mRNA_S-dermatodea_contig10352.258.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: A0A6H5JUA1_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUA1_9PHAE) HSP 1 Score: 256 bits (654), Expect = 3.180e-77 Identity = 126/203 (62.07%), Postives = 159/203 (78.33%), Query Frame = 1
Query: 4 SYYGVTFVLPKYYDEISGGNQDVVYILTAFVGLSFIPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGSVAPLVVFGPIMLVTAFAASMIPIETAGLKLDDDSWDRREGVSMKDSYIEPTEGSYSDSAM 612
SYYGVTF+LP+YYDEISGG D VYIL+A VG +FIPGA+ AM LC+E LGRVGALKWS+ A + L++A V LFA+ S++TLF +PG V+Y++TPELY+TKYRAVGLG+AS VTRLGGL+AP+LAE+LYD+GG VAPL+VFGPIM++T AA MIP+ETAG +LDDDSWDR+E ++ P YSD+ +
Sbjct: 295 SYYGVTFLLPRYYDEISGGEADFVYILSALVGATFIPGAFAAMRLCSERCLGRVGALKWSSFATATAVLLLATTVQVEALFAVASLLTLFVVTIPGIVIYVLTPELYATKYRAVGLGAASCVTRLGGLIAPMLAELLYDRGGPVAPLLVFGPIMIITGIAAGMIPVETAGRELDDDSWDRKEPAKTTRAFARPHAEPYSDAPV 497
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: A0A6H5JDE1_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDE1_9PHAE) HSP 1 Score: 247 bits (631), Expect = 4.470e-74 Identity = 121/182 (66.48%), Postives = 148/182 (81.32%), Query Frame = 1
Query: 4 SYYGVTFVLPKYYDEISGGNQDVVYILTAFVGLSFIPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGSVAPLVVFGPIMLVTAFAASMIPIETAGLKLDDDSWDRRE 549
SY+GVTF+LP+YYD+ISGG + VYIL+A VG +FIPGA+ AMWLC+E RLGRVGALKWS+ A + +++A V LFA SI+TLF +PGTV Y++TPE+YSTKYR VGLGS SVVTRLGGL+AP+LAEVLYD G VAPL+VFGPIM++T AA MIP+ETAG +LDDDSWD +E
Sbjct: 274 SYFGVTFLLPRYYDKISGGQANFVYILSALVGATFIPGAFAAMWLCSERRLGRVGALKWSSYATAAAVILLATTLRVKALFAPASILTLFITTIPGTVKYVLTPEIYSTKYRTVGLGSTSVVTRLGGLLAPVLAEVLYDSWGPVAPLLVFGPIMIITGIAAGMIPVETAGRQLDDDSWDLKE 455
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: A0A6H5JL66_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL66_9PHAE) HSP 1 Score: 245 bits (626), Expect = 1.950e-72 Identity = 123/192 (64.06%), Postives = 150/192 (78.12%), Query Frame = 1
Query: 4 SYYGVTFVLPKYYDEISGGNQDVVYILTAFVGLSFIPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGSVAPLVVFGPIMLVTAFAASMIPIETAGLKLDDDSWDRREGVSMKDSYIE 579
S +GVTF+LP+YYD+ISGG D VYIL+A VG++ IPGA+ AMWLC+EHRLGRVGALKWS+ A + +++A V LF + SI+ LF AVP TV Y++TPELYSTKYRAVGLGS+SV TRLGGL+AP+LAEVLYD G VAPL+VFGPIM++T AA MIP+ETAG +LDDDSWDR + IE
Sbjct: 360 SNFGVTFLLPRYYDKISGGQADFVYILSACVGVTCIPGAFAAMWLCSEHRLGRVGALKWSSYATAAAVILLATTLRVNALFGLASILVLFITAVPATVKYVMTPELYSTKYRAVGLGSSSVATRLGGLLAPVLAEVLYDGWGPVAPLLVFGPIMIITGIAAGMIPVETAGRQLDDDSWDRAAKTTFSCQNIE 551
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: D7FV27_ECTSI (Major facilitator transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV27_ECTSI) HSP 1 Score: 223 bits (569), Expect = 6.210e-65 Identity = 110/167 (65.87%), Postives = 135/167 (80.84%), Query Frame = 1
Query: 1 SSYYGVTFVLPKYYDEISGGNQDVVYILTAFVGLSFIPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGSVAPLVVFGPIMLVTAFAASMIPI 501
S Y+GVTF+LP+YYD+ISGG D VYIL+AFVG +FIPGA+ AMWLC+EHRLGRVGALKWS+ A + +++A V LF + SI+TLF +P TV Y++TPELYSTKYRAVGLGS+SVVTRLGGL+AP+LAEVLYD G VAPL+VFGPIM++T AA M +
Sbjct: 265 SLYFGVTFLLPRYYDKISGGQADFVYILSAFVGATFIPGAFAAMWLCSEHRLGRVGALKWSSYATAAAVILLATTLRVNALFGLASILTLFVTTIPVTVKYVLTPELYSTKYRAVGLGSSSVVTRLGGLLAPVLAEVLYDHWGPVAPLLVFGPIMIITGIAAGMFRV 431
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: A0A1R3U2D8_9HYPH (Putative niacin/nicotinamide transporter NaiP n=20 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A1R3U2D8_9HYPH) HSP 1 Score: 71.6 bits (174), Expect = 6.250e-10 Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 1
Query: 109 IPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGSVAPLVVFGPIMLVTAFAASMIPIETAGLKLDD 528
IPG +TA W C ++GR + AAVSAL +A T + A+ ++ F N V Y TPE++ T+ RA G+G+AS + R+GG+ APIL +Y GG + I+L+ A + ++ I T L++
Sbjct: 309 IPGYFTAAWFC--EKIGRPYTIVLYMALAAVSALSLAFATGDNQVIALAMTLSFFINGVAAG-EYAYTPEVFPTRIRATGVGTASAIGRIGGIAAPILVGAVYPIGGFAGVFGMTTVILLIGAASVLLLGIPTKNRSLEE 445
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: A0A5D3KNY3_9BRAD (MFS transporter n=1 Tax=Bradyrhizobium rifense TaxID=515499 RepID=A0A5D3KNY3_9BRAD) HSP 1 Score: 69.3 bits (168), Expect = 3.600e-9 Identity = 46/151 (30.46%), Postives = 80/151 (52.98%), Query Frame = 1
Query: 76 YILTAFVGLSFIPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGSVAPLVVFGPIMLVTAFAASMIPIETAGLKLDD 528
+ + + L+ IPG ++A W+C R+GR + GAA+SAL +A V + A+ +++ F N V Y TPE++ T+ RA G+G+AS + R+G + +PIL +Y G + ++L A + + + I T G L++
Sbjct: 298 FSFSILIYLAQIPGYFSAAWVC--ERIGRQYTIVSYMAGAALSALALATVQTDQQVLAMSILLSFFINGVNAG-EYAYTPEVFPTRVRATGVGTASAIGRIGAISSPILVGYIYPIAGFAGVFGMTTAVLLAGALSVTTLGIPTKGRSLEE 445
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: UPI001CDBCFAC (MFS transporter n=1 Tax=Arthrobacter sp. M4 TaxID=218160 RepID=UPI001CDBCFAC) HSP 1 Score: 69.3 bits (168), Expect = 3.840e-9 Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = 1
Query: 76 YILTAFVGLSFIPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGSVAPLVVFGPIMLVTAFAASMIPIETAGLKLDD 528
+ T + ++ IPG Y+A +L R+GR + + G A SA +++ + T + +++ F N +Y TPELY TK RA G+G+AS V R+GG+ API+ Y + G + ++L A + I T G L+D
Sbjct: 309 FTYTLIITIAQIPGYYSAAYL--NERVGRKFTISFYLAGGAASAFLLSNAQDNTQVLIFGCMLSFFMNGCYAG-LYAYTPELYGTKLRATGMGTASAVGRIGGISAPIIIGASYTQLGFGGVFAMVTSVLLAAALGVLIFGISTKGRTLED 456
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: A0A847M2W1_9SPIR (MFS transporter n=1 Tax=Treponema sp. TaxID=166 RepID=A0A847M2W1_9SPIR) HSP 1 Score: 68.9 bits (167), Expect = 4.950e-9 Identity = 55/175 (31.43%), Postives = 90/175 (51.43%), Query Frame = 1
Query: 7 YYGVTFVLPKYYDEISGGNQDVVYILTAFVGLSFIPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGS-VAPLVVFGPIMLVTAFAASMIPIETAGLKLDD 528
YYG+ LP + G VY + F+ L+ +PG ++A +L ++GR L G+ + A+ ++ + + +++ F G +Y TPE Y T R G+GSAS +TR+ G++AP + +L G S +A L VF + AF+A ++P ET G KL+D
Sbjct: 307 YYGIFTWLPSWL-RTKGFALPAVYPYSFFMALAQLPGYFSAAYLV--EKIGRRVTLGLYLAGSGLGAIAFSLAVSPAGIVGAALVLSFFALGAWGA-LYAYTPEAYPTIIRTTGIGSASGMTRIAGMLAPFIGALL--SGSSLIAALSVFAAAYGLAAFSAFILPHETWGAKLED 475
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: UPI0013EA5CF8 (MFS transporter n=1 Tax=Marisediminicola senii TaxID=2711233 RepID=UPI0013EA5CF8) HSP 1 Score: 68.6 bits (166), Expect = 6.060e-9 Identity = 55/175 (31.43%), Postives = 82/175 (46.86%), Query Frame = 1
Query: 4 SYYGVTFVLPKYYDEISGGNQDVVYILTAFVGLSFIPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGSVAPLVVFGPIMLVTAFAASMIPIETAGLKLDD 528
+YYG LP G + + T + L+ +PG + WL R GR L G+A++A + +VT + S+++ FFN +Y +TPELY T+ R G GSA+ RL ++AP+ L GG P VF + V A AA +P + G L+D
Sbjct: 275 AYYGAFIWLPTLL-VAQGFSLVRSFEYTLIITLAQLPGYAVSAWLV--ERWGRRATLATFLTGSAIAAGLFGTAGDVTTILVFGSLMS-FFNLGAWGALYAVTPELYPTRVRGTGAGSAAGFGRLASIIAPLCVPPLLALGGVALPFGVFAVVFAVAAIAALTLP-DLRGQSLED 444
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Match: UPI001574605A (MFS transporter n=1 Tax=Rhizobium radiobacter TaxID=358 RepID=UPI001574605A) HSP 1 Score: 68.6 bits (166), Expect = 6.180e-9 Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 1
Query: 109 IPGAYTAMWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNAVPGTVMYLITPELYSTKYRAVGLGSASVVTRLGGLVAPILAEVLYDKGGSVAPLVVFGPIMLVTAFAASMIPIETAGLKLDD 528
IPG ++A +LC ++GR + GA V+AL +A + A +++ F N V Y TPE++ T++RA G+G+AS V R+GG+ APIL +Y GG + I+L+ A ++ I T L+D
Sbjct: 309 IPGYFSAAYLC--EKIGRPYLIVLFMSGATVAALSLAFAATDPQVIAASMMLSFFINGVAAG-EYAYTPEVFPTRFRATGVGTASAVGRVGGIAAPILVGYVYPIGGFAGVFGMTTGILLIGGMAVLILGIPTKNRSLED 445 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10352.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10352.258.1 >prot_S-dermatodea_contig10352.258.1 ID=prot_S-dermatodea_contig10352.258.1|Name=mRNA_S-dermatodea_contig10352.258.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=164bp MWLCAEHRLGRVGALKWSAIGAAVSALIMAMVTNVTVLFAIMSIVTLFFNback to top mRNA from alignment at S-dermatodea_contig10352:5300..8094- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10352.258.1 ID=mRNA_S-dermatodea_contig10352.258.1|Name=mRNA_S-dermatodea_contig10352.258.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2795bp|location=Sequence derived from alignment at S-dermatodea_contig10352:5300..8094- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10352:5300..8094- >mRNA_S-dermatodea_contig10352.258.1 ID=mRNA_S-dermatodea_contig10352.258.1|Name=mRNA_S-dermatodea_contig10352.258.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at S-dermatodea_contig10352:5300..8094- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |