mRNA_S-dermatodea_contig10369.272.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10369.272.1
Unique NamemRNA_S-dermatodea_contig10369.272.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10369.272.1 vs. uniprot
Match: D7G401_ECTSI (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G401_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.740e-35
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 PFRAKLADTNFIKFPKLKTKMLEDLDEMLSTDIPRLMEMLPRTVAPTRADEQIRNFMQETSGTPNPPKYNAPGGA 225
            PFR+KLADTNF KFPKLK KMLE+LDEMLS DIPRLMEMLPRTVAPTRADEQIRNFMQE++ TP PPKYNAPGGA
Sbjct:  350 PFRSKLADTNFTKFPKLKVKMLEELDEMLSVDIPRLMEMLPRTVAPTRADEQIRNFMQESNDTPTPPKYNAPGGA 424
[Close]
BLAST of mRNA_S-dermatodea_contig10369.272.1 vs. uniprot
Match: A0A835YYV9_9STRA (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.430e-11
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    4 FRAKLADTNFIKFPKLKTKMLEDLDEMLSTDIPRLMEMLPRTVAPTRADEQIRNFM 171
            FR+K  + +F KFPKLK KML+DLDE+LS DIPRLMEMLP +   TRA+ ++ + +
Sbjct:  351 FRSKCEELSFAKFPKLKPKMLQDLDEVLSQDIPRLMEMLPTSDVRTRAEREVASLL 406
[Close]
BLAST of mRNA_S-dermatodea_contig10369.272.1 vs. uniprot
Match: A0A4D9CZB1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZB1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.750e-7
Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 FRAKLADTNFIKFPKLKTKMLEDLDEMLSTDIPRLMEMLPRT 129
            FR KL D NF KFPK+K KML DL  +L T IP LME LP+T
Sbjct:  354 FRTKLLDLNFSKFPKIKNKMLADLSHILETQIPALMERLPKT 395
[Close]
BLAST of mRNA_S-dermatodea_contig10369.272.1 vs. uniprot
Match: A0A7S2RKL1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKL1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.080e-7
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    4 FRAKLADTNFIKFPKLKTKMLEDLDEMLSTDIPRLMEMLPR 126
            FRAKL++ +F +FPKL  K L DL+EML+ DIPRLME LPR
Sbjct:  359 FRAKLSEEDFSRFPKLNKKHLVDLEEMLTVDIPRLMERLPR 399
[Close]
BLAST of mRNA_S-dermatodea_contig10369.272.1 vs. uniprot
Match: A0A7S2AXU0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AXU0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.760e-5
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    4 FRAKLADTNFIKFPKLKTKMLEDLDEMLSTDIPRLMEMLPR 126
            F AKL + NF KF K+K K L+  +++LS DIPRLME LPR
Sbjct:  170 FGAKLTELNFTKFNKIKQKHLDQTEQLLSVDIPRLMEQLPR 210
[Close]
BLAST of mRNA_S-dermatodea_contig10369.272.1 vs. uniprot
Match: A0A812X475_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X475_SYMMI)

HSP 1 Score: 50.1 bits (118), Expect = 5.440e-5
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 FRAKLADTNFIKFPKLKTKMLEDLDEMLSTDIPRLMEMLPRTVAP 138
            FR+KL + +F KF  LK ++++  D  L+TDIPRLME LPR++ P
Sbjct:   29 FRSKLVELDFSKFAVLKQQLIDAADTTLATDIPRLMEALPRSIDP 73
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10369.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G401_ECTSI3.740e-3588.00RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
A0A835YYV9_9STRA2.430e-1157.14RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
A0A4D9CZB1_9STRA3.750e-764.29Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2RKL1_9STRA5.080e-765.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2AXU0_9STRA3.760e-558.54Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812X475_SYMMI5.440e-551.11Calmodulin n=1 Tax=Symbiodinium microadriaticum Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10369contigS-dermatodea_contig10369:897..4192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue6.4e-30
Seed eggNOG ortholog2880.D7G401
KEGG koko:K12483
KEGG Pathwayko04144,map04144
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRME1, RME-1/EHD family ATPase with a C-terminal EH domain
Ec32 orthologEc-19_000630.1
Exons4
Model size332
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10369.272.1prot_S-dermatodea_contig10369.272.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10369 897..4190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.839637-CDS-S-dermatodea_contig10369:896..9771622924153.839637-CDS-S-dermatodea_contig10369:896..977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10369 897..977 +
1694079054.419447-CDS-S-dermatodea_contig10369:896..9771694079054.419447-CDS-S-dermatodea_contig10369:896..977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10369 897..977 +
1622924153.8583202-CDS-S-dermatodea_contig10369:2411..24861622924153.8583202-CDS-S-dermatodea_contig10369:2411..2486Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10369 2412..2486 +
1694079054.4320188-CDS-S-dermatodea_contig10369:2411..24861694079054.4320188-CDS-S-dermatodea_contig10369:2411..2486Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10369 2412..2486 +
1622924153.867193-CDS-S-dermatodea_contig10369:3098..31971622924153.867193-CDS-S-dermatodea_contig10369:3098..3197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10369 3099..3197 +
1694079054.4421456-CDS-S-dermatodea_contig10369:3098..31971694079054.4421456-CDS-S-dermatodea_contig10369:3098..3197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10369 3099..3197 +
1622924153.875588-CDS-S-dermatodea_contig10369:4115..41901622924153.875588-CDS-S-dermatodea_contig10369:4115..4190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10369 4116..4190 +
1694079054.449707-CDS-S-dermatodea_contig10369:4115..41901694079054.449707-CDS-S-dermatodea_contig10369:4115..4190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10369 4116..4190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10369.272.1

>prot_S-dermatodea_contig10369.272.1 ID=prot_S-dermatodea_contig10369.272.1|Name=mRNA_S-dermatodea_contig10369.272.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
PFRAKLADTNFIKFPKLKTKMLEDLDEMLSTDIPRLMEMLPRTVAPTRAD
EQIRNFMQETSGTPNPPKYNAPGGARAGGSGYYDEEPDHRWAAGSTGGGS
YPGSPPDGTA
back to top

mRNA from alignment at S-dermatodea_contig10369:897..4192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10369.272.1 ID=mRNA_S-dermatodea_contig10369.272.1|Name=mRNA_S-dermatodea_contig10369.272.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3296bp|location=Sequence derived from alignment at S-dermatodea_contig10369:897..4192+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTTCCGCGCGAAGCTGGCCGACACGAACTTCATAAAGTTCCCGAAGCT
CAAAACTAAGATGCTCGAGGACCTCGACGAGGTACGGGTATTGAAGTTTA
ATTTCATGTTGTATACATTATGGGTACAGTACGTCCAGAGTATCGCTCTT
ATCTTATGGTGAAGTGTGAAGATTATGAGGGTGAAACACCTGCTTTGTGT
TGTGTGTAGCTCTGAATGCCGAAGTATTATATTATGGGTTATTACTCAAG
ACTAAGAATAAGTTGGAGGGCCTCGAAGAGAAGCGTTACTATGTACAGGC
TGTGTATGCATTCGCGCCAATAAAAAAAATGGGGTCGCCTGACCCATGTC
CTTCCAAGGACATTTTTTCTTTGTGCGGCCGATGAAATCATCTCAGTTCT
GTACATAGTTCATAAATGGCGAGTGTTCTTACCCGGGACCCCCCCCACCA
AGGTAGGTACAAAACTGGCATAAGGATCAGAGCGGGGGGAGGGGGGGGCG
GGGGTCATATAAGCTCCAGCCCCTCCCTGGAAACCCCTGAGGCGTGCGTG
GTGTCTTGCATGCTGCATCATAACCCGTCCCTCGAAGACCGCCTAACTCG
TATGCATGCATACTAGTATACAGTATAGTATACATGTAAGCGCTTGAGGA
AATGGCAAAAGTGTCCTTCTGAGAGCCGCTGTCGCATCGTATCGGGCGTG
GGTTGCGGTCGCCGCCGTTGGCTTAACACGGAATATACTGATTTCAGTCT
GGAATGACTAAACTGGAACAAGCGGCCAAAACGGGGGGACCACCTTCCGG
CTCTTCTGCAATCTTCGAGCCCTCCTGCCCCCACCGACCCACCGCCATAA
CCAACAACAACACCAACACCACTACCTCCAACACCACCAACACCACCAAC
ACCCCCCCCACCCACCCCCCCATCCACTGAAACAAAAAGAGGTTTATAAA
ACACAGAGCGAGCATTGGGGTCCAATGTTATTGTAGAAGGAAAATATGGC
CCAAGCTACCTCACTCAGTGGAGGTCTACGTTAATGTACAGTGCTATGGG
GACATTTTGTTGTGTAATTGTTACGATATGGGTTAGGGGTGTGGGCCCTA
CAATACAAAACCCCCCGCCCCGCCCCTCCCCTCCCCTCCCCTCCCCGCCC
GCTTTCACATATGTCGCTGTGGAAACCCATAGACCCCTCGCGATTGCAAT
ACCCAAACCAACATTTTATCGAACACGGGAGGGAGGGAGGGAGTGAAGGG
GAAAACACGCATCAAAGTTGTATCATAGGTAAGTTTATGTATGTCTAATA
GGAGTTTCCTTGACTCTTTGCGTGTCTGACCACAAGTCGGGGTCGGATTA
AGCCGATCGGCTATACGTGTGCAAATCAAGTGAAATCAATCAAATCAATC
AATCAGGAGTACTATTACAGCCGTATATATTCGTGTATATGTATATATAT
TTTTTCGCCACCACCGACACCAACCCCGACCCCCCGCCCCCGCCCCCGCC
CCGGCCGGTGTTCAGATGCTCTCGACAGATATCCCGAGGCTGATGGAGAT
GCTTCCGCGAACGGTGGCTCCTACAAGAGCAGACGAGCAGGTGTGTGGAG
GGTCGGGTAAGGAAGTTAGATGGATGCTTGTGTTTTCGTGAGTGTGTTTG
AGTGAGTTTTTCCTCTCAAAAGAAGTGGTAGGCTGTGCTGCACTATATCG
CTTGTACGAAGTATTATATTAATTCATGGAATTGGTTGTTGTAATGGGAC
AGTCGTGATGTCGTGATAGTATATTATAGTATAGTATACTATAGTATATT
ATAGTATATCGGTACTTGACGACCTACCTAAACCTACCTACGATACCTAC
ACCCCCACGTCATACCTTCATCATGATGATGTCATCATCATAATCCCTCC
AACAACGCAACCGTGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTTGGGCG
TGTCGTCGTCAAAATCAGACAAAACACTACGTCATACCCTCGTCATCGTG
ACGTCCTTGTCATCATGACGCCATCATCACAATCCCCCTTAACAACCCTC
ATCACCAACCACCGTTACGTCATCGTCAGCAATCATGACGTCATCATCAT
CACCACGACGTCATCATCATAATCCCTCTAACAACGCGACCGTGTTACTG
CTGCTGCTGCTATTGCTGCTGCTTGTGCGTGTCGGGGGGGGGGCATCCAC
AGATCAGGAATTTCATGCAGGAGACCTCGGGCACGCCAAATCCTCCTAAG
TACAACGCTCCCGGTGGGGCGCGAGCAGGGGGGAGCGGGTACTACGACGA
GGTAATTTTTTTTTTTTTTTTTTAGCTTGCGTATATTGTGTGTTTGCTTG
TTTGTGATGGGACCCTTGCGCTGTATTGTAGGAGTAGGAGAGGGCGGGTT
GGTTGTTTACCAGACCCCCAAATGCCTATTATGGAGGAACATAGTAGACA
GGTCCAAATGTCATGGCCAATATTACCCAACTATTCCTATTATTACTAAT
ATACTAATATTAATATACTAATATTTCGACCATCAGTACCCAAAGATCAA
CAAAAACCTCATGAAAAAAAAAAAAAAACACGAGATATGGCCATATTCAA
GAACATCGACCTTGAAATCTCGATCATTCCGGCCTATTTTCGTTTTTCTA
GGTTGACACTTGAGACAAATTTGGACCTGTTAGAGTTAATTAACGTTAAC
TGTGCTCCTCCGTAAGAGTGTGACAGTGTCACAGTGTCACAGCTAAGAGT
GTGACAGTGTGACAGCTCCTCTCTCATATCGAGCGTAGTGTTGATTCACT
GTTATGTTATTTGTGTGTATACTGCTGTATAGTAGAGGAGAACTCTCCGA
TATACCTACCTGTAGAGCGAATTCCGTAGTATACATATTTTTAGGTTTTT
TGGATTTATCGATTTCTCATCTGACCACGAGATATCGGGATCGGCAACGG
CAACGGCAACCATTGCAACCATTGCCGGGCCGATCGGTTGTAAGTGAGAT
TGGGAATGATTGGGAATGATTGGGAATCAATGAAAACAAATCGATAAAAT
CAGGTTTGTCAATAAAATAAAACACACCAATCGATCGATCGATCGATCGA
TGAATCAATCAACCAATCAAGTTACAATAAAATCGATCAATCAACCACAT
AATGGGTATAACCAATCAAACCGATCAAACAATCACACATCCCAATGTAT
GTTGCCCCCTCTTTTTCAGGAACCCGACCACCGATGGGCTGCGGGGAGCA
CAGGTGGTGGCAGCTACCCAGGCAGCCCTCCCGACGGCACCGCCCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10369:897..4192+

>mRNA_S-dermatodea_contig10369.272.1 ID=mRNA_S-dermatodea_contig10369.272.1|Name=mRNA_S-dermatodea_contig10369.272.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig10369:897..4192+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTTCCGCGCGAAGCTGGCCGACACGAACTTCATAAAGTTCCCGAAGCT
CAAAACTAAGATGCTCGAGGACCTCGACGAGCCTTTCCGCGCGAAGCTGG
CCGACACGAACTTCATAAAGTTCCCGAAGCTCAAAACTAAGATGCTCGAG
GACCTCGACGAGATGCTCTCGACAGATATCCCGAGGCTGATGGAGATGCT
TCCGCGAACGGTGGCTCCTACAAGAGCAGACGAGCAGATGCTCTCGACAG
ATATCCCGAGGCTGATGGAGATGCTTCCGCGAACGGTGGCTCCTACAAGA
GCAGACGAGCAGATCAGGAATTTCATGCAGGAGACCTCGGGCACGCCAAA
TCCTCCTAAGTACAACGCTCCCGGTGGGGCGCGAGCAGGGGGGAGCGGGT
ACTACGACGAGATCAGGAATTTCATGCAGGAGACCTCGGGCACGCCAAAT
CCTCCTAAGTACAACGCTCCCGGTGGGGCGCGAGCAGGGGGGAGCGGGTA
CTACGACGAGGAACCCGACCACCGATGGGCTGCGGGGAGCACAGGTGGTG
GCAGCTACCCAGGCAGCCCTCCCGACGGCACCGCCGAACCCGACCACCGA
TGGGCTGCGGGGAGCACAGGTGGTGGCAGCTACCCAGGCAGCCCTCCCGA
CGGCACCGCC
back to top