mRNA_S-dermatodea_contig10385.281.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10385.281.1
Unique NamemRNA_S-dermatodea_contig10385.281.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10385.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10385contigS-dermatodea_contig10385:6896..7787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924154.5315099-CDS-S-dermatodea_contig10385:6896..70341622924154.5315099-CDS-S-dermatodea_contig10385:6896..7034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10385 6897..7034 -
1694079054.9196954-CDS-S-dermatodea_contig10385:6896..70341694079054.9196954-CDS-S-dermatodea_contig10385:6896..7034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10385 6897..7034 -
1622924154.5436306-CDS-S-dermatodea_contig10385:7622..77871622924154.5436306-CDS-S-dermatodea_contig10385:7622..7787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10385 7623..7787 -
1694079054.9299293-CDS-S-dermatodea_contig10385:7622..77871694079054.9299293-CDS-S-dermatodea_contig10385:7622..7787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10385 7623..7787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10385.281.1prot_S-dermatodea_contig10385.281.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10385 6897..7787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10385.281.1

>prot_S-dermatodea_contig10385.281.1 ID=prot_S-dermatodea_contig10385.281.1|Name=mRNA_S-dermatodea_contig10385.281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
IGAGGGLSDFGLPYGGAFTSRPLSRPSSGRHWAAELGLVDGSSRPSSMSR
LAGSAAKTGGDDSYPLDPDRMHLGSFNSDEAMTLGDAGTGAAVGMAAGAT
A
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mRNA from alignment at S-dermatodea_contig10385:6896..7787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10385.281.1 ID=mRNA_S-dermatodea_contig10385.281.1|Name=mRNA_S-dermatodea_contig10385.281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=892bp|location=Sequence derived from alignment at S-dermatodea_contig10385:6896..7787- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGGCGCTGGCGGCGGGTTGAGCGACTTCGGCTTGCCGTACGGAGGTGC
TTTCACGAGCAGGCCCCTGTCTCGGCCTTCCTCCGGTCGACATTGGGCGG
CCGAGCTGGGTCTCGTTGATGGGTCCTCGCGGCCGAGCAGCATGAGCAGG
CTTGCAGGGTCGGCGGTGAGAATGCGGAGGCAGCGGCGGTAGGGGATTGA
GGGTATATTTTGTTCGCTTCGTCTTGTTTTCTTCCTTTCCCACCTTTTTT
CATGCCTTTTAAAAACATAATTTCTAGGCAAATTTAATTTGTTCATGTAA
TAGTGCGGTCGAGCGTGATTTTGTGTGTGTGCGTGCTTGTTGGTCCTGCC
CCATGTGATTTGAAGATCGTGTGCGCAAGCTACTGTTTCTTGCGTTTTGT
CTCGAGCTGCATGTACCTGCTGCTGTTTTAACTCTTTGTTGCCCTCCTTG
TTTCTCCCCACGCGCCCCCTACCGTTTCAGATATTTTGTCTCTTTTCTAA
GGTGACGCTGTTGCTTTCGCGTTTGGCCAGCGACGTTATACACGCGTAAA
ATATCGAATTTCACTTGAGTCCTCTTCGATCTTATGTATGACGGAGTTTT
TTTGTGGCTATTTGTTCGTTTCGCGATGGAAGCCGACTGCGACTGCGTCA
AAGTTGTTACTACTGTTGATATTACACCTCTCACCCCGTCCCACCCCCCG
CCTGGCCGACTATTTCCCCTGCGATTCATGCTGTGCTCTATGTTACTCAT
CAGGCGAAAACTGGAGGTGACGATTCGTACCCCTTAGACCCTGATCGCAT
GCACCTCGGGAGTTTCAACAGCGATGAGGCGATGACGCTGGGGGACGCGG
GCACCGGGGCTGCTGTCGGTATGGCAGCCGGTGCGACGGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10385:6896..7787-

>mRNA_S-dermatodea_contig10385.281.1 ID=mRNA_S-dermatodea_contig10385.281.1|Name=mRNA_S-dermatodea_contig10385.281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig10385:6896..7787- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGGCGCTGGCGGCGGGTTGAGCGACTTCGGCTTGCCGTACGGAGGTGC
TTTCACGAGCAGGCCCCTGTCTCGGCCTTCCTCCGGTCGACATTGGGCGG
CCGAGCTGGGTCTCGTTGATGGGTCCTCGCGGCCGAGCAGCATGAGCAGG
CTTGCAGGGTCGGCGATCGGCGCTGGCGGCGGGTTGAGCGACTTCGGCTT
GCCGTACGGAGGTGCTTTCACGAGCAGGCCCCTGTCTCGGCCTTCCTCCG
GTCGACATTGGGCGGCCGAGCTGGGTCTCGTTGATGGGTCCTCGCGGCCG
AGCAGCATGAGCAGGCTTGCAGGGTCGGCGGCGAAAACTGGAGGTGACGA
TTCGTACCCCTTAGACCCTGATCGCATGCACCTCGGGAGTTTCAACAGCG
ATGAGGCGATGACGCTGGGGGACGCGGGCACCGGGGCTGCTGTCGGTATG
GCAGCCGGTGCGACGGCGGCGAAAACTGGAGGTGACGATTCGTACCCCTT
AGACCCTGATCGCATGCACCTCGGGAGTTTCAACAGCGATGAGGCGATGA
CGCTGGGGGACGCGGGCACCGGGGCTGCTGTCGGTATGGCAGCCGGTGCG
ACGGCG
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