mRNA_S-dermatodea_contig10350.257.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: D7G743_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G743_ECTSI) HSP 1 Score: 464 bits (1193), Expect = 2.060e-160 Identity = 240/349 (68.77%), Postives = 283/349 (81.09%), Query Frame = 1
Query: 1 LGTPQSLIAFKAGSGKPSHSVACELETSPETCSCVASDESGHLMAAAFGKTVRIYANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGG-NGSGDARGAV-LLATGGEDGKLRVWELSADS--SRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSV---KAPLVMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGS--GRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFASGKAGVALGGYDLLAGSADYKITLFKSQG 1020
+G S IAFK G+ +PSH++A ELETSPETC+CVA+ +G L+AAAFGK VRIYA+ P+GFH+LAE AD A KESGV SMAF+ R GG +GS + G V LLATGGEDG LRVWEL AD+ + + DG +RPPS+ +V CKGH KP+TCVRFHPS +VLTASKDGTCR+WD +R SEAALL TT+GLPP+ KAP++MCRSCCFSPDKPD IFSVQSG RG+AYVT WRYS+ D + GRG+ C V+P++V+ VS HPAT+L+VRSDGARLAVGNVEGTVL+YRLPGFAKVME+PAHDLPVTGLGFAS + G ALGGYDLLAGSADYKI+LFKSQG
Sbjct: 43 VGNKISSIAFKGGAQQPSHAIAHELETSPETCNCVAASGNGQLLAAAFGKNVRIYASNPSGFHQLAEVEADFATKESGVLSMAFLDRNNGGRDGSREPDGGVTLLATGGEDGVLRVWELHADARTAGSGDGREGERPPSLSVHMVHACKGHEKPVTCVRFHPSGALVLTASKDGTCRLWDCERGSEAALLPTTSGLPPTASTAKAPVIMCRSCCFSPDKPDAIFSVQSGGRGNAYVTEWRYSVRPDDDAPGGRGVACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFASREVGAALGGYDLLAGSADYKISLFKSQG 391
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A6H5JSJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ9_9PHAE) HSP 1 Score: 458 bits (1178), Expect = 2.730e-157 Identity = 235/348 (67.53%), Postives = 282/348 (81.03%), Query Frame = 1
Query: 1 LGTPQSLIAFKAGSGKPSHSVACELETSPETCSCVASDESGHLMAAAFGKTVRIYANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGGN-GSGDARGAVLL-ATGGEDGKLRVWELSADS-SRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSV---KAPLVMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGS--GRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFASGKAGVALGGYDLLAGSADYKITLFKSQG 1020
+G S IAFK G+ +PSH++A ELETSPETC+CVA+ +G L+AAAFGK VRIYA+ P+GFH+LAE AD A KESGV SMAF+ R GG+ GS + G V+L ATGGEDG LRVWEL AD+ + DG +RPPS+ ++V CKGH KP+TCVRFHPS ++LTASKDGTCR+WD +R SEAALL TT+GLPP+ KAP++MCRSCCFSPD+PD IFSVQS RG+AYVT WRYS+ D + GRG+ C V+P++V+ VS HPAT+L+VRSDGARLAVGNVEGTVL+YRLPGFAKVME+PAHDLPVTGLGFA+ + G ALGGYDLLAGSADYKI+LFKSQG
Sbjct: 44 VGNKISSIAFKGGAQQPSHTIAHELETSPETCNCVAASGNGQLLAAAFGKNVRIYASNPSGFHQLAEVEADFATKESGVLSMAFLDRNNGGSDGSRETDGGVMLMATGGEDGVLRVWELHADARTGGGDGREGERPPSLSVRMVHACKGHEKPVTCVRFHPSGALMLTASKDGTCRLWDCERGSEAALLPTTSGLPPTASIAKAPVIMCRSCCFSPDRPDAIFSVQSEGRGNAYVTEWRYSVRPDDDAPGGRGVACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFATREVGAALGGYDLLAGSADYKISLFKSQG 391
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A7S2AI78_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AI78_9STRA) HSP 1 Score: 133 bits (334), Expect = 5.580e-32 Identity = 114/353 (32.29%), Postives = 160/353 (45.33%), Query Frame = 1
Query: 13 QSLIAFKAGSG-KPSHSVACELETSPETCSCVASDESGHLMAAAF-GKTVRIYANIPAGFH---KLA----EFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSA-DSSRNYDGHSQDRPPSVQEKLVG-----ECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSVKAPL---VMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFA-SGKAGVALGGYDLLAGSADYKITLFKS 1014
+ ++ K G+ KP SV C C + +D++G +AA F G V IY GF KLA +F D A K++ V+ + F + A +A GE+G +RVW + D S D L+ E KGH KPI + F+PS V +ASKDGTCR+WD + L G+P ++ + VMCR C FSPD +F+VQ RG +YVT W + ++ + G PI+ L +RSDG A G+V G ++++ + P H L VTGL F S G A +DLL GSAD + L S
Sbjct: 49 KKMVTTKDGTDLKPLASVDC----GERLCLSLDADKNGTFIAAGFYGGNVAIY-----GFRADDKLAAVSDDFEGDKAVKDAAVDCVCFD----------PSENAARIAAAGEEGVVRVWAIEGKDEVMTSLADSADASEDKSSSLLKISKPLELKGHRKPIESICFNPSGLRVCSASKDGTCRIWDAVKGDCLHELPAADGIPATIVKKMTYNVMCRVCAFSPDGAK-VFTVQGACRGDSYVTRWDLTDDKVNLEKVGKLSTGTPIKC----------LAIRSDGLFAAAGDVTGNIVLFDTASLKTIKSEPLHQLTVTGLSFRPSASEGDA---FDLLTGSADKTVMLASS 368
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: B8CFV5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFV5_THAPS) HSP 1 Score: 99.0 bits (245), Expect = 3.470e-19 Identity = 67/216 (31.02%), Postives = 100/216 (46.30%), Query Frame = 1
Query: 382 HSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTT----GLPP-----------------SVKAPLVMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIE------EADGSGRGMKCAVEPI----------RVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVT 918
H ++ ++Q V EC GH K I V FHP VL+++KDGT R++ + E ++T G PP + P ++ R C + + I+++ SG+RG+AY+T WR + G G G A P RV C S P + + SDG LA+G+VEG+VL+Y L + + + HDLPVT
Sbjct: 217 HLEENATTLQFHKVAECHGHTKAICAVNFHPRGMQVLSSAKDGTARVFCTESGVELGVMTCEVHDPNGPPPLKIDANAAAGKTKDPRMMKRPPQILVRGCAYGDLEGKTIYTIASGKRGAAYLTKWRTLVPLNSAPPNTAGGGGGPASATNPTTANMSFRQEYRVQC-SPVPISATALSSDGTLLALGSVEGSVLLYNLEKQSVMKQFEGHDLPVT 431
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A6T5VQI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VQI7_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.410e-16 Identity = 69/241 (28.63%), Postives = 114/241 (47.30%), Query Frame = 1
Query: 307 LATGGEDGKLRVWELSADSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSVKAPL-VMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFASGKAGVALGGYDLL-----AGSADYKITLFK 1011
+ T + G +++W L+ N D D+ S+ H I + HP +V+++SKDG+C++W+ + L L + CR CFS D L +S+QSG+RGS Y+ +I+ D S + ++ ++V VS+ P T L + LA+G+ +G++++ KV HDLPVTGLGFA + L + + + SADYK+T +
Sbjct: 72 IITAEDFGNIKLWNLT---QLNDDEWKIDQVYSIT--------AHKAAIMDLSIHPLEPIVVSSSKDGSCKLWNIDNGELINEIPNARNLMKKSDPKLSIECRGSCFSIDGLHL-YSIQSGKRGSTYLFDRLITIQR-DNSTSKLTVDIKVLKVIEVSRVPCTKLKTNDKTSHLAIGSSDGSIVVVTTSNLKKVYSKQFHDLPVTGLGFAP----IILADEEEVDCIVNSCSADYKLTTIR 295
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A7S3K3B9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3B9_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.450e-15 Identity = 81/276 (29.35%), Postives = 121/276 (43.84%), Query Frame = 1
Query: 304 LLATGGEDGKLRVWELSADSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSV------------KAP--LVMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRY---SIEEADGSGRGMKCA---------------------VEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEH--PAHDLPVTGLGFASGKAGVALGGYDLLAGSADYKITLFK 1011
+LATGG+D KLR+W ++D + + P L EC GH I+ RF + ++V T+SKDG+CR+W S + T P S+ AP ++CR+ FS D LI ++ SG RG+A+ WR S EE S G + + + +R+ VS +P + V +G LA+G+V G + ++ + HDLP+T FA A + +L SADYKI K
Sbjct: 125 MLATGGDDCKLRLW--------HFDNETCLQAPM----LYKECPGHTAAISDTRFANAGHLVCTSSKDGSCRIWSAASGSCLTICDAKTVTPSSILNAKPKNKRNRRPAPPFKLICRAARFSDDDHCLI-ALASGSRGAAFAAKWRLVPSSFEEKTVSSNGKQTSHQQNDQGTILPDSNSALLTSKINHVRI--VSANPISA--VAENGVALALGSVSGQITFADQADLVQLKQTNIKQHDLPITACSFAGDHADI------VLTASADYKIIAHK 377
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: W4FSB6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSB6_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 6.370e-14 Identity = 91/340 (26.76%), Postives = 139/340 (40.88%), Query Frame = 1
Query: 73 LETSPETCSCVASDESGHLMAAAFGKTVRIY-----ANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSADSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWD-----WQRTSEAAL---LTTTTGLPPSVKAPLVMCRSCCFSPDKPDL------------IFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFASGKAGVALGGYD------LLAGSADYKI 999
++T + S VA G L+A G IY A A F + F+ D A +S N++ F + +ATGGEDG +R+W L+ S++ S + GH I + +H S V++ +KDG C +W W++ + L L P+ K + R C F P + L I +VQ+ RGS+Y+T W + D G+G +E + V +L V + +A G+ +G VLI+R+ A + AH LP TGL F A D L++ SADY +
Sbjct: 70 IDTVDDLVSGVAIGSKGGLIALTMGSKTAIYRVTSGATPTASF--VVAFQTDFAATDSYQNAVKF------------SPDGGTIATGGEDGVVRLWTLTIPPSKSEVDVDNKYRKSFKVSAPVLLNGHNGCINGLSWHASGTKVVSCAKDGQCIVWTRVESTWKKAATLGLAGELDVQKPDKPTNKGNFIY-RGCAFVPRRFPLHASKKXXXXXXEIVTVQTPARGSSYLTKWSCVV---DDQGKG---TIEELTSIAVKDTIVCSLAVSAK--YVATGSSDGQVLIHRVDTLAHLKTFAAHFLPSTGLAFFPFAADATRDPLDFIDDLSLMSASADYSV 386
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A485KKL2_9STRA (Aste57867_8575 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKL2_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.220e-13 Identity = 81/320 (25.31%), Postives = 131/320 (40.94%), Query Frame = 1
Query: 46 KPSHSVACELETSPETCSCVASDESGHLMAAAFGKTVRIYANIPAGFHK---LAEFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSADSSR----NYDGHSQDRPPSVQEKLVGEC-----KGHAKPITCVRFHPSANVVLTASKDGTCRMWD--------WQRTSEAALLTTTTGLPPSVKAP---LVMCRSCCF--SPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGF 930
KP V E++T + S VA L+A G +Y K + +F+ D A+++S N + F + LATGGEDG +R+W L+ S+ + DG D + K +GH I + +H N +L+ +KDG C +W W++ + L L KA + R C F + D I ++Q+ RGS+Y+T W + D +G+ + + +R+ ++ +A G+ +G VL+YR V AH LP TG+ F
Sbjct: 62 KPLLDVVMEIDTGEQLISGVAIGSKDELLALTMGNKTAVYRVTDGPKGKAIFVTDFQTDFAKEDSYQNVVKF------------SPDGTQLATGGEDGIVRIWTLTIPSTDENEDDEDGDQADLDDAAYRKAFRVSAPIVLEGHNGCINGLSWHAMGNKLLSCAKDGQCILWSQTKKPPYTWKKAATLGLAGEL-ALQKEDKATNRGKFVYRGCQFEVADDDDASIVTLQTPARGSSYLTKWSVDV---DKNGKAVVEELSSVRL-----KDTIICSIAISDKYIACGSSDGQVLVYRFETLTHVKTTTAHYLPSTGIAF 360
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A067CDC6_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDC6_SAPPC) HSP 1 Score: 77.8 bits (190), Expect = 2.940e-12 Identity = 91/337 (27.00%), Postives = 149/337 (44.21%), Query Frame = 1
Query: 70 ELETSPETCSCVASDESGHLMAAAFG-KTV--RIYANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSA-DSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMW--------DWQRTSEAALLTTTTGLPPSVKAPL--VMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFA-------SGKAGVALGGYD----LLAGSADYKITL 1005
E++T + S V+ G L+A G KTV R+ + EF+ D A+ +S + + F + LATGGEDG +RVW+L+ D N + ++ + KL GH+ I+ + +H ++ +L+ +KDG C +W W +T + L VKA + R+C F D+ I ++Q+ RGS+Y+T W ADG ++ A PI+ V + + +R +A G+ +G +L++ + AH LP TGL F S + Y+ +L+GSADY + L
Sbjct: 67 EIDTGDDLVSGVSIGTKGGLVALTMGNKTVIYRVRHGSKTTSTYVTEFQTDFAKDDSYQSVLRF------------SPDGTKLATGGEDGIVRVWQLTLPDDDSNDETFAKKFKATEIAKLDN---GHSGCISGLSWHATSTKLLSCAKDGQCILWALTDKKKKTWTKTGKLGLAGELALQKLDVKANRGKFIYRACHFHHDE---IVTLQTPARGSSYLTKWA----AADGGKLFLEVASVPIKDVIVC---SMAINLRY----IACGSSDGQLLLFTYDALRLLKTISAHYLPSTGLAFLPPMLLDPSAHEDDRIREYEDDMTVLSGSADYSLYL 374
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A1V9ZU05_9STRA (60S ribosomal protein L24 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU05_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.440e-11 Identity = 76/299 (25.42%), Postives = 126/299 (42.14%), Query Frame = 1
Query: 73 LETSPETCSCVASDESGHLMAAAFG-KTV--RIYANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSADSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWD-----WQRTSEAALLTTTTGLPPSVKAPL-----VMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGF 930
++T + S V+ G L A G KTV RI + + EF+ D A +S + + F + LATGGEDG +R+W+L+ S S+D + +LV +GH I+ + + +LT +KDG C +W W +T + + LP + + R+C F D+I ++Q+ RGS+Y+T W DG + V V+ +++ + +A G+ +G +++ L + AH LP TGL F
Sbjct: 68 IDTGEDLVSGVSLGSKGGLAALTMGNKTVLYRILHGVKTTSSHITEFQTDFALTDSYQSVLRF------------SPDGTKLATGGEDGNVRIWQLTIPSD-----DSEDFAKHFKAELVATLEGHGACISGLSWRNDNTQLLTCAKDGQCLLWGLKDEKWAKTGKLGIAGE---LPVQAQDKKNNRGKFIYRACHFHGGS-DVIVTLQTPARGSSYLTKW----SPVDGKF---------VEVLSVALPDVIAVSMAVNLRYVACGSSDGQLVLLALDSLRPIKTIAAHYLPSTGLAF 332 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10350.257.1 >prot_S-dermatodea_contig10350.257.1 ID=prot_S-dermatodea_contig10350.257.1|Name=mRNA_S-dermatodea_contig10350.257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=340bp LGTPQSLIAFKAGSGKPSHSVACELETSPETCSCVASDESGHLMAAAFGKback to top mRNA from alignment at S-dermatodea_contig10350:137..4129+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10350.257.1 ID=mRNA_S-dermatodea_contig10350.257.1|Name=mRNA_S-dermatodea_contig10350.257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3993bp|location=Sequence derived from alignment at S-dermatodea_contig10350:137..4129+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10350:137..4129+ >mRNA_S-dermatodea_contig10350.257.1 ID=mRNA_S-dermatodea_contig10350.257.1|Name=mRNA_S-dermatodea_contig10350.257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2040bp|location=Sequence derived from alignment at S-dermatodea_contig10350:137..4129+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |