = 106/176 (60.23%), Query Frame = 0
Query:  105 DLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVA 280
            D+LNS AFLK+K+++L+  I   + ++  A    + A +EWGPQ+  L++E+  ++ R  E   +     K      +L + D F+RA+  I AETD EK + A YK  Y  ++   + +G+ EVE +G++FDY +H A+M     E+ E  VCQ FQKG+  GE L+RPAMVAVA
Sbjct:  108 DILNSPAFLKRKLEVLESDIATADEDLAAATERKEVAKEEWGPQLEALQREYQNIQQRMTEQNQEGDSDAKVRVVKGVLDLLDNFDRASGVIVAETDEEKQIEAEYKQAYQDILDQFKKMGVMEVETVGSEFDYELHQAVMQMPGTEYEEGYVCQEFQKGFIMGEALIRPAMVAVA 283          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S3L4W1_9STRA (GrpE protein homolog n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4W1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.490e-33
Identity = 70/181 (38.67%), Postives = 107/181 (59.12%), Query Frame = 0
Query:  101 DGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 281
            D   D+LNS AFLK+K+D+LK  I   E  I  A+        EW  Q+  L+KE+  +++R G+   K       +   E L V D F+RA   I+AETD +K +   Y+  Y  ++  L  LG++EV+ +G +FDY IH A+M + ++E+ E  V + FQKG++ G+TL+R AMV+VA+
Sbjct:   62 DSSTDILNSPAFLKRKIDVLKSDIAKAEEGIAAAKQRLDEGKAEWEGQLDELQKEYQNIQARLGDQQKKGGSMAIVQVAREALKVLDNFDRAFGVITAETDSQKKIEEEYRTTYNEILTILADLGVEEVQTVGTEFDYEIHQAVMQKPSDEYEEGIVVEEFQKGFKLGDTLIRAAMVSVAA 242          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7S4AM71_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM71_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.900e-33
Identity = 70/178 (39.33%), Postives = 105/178 (58.99%), Query Frame = 0
Query:  103 VEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVA 280
            V D+L+S AFLK+K+++L+  I  TE E+  A    + A +EWGPQ+  L++E+  ++ R  E         K      IL + D F+RA+  I AET+ E+ + A YK  Y  ++     +G+ EVE +G +FDY +H A+M     E+ E  VC+ FQKG+   E+L+RPAMVAVA
Sbjct:   70 VNDILSSPAFLKRKLEVLESDIATTEEELVAATERKEIAKEEWGPQIEALQREYTNIQQRMTEQNQVGDSDAKVRVVKGILDLLDNFDRASGVIVAETEVEQTIEAGYKQAYQDILDQFAEMGVTEVETLGTEFDYELHQAVMQMPGTEYEEGVVCKEFQKGFIMDESLIRPAMVAVA 247          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A1E7F4A0_9STRA (GrpE nucleotide exchange factor n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4A0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.490e-31
Identity = 78/196 (39.80%), Postives = 114/196 (58.16%), Query Frame = 0
Query:  102 GVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAF----NEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRF-GE-----------TLVRPAMVAVAS 281
            G  D+L+S AFLK+K+++L+  IT +E E+  A    + A +EWGPQ   L +E+  ++ R    +T+   +G A+A     + +L + DTF RA+  I  ETD EKA+ A YK  Y  +I   E LG+ EVE +G +FDY +H A+M     E+ E  +C+ FQKG+   GE           TL+RPAMVAVA+
Sbjct:   25 GATDILSSPAFLKRKLEVLETDITNSEEELAKAMERLEVAKEEWGPQFDNLSREYTNIQER----MTEQNQEGDADAIVRVVSAVLDLLDTFNRASEVIIPETDTEKAIEAAYKLAYQDIISQFEKLGVTEVETVGTEFDYELHQAVMQMPDPEYEEGFICKEFQKGFIILGEEPKDEDKERQDTLIRPAMVAVAA 216          
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Match: A0A7R9WM61_9STRA (GrpE protein homolog n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM61_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.500e-31
Identity = 65/177 (36.72%), Postives = 105/177 (59.32%), Query Frame = 0
Query:  105 DLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVTRLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAETDGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTNEFSEDTVCQVFQKGYRFGETLVRPAMVAVAS 281
            D+LNS AFL++K+++L+  I   +           A  +EW  Q+ +LE E+  +K R      +      +E  + IL + D FER    +  ETD EKA+   Y+ V++ ++  LE LG+K+VE +G +FDY +H A+M  ++ E+ E+ +C+ +QKG+  GE L+RPAMVAVA+
Sbjct:   70 DILNSPAFLQRKLEVLETDIKKADXXXXXXXXXXSAGKEEWQDQLDKLEVEYKTIKDRMSAQTDQNDVVATSEVASAILELVDNFERGFGIVIPETDEEKAIDEEYRKVHSDILATLEKLGVKQVETVGKEFDYEVHQAVMQRASEEYEENIICEEYQKGFVIGEKLIRPAMVAVAA 246          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig104.292.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD7_ECTSI4.110e-12267.97GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835ZCF7_9STRA6.390e-5152.15GrpE protein homolog n=1 Tax=Tribonema minus TaxID... [more]
H6WB81_VAULI1.070e-4346.20GrpE protein homolog n=1 Tax=Vaucheria litorea Tax... [more]
A0A448ZSA7_9STRA1.610e-3638.81GrpE protein homolog n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S2V1T8_9STRA8.260e-3635.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0UHW3_9STRA1.680e-3439.77GrpE protein homolog n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S3L4W1_9STRA2.490e-3338.67GrpE protein homolog n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4AM71_9STRA2.900e-3339.33GrpE protein homolog n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7F4A0_9STRA1.490e-3139.80GrpE nucleotide exchange factor n=1 Tax=Fragilario... [more]
A0A7R9WM61_9STRA4.500e-3136.72GrpE protein homolog n=1 Tax=Craspedostauros austr... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..137
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..283
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..18
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.561
IPR000740GrpE nucleotide exchange factorPRINTSPR00773GRPEPROTEINcoord: 233..248
score: 38.48
coord: 260..279
score: 47.81
coord: 178..193
score: 33.98
IPR000740GrpE nucleotide exchange factorPFAMPF01025GrpEcoord: 110..280
e-value: 1.9E-31
score: 109.0
IPR000740GrpE nucleotide exchange factorPANTHERPTHR21237GRPE PROTEINcoord: 121..281
IPR000740GrpE nucleotide exchange factorPROSITEPS01071GRPEcoord: 236..279
IPR000740GrpE nucleotide exchange factorHAMAPMF_01151GrpEcoord: 100..281
score: 13.224
IPR013805GrpE nucleotide exchange factor, coiled-coilGENE3D3.90.20.20coord: 114..223
e-value: 3.2E-5
score: 25.5
IPR013805GrpE nucleotide exchange factor, coiled-coilSUPERFAMILY58014Coiled-coil domain of nucleotide exchange factor GrpEcoord: 131..225
IPR009012GrpE nucleotide exchange factor, headGENE3D2.30.22.10coord: 225..281
e-value: 1.6E-17
score: 65.0
IPR009012GrpE nucleotide exchange factor, headSUPERFAMILY51064Head domain of nucleotide exchange factor GrpEcoord: 227..281

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig104contigS-dermatodea_contig104:32450..35325 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig104.292.1mRNA_S-dermatodea_contig104.292.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig104 32370..35398 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig104.292.1 ID=prot_S-dermatodea_contig104.292.1|Name=mRNA_S-dermatodea_contig104.292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=284bp
MMNRALRSLCAMAAMLAANEVCGFVTPAGVSSLAGRTPVARVATSPSRSS
RRWEKQQQMDAGNVDASGAGDKGTGTFQSWVQKAAGRLGRGPFSRAAKSK
DGVEDLLNSEAFLKKKVDMLKKQITVTEGEIKDAELEAQAAWDEWGPQVT
RLEKEFALLKSRGGEAVTKAYDKGKAEAFNEILVVTDTFERAAAAISAET
DGEKAVVAYYKDVYATMIGCLEGLGLKEVEMIGAQFDYNIHNAIMHESTN
EFSEDTVCQVFQKGYRFGETLVRPAMVAVASPA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000740GrpE
IPR013805GrpE_coiled_coil
IPR009012GrpE_head