mRNA_S-dermatodea_contig10350.257.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10350.257.1
Unique NamemRNA_S-dermatodea_contig10350.257.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: D7G743_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G743_ECTSI)

HSP 1 Score: 464 bits (1193), Expect = 2.060e-160
Identity = 240/349 (68.77%), Postives = 283/349 (81.09%), Query Frame = 1
Query:    1 LGTPQSLIAFKAGSGKPSHSVACELETSPETCSCVASDESGHLMAAAFGKTVRIYANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGG-NGSGDARGAV-LLATGGEDGKLRVWELSADS--SRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSV---KAPLVMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGS--GRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFASGKAGVALGGYDLLAGSADYKITLFKSQG 1020
            +G   S IAFK G+ +PSH++A ELETSPETC+CVA+  +G L+AAAFGK VRIYA+ P+GFH+LAE  AD A KESGV SMAF+ R  GG +GS +  G V LLATGGEDG LRVWEL AD+  + + DG   +RPPS+   +V  CKGH KP+TCVRFHPS  +VLTASKDGTCR+WD +R SEAALL TT+GLPP+    KAP++MCRSCCFSPDKPD IFSVQSG RG+AYVT WRYS+   D +  GRG+ C V+P++V+ VS HPAT+L+VRSDGARLAVGNVEGTVL+YRLPGFAKVME+PAHDLPVTGLGFAS + G ALGGYDLLAGSADYKI+LFKSQG
Sbjct:   43 VGNKISSIAFKGGAQQPSHAIAHELETSPETCNCVAASGNGQLLAAAFGKNVRIYASNPSGFHQLAEVEADFATKESGVLSMAFLDRNNGGRDGSREPDGGVTLLATGGEDGVLRVWELHADARTAGSGDGREGERPPSLSVHMVHACKGHEKPVTCVRFHPSGALVLTASKDGTCRLWDCERGSEAALLPTTSGLPPTASTAKAPVIMCRSCCFSPDKPDAIFSVQSGGRGNAYVTEWRYSVRPDDDAPGGRGVACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFASREVGAALGGYDLLAGSADYKISLFKSQG 391          
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A6H5JSJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ9_9PHAE)

HSP 1 Score: 458 bits (1178), Expect = 2.730e-157
Identity = 235/348 (67.53%), Postives = 282/348 (81.03%), Query Frame = 1
Query:    1 LGTPQSLIAFKAGSGKPSHSVACELETSPETCSCVASDESGHLMAAAFGKTVRIYANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGGN-GSGDARGAVLL-ATGGEDGKLRVWELSADS-SRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSV---KAPLVMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGS--GRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFASGKAGVALGGYDLLAGSADYKITLFKSQG 1020
            +G   S IAFK G+ +PSH++A ELETSPETC+CVA+  +G L+AAAFGK VRIYA+ P+GFH+LAE  AD A KESGV SMAF+ R  GG+ GS +  G V+L ATGGEDG LRVWEL AD+ +   DG   +RPPS+  ++V  CKGH KP+TCVRFHPS  ++LTASKDGTCR+WD +R SEAALL TT+GLPP+    KAP++MCRSCCFSPD+PD IFSVQS  RG+AYVT WRYS+   D +  GRG+ C V+P++V+ VS HPAT+L+VRSDGARLAVGNVEGTVL+YRLPGFAKVME+PAHDLPVTGLGFA+ + G ALGGYDLLAGSADYKI+LFKSQG
Sbjct:   44 VGNKISSIAFKGGAQQPSHTIAHELETSPETCNCVAASGNGQLLAAAFGKNVRIYASNPSGFHQLAEVEADFATKESGVLSMAFLDRNNGGSDGSRETDGGVMLMATGGEDGVLRVWELHADARTGGGDGREGERPPSLSVRMVHACKGHEKPVTCVRFHPSGALMLTASKDGTCRLWDCERGSEAALLPTTSGLPPTASIAKAPVIMCRSCCFSPDRPDAIFSVQSEGRGNAYVTEWRYSVRPDDDAPGGRGVACEVKPVKVSLVSPHPATSLSVRSDGARLAVGNVEGTVLVYRLPGFAKVMEYPAHDLPVTGLGFATREVGAALGGYDLLAGSADYKISLFKSQG 391          
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A7S2AI78_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AI78_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.580e-32
Identity = 114/353 (32.29%), Postives = 160/353 (45.33%), Query Frame = 1
Query:   13 QSLIAFKAGSG-KPSHSVACELETSPETCSCVASDESGHLMAAAF-GKTVRIYANIPAGFH---KLA----EFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSA-DSSRNYDGHSQDRPPSVQEKLVG-----ECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSVKAPL---VMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFA-SGKAGVALGGYDLLAGSADYKITLFKS 1014
            + ++  K G+  KP  SV C        C  + +D++G  +AA F G  V IY     GF    KLA    +F  D A K++ V+ + F            +  A  +A  GE+G +RVW +   D        S D        L+      E KGH KPI  + F+PS   V +ASKDGTCR+WD  +      L    G+P ++   +   VMCR C FSPD    +F+VQ   RG +YVT W  + ++ +    G      PI+           L +RSDG   A G+V G ++++       +   P H L VTGL F  S   G A   +DLL GSAD  + L  S
Sbjct:   49 KKMVTTKDGTDLKPLASVDC----GERLCLSLDADKNGTFIAAGFYGGNVAIY-----GFRADDKLAAVSDDFEGDKAVKDAAVDCVCFD----------PSENAARIAAAGEEGVVRVWAIEGKDEVMTSLADSADASEDKSSSLLKISKPLELKGHRKPIESICFNPSGLRVCSASKDGTCRIWDAVKGDCLHELPAADGIPATIVKKMTYNVMCRVCAFSPDGAK-VFTVQGACRGDSYVTRWDLTDDKVNLEKVGKLSTGTPIKC----------LAIRSDGLFAAAGDVTGNIVLFDTASLKTIKSEPLHQLTVTGLSFRPSASEGDA---FDLLTGSADKTVMLASS 368          
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: B8CFV5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFV5_THAPS)

HSP 1 Score: 99.0 bits (245), Expect = 3.470e-19
Identity = 67/216 (31.02%), Postives = 100/216 (46.30%), Query Frame = 1
Query:  382 HSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTT----GLPP-----------------SVKAPLVMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIE------EADGSGRGMKCAVEPI----------RVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVT 918
            H ++   ++Q   V EC GH K I  V FHP    VL+++KDGT R++  +   E  ++T       G PP                   + P ++ R C +   +   I+++ SG+RG+AY+T WR  +          G G G   A  P           RV C S  P +   + SDG  LA+G+VEG+VL+Y L   + + +   HDLPVT
Sbjct:  217 HLEENATTLQFHKVAECHGHTKAICAVNFHPRGMQVLSSAKDGTARVFCTESGVELGVMTCEVHDPNGPPPLKIDANAAAGKTKDPRMMKRPPQILVRGCAYGDLEGKTIYTIASGKRGAAYLTKWRTLVPLNSAPPNTAGGGGGPASATNPTTANMSFRQEYRVQC-SPVPISATALSSDGTLLALGSVEGSVLLYNLEKQSVMKQFEGHDLPVT 431          
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A6T5VQI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VQI7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.410e-16
Identity = 69/241 (28.63%), Postives = 114/241 (47.30%), Query Frame = 1
Query:  307 LATGGEDGKLRVWELSADSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSVKAPL-VMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFASGKAGVALGGYDLL-----AGSADYKITLFK 1011
            + T  + G +++W L+     N D    D+  S+          H   I  +  HP   +V+++SKDG+C++W+         +     L       L + CR  CFS D   L +S+QSG+RGS Y+     +I+  D S   +   ++ ++V  VS+ P T L      + LA+G+ +G++++       KV     HDLPVTGLGFA     + L   + +     + SADYK+T  +
Sbjct:   72 IITAEDFGNIKLWNLT---QLNDDEWKIDQVYSIT--------AHKAAIMDLSIHPLEPIVVSSSKDGSCKLWNIDNGELINEIPNARNLMKKSDPKLSIECRGSCFSIDGLHL-YSIQSGKRGSTYLFDRLITIQR-DNSTSKLTVDIKVLKVIEVSRVPCTKLKTNDKTSHLAIGSSDGSIVVVTTSNLKKVYSKQFHDLPVTGLGFAP----IILADEEEVDCIVNSCSADYKLTTIR 295          
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A7S3K3B9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3B9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.450e-15
Identity = 81/276 (29.35%), Postives = 121/276 (43.84%), Query Frame = 1
Query:  304 LLATGGEDGKLRVWELSADSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSV------------KAP--LVMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRY---SIEEADGSGRGMKCA---------------------VEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEH--PAHDLPVTGLGFASGKAGVALGGYDLLAGSADYKITLFK 1011
            +LATGG+D KLR+W        ++D  +  + P     L  EC GH   I+  RF  + ++V T+SKDG+CR+W     S   +    T  P S+             AP   ++CR+  FS D   LI ++ SG RG+A+   WR    S EE   S  G + +                     +  +R+  VS +P +   V  +G  LA+G+V G +         ++ +     HDLP+T   FA   A +      +L  SADYKI   K
Sbjct:  125 MLATGGDDCKLRLW--------HFDNETCLQAPM----LYKECPGHTAAISDTRFANAGHLVCTSSKDGSCRIWSAASGSCLTICDAKTVTPSSILNAKPKNKRNRRPAPPFKLICRAARFSDDDHCLI-ALASGSRGAAFAAKWRLVPSSFEEKTVSSNGKQTSHQQNDQGTILPDSNSALLTSKINHVRI--VSANPISA--VAENGVALALGSVSGQITFADQADLVQLKQTNIKQHDLPITACSFAGDHADI------VLTASADYKIIAHK 377          
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: W4FSB6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSB6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.370e-14
Identity = 91/340 (26.76%), Postives = 139/340 (40.88%), Query Frame = 1
Query:   73 LETSPETCSCVASDESGHLMAAAFGKTVRIY-----ANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSADSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWD-----WQRTSEAAL---LTTTTGLPPSVKAPLVMCRSCCFSPDKPDL------------IFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFASGKAGVALGGYD------LLAGSADYKI 999
            ++T  +  S VA    G L+A   G    IY     A   A F  +  F+ D A  +S  N++ F            +     +ATGGEDG +R+W L+   S++          S +        GH   I  + +H S   V++ +KDG C +W      W++ +   L   L       P+ K   +  R C F P +  L            I +VQ+  RGS+Y+T W   +   D  G+G    +E +    V      +L V +    +A G+ +G VLI+R+   A +    AH LP TGL F    A       D      L++ SADY +
Sbjct:   70 IDTVDDLVSGVAIGSKGGLIALTMGSKTAIYRVTSGATPTASF--VVAFQTDFAATDSYQNAVKF------------SPDGGTIATGGEDGVVRLWTLTIPPSKSEVDVDNKYRKSFKVSAPVLLNGHNGCINGLSWHASGTKVVSCAKDGQCIVWTRVESTWKKAATLGLAGELDVQKPDKPTNKGNFIY-RGCAFVPRRFPLHASKKXXXXXXEIVTVQTPARGSSYLTKWSCVV---DDQGKG---TIEELTSIAVKDTIVCSLAVSAK--YVATGSSDGQVLIHRVDTLAHLKTFAAHFLPSTGLAFFPFAADATRDPLDFIDDLSLMSASADYSV 386          
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A485KKL2_9STRA (Aste57867_8575 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKL2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.220e-13
Identity = 81/320 (25.31%), Postives = 131/320 (40.94%), Query Frame = 1
Query:   46 KPSHSVACELETSPETCSCVASDESGHLMAAAFGKTVRIYANIPAGFHK---LAEFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSADSSR----NYDGHSQDRPPSVQEKLVGEC-----KGHAKPITCVRFHPSANVVLTASKDGTCRMWD--------WQRTSEAALLTTTTGLPPSVKAP---LVMCRSCCF--SPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGF 930
            KP   V  E++T  +  S VA      L+A   G    +Y        K   + +F+ D A+++S  N + F            +     LATGGEDG +R+W L+  S+     + DG   D   +   K          +GH   I  + +H   N +L+ +KDG C +W         W++ +   L      L    KA      + R C F  + D    I ++Q+  RGS+Y+T W   +   D +G+ +   +  +R+           ++      +A G+ +G VL+YR      V    AH LP TG+ F
Sbjct:   62 KPLLDVVMEIDTGEQLISGVAIGSKDELLALTMGNKTAVYRVTDGPKGKAIFVTDFQTDFAKEDSYQNVVKF------------SPDGTQLATGGEDGIVRIWTLTIPSTDENEDDEDGDQADLDDAAYRKAFRVSAPIVLEGHNGCINGLSWHAMGNKLLSCAKDGQCILWSQTKKPPYTWKKAATLGLAGEL-ALQKEDKATNRGKFVYRGCQFEVADDDDASIVTLQTPARGSSYLTKWSVDV---DKNGKAVVEELSSVRL-----KDTIICSIAISDKYIACGSSDGQVLVYRFETLTHVKTTTAHYLPSTGIAF 360          
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A067CDC6_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDC6_SAPPC)

HSP 1 Score: 77.8 bits (190), Expect = 2.940e-12
Identity = 91/337 (27.00%), Postives = 149/337 (44.21%), Query Frame = 1
Query:   70 ELETSPETCSCVASDESGHLMAAAFG-KTV--RIYANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSA-DSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMW--------DWQRTSEAALLTTTTGLPPSVKAPL--VMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGFA-------SGKAGVALGGYD----LLAGSADYKITL 1005
            E++T  +  S V+    G L+A   G KTV  R+          + EF+ D A+ +S  + + F            +     LATGGEDG +RVW+L+  D   N +  ++    +   KL     GH+  I+ + +H ++  +L+ +KDG C +W         W +T +  L          VKA     + R+C F  D+   I ++Q+  RGS+Y+T W      ADG    ++ A  PI+   V    +  + +R     +A G+ +G +L++       +    AH LP TGL F        S      +  Y+    +L+GSADY + L
Sbjct:   67 EIDTGDDLVSGVSIGTKGGLVALTMGNKTVIYRVRHGSKTTSTYVTEFQTDFAKDDSYQSVLRF------------SPDGTKLATGGEDGIVRVWQLTLPDDDSNDETFAKKFKATEIAKLDN---GHSGCISGLSWHATSTKLLSCAKDGQCILWALTDKKKKTWTKTGKLGLAGELALQKLDVKANRGKFIYRACHFHHDE---IVTLQTPARGSSYLTKWA----AADGGKLFLEVASVPIKDVIVC---SMAINLRY----IACGSSDGQLLLFTYDALRLLKTISAHYLPSTGLAFLPPMLLDPSAHEDDRIREYEDDMTVLSGSADYSLYL 374          
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Match: A0A1V9ZU05_9STRA (60S ribosomal protein L24 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU05_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.440e-11
Identity = 76/299 (25.42%), Postives = 126/299 (42.14%), Query Frame = 1
Query:   73 LETSPETCSCVASDESGHLMAAAFG-KTV--RIYANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGGNGSGDARGAVLLATGGEDGKLRVWELSADSSRNYDGHSQDRPPSVQEKLVGECKGHAKPITCVRFHPSANVVLTASKDGTCRMWD-----WQRTSEAALLTTTTGLPPSVKAPL-----VMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAVEPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPAHDLPVTGLGF 930
            ++T  +  S V+    G L A   G KTV  RI   +      + EF+ D A  +S  + + F            +     LATGGEDG +R+W+L+  S       S+D     + +LV   +GH   I+ + +      +LT +KDG C +W      W +T +  +      LP   +         + R+C F     D+I ++Q+  RGS+Y+T W       DG           + V  V+      +++  +   +A G+ +G +++  L     +    AH LP TGL F
Sbjct:   68 IDTGEDLVSGVSLGSKGGLAALTMGNKTVLYRILHGVKTTSSHITEFQTDFALTDSYQSVLRF------------SPDGTKLATGGEDGNVRIWQLTIPSD-----DSEDFAKHFKAELVATLEGHGACISGLSWRNDNTQLLTCAKDGQCLLWGLKDEKWAKTGKLGIAGE---LPVQAQDKKNNRGKFIYRACHFHGGS-DVIVTLQTPARGSSYLTKW----SPVDGKF---------VEVLSVALPDVIAVSMAVNLRYVACGSSDGQLVLLALDSLRPIKTIAAHYLPSTGLAF 332          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10350.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G743_ECTSI2.060e-16068.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSJ9_9PHAE2.730e-15767.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2AI78_9STRA5.580e-3232.29Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
B8CFV5_THAPS3.470e-1931.02Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6T5VQI7_9STRA2.410e-1628.63Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S3K3B9_9STRA3.450e-1529.35Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W4FSB6_9STRA6.370e-1426.76Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A485KKL2_9STRA1.220e-1325.31Aste57867_8575 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067CDC6_SAPPC2.940e-1227.00Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZU05_9STRA1.440e-1125.4260S ribosomal protein L24 n=1 Tax=Achlya hypogyna ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10350contigS-dermatodea_contig10350:137..4129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score468.8
Seed ortholog evalue2.2e-129
Seed eggNOG ortholog2880.D7G743
KEGG koko:K13886
EggNOG free text desc.actin filament binding
EggNOG OGsCOG1985@1,KOG0303@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size1020
Cds size1020
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10350.257.1prot_S-dermatodea_contig10350.257.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10350 137..4129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.9384692-CDS-S-dermatodea_contig10350:136..3431622924152.9384692-CDS-S-dermatodea_contig10350:136..343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 137..343 +
1694079053.8092017-CDS-S-dermatodea_contig10350:136..3431694079053.8092017-CDS-S-dermatodea_contig10350:136..343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 137..343 +
1622924152.946672-CDS-S-dermatodea_contig10350:1083..12401622924152.946672-CDS-S-dermatodea_contig10350:1083..1240Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 1084..1240 +
1694079053.8184085-CDS-S-dermatodea_contig10350:1083..12401694079053.8184085-CDS-S-dermatodea_contig10350:1083..1240Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 1084..1240 +
1622924152.9578211-CDS-S-dermatodea_contig10350:1977..21311622924152.9578211-CDS-S-dermatodea_contig10350:1977..2131Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 1978..2131 +
1694079053.8282187-CDS-S-dermatodea_contig10350:1977..21311694079053.8282187-CDS-S-dermatodea_contig10350:1977..2131Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 1978..2131 +
1622924152.9657137-CDS-S-dermatodea_contig10350:2745..31091622924152.9657137-CDS-S-dermatodea_contig10350:2745..3109Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 2746..3109 +
1694079053.8443215-CDS-S-dermatodea_contig10350:2745..31091694079053.8443215-CDS-S-dermatodea_contig10350:2745..3109Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 2746..3109 +
1622924152.9731553-CDS-S-dermatodea_contig10350:3991..41291622924152.9731553-CDS-S-dermatodea_contig10350:3991..4129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 3992..4129 +
1694079053.855755-CDS-S-dermatodea_contig10350:3991..41291694079053.855755-CDS-S-dermatodea_contig10350:3991..4129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10350 3992..4129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10350.257.1

>prot_S-dermatodea_contig10350.257.1 ID=prot_S-dermatodea_contig10350.257.1|Name=mRNA_S-dermatodea_contig10350.257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=340bp
LGTPQSLIAFKAGSGKPSHSVACELETSPETCSCVASDESGHLMAAAFGK
TVRIYANIPAGFHKLAEFRADHAEKESGVNSMAFIRRTAGGNGSGDARGA
VLLATGGEDGKLRVWELSADSSRNYDGHSQDRPPSVQEKLVGECKGHAKP
ITCVRFHPSANVVLTASKDGTCRMWDWQRTSEAALLTTTTGLPPSVKAPL
VMCRSCCFSPDKPDLIFSVQSGQRGSAYVTTWRYSIEEADGSGRGMKCAV
EPIRVACVSKHPATTLTVRSDGARLAVGNVEGTVLIYRLPGFAKVMEHPA
HDLPVTGLGFASGKAGVALGGYDLLAGSADYKITLFKSQG
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mRNA from alignment at S-dermatodea_contig10350:137..4129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10350.257.1 ID=mRNA_S-dermatodea_contig10350.257.1|Name=mRNA_S-dermatodea_contig10350.257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3993bp|location=Sequence derived from alignment at S-dermatodea_contig10350:137..4129+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGGTACACCTCAGTCCTTGATCGCCTTCAAAGCAGGCTCCGGCAAACC GTCCCATTCCGTCGCCTGCGAGCTCGAGACGTCGCCCGAGACATGCAGCT GCGTTGCCTCCGACGAGAGCGGACACCTGATGGCCGCTGCTTTCGGGAAG ACCGTTCGTATCTACGCCAACATCCCCGCCGGCTTCCACAAGCTGGCGGA ATTTCGGGTGCGGCTCAGCGTTTTGGTCACTTGAAGTGTTGTTGTACAAG GATTTGTTAACTCAAAACATTGCATACCCCCGTCCGAGGTGGAAGCACCA ACACAGGTTCATAGCGAGGAGGGAGGGCAGGGCGCACCTGTTGTTGTGGA GGCAGGAGGAGACTGATGTAACAAAAAGCGGTACTACAGCCAGTCTGTAG ATAACGCATCTCATTGCCAAAAGTAAAACATTTAATGTGGTTTTGTCTTC ATGTACGCCGCAGCTTCTTGCCCGGCATCTTGAGCGTACACGCGCTGGTT AAGGGCCGATGTATTCGCCACTGGCTGTTGCGGCGTATCGTGAAGACACC AACGCATCGCCGACCCCTCCTCTACAGCGGTAGACAGAGAGCCGTGTCGC ACAGAGATCCTCGTACTCTCCGCGGCTGCGCGACAGACGGCGTTGCCAAG GCACCTACATGGAGCGCGATGCCAGCAGCACTACCATCCCCCTGCCGCCT TTTTCGCTCCAACTCTCACCAAGCGTTGTTCAGTCCTTGTTTTTGGCGTG CCTTGTTGCGAACGGTGTTCAATCCGAAGCCCTCCGTATAAATTTTTAGT TGGCCCTCGGAACTATGATACAGTAGCTCTACACACTATTATATTATAGC TTTAAATATGGCCTTTGCTTGCTGAACCGCGCGTTCTCATAGTCAAACAT CACATCACTCGTGGTTGGCCGTCTAAACCACACCGCGACTCCATCAGGCC GACCACGCCGAGAAGGAAAGCGGGGTAAACTCGATGGCCTTCATCCGCAG AACAGCCGGCGGTAACGGGAGCGGAGATGCTAGAGGAGCTGTGCTGCTCG CTACGGGAGGCGAGGATGGGAAGCTGAGGGTGTGGGAGCTCAGTGCCGAC TCATGTGAGCACAGCAGGAATATGTTGGTTTTGGTGCCAGTATGTTTTTC TACTGATTTGTCACATATTACACGAGTACATACAGTTGGGCTCTTTACAC TGTCTATCCCGCTCATGGTATAAAAAACGGTACAGAAGGTATCATACGCA GTAGTGGTGACACATGGTCGGAGAGTGATCGTGTGGGTCGGGGGTGTCCC AAGACGGTGGCAAACCAAACCCAGAGATGTGTGATGCAGCATTGGAGTTC TACAACTACTCGGCAGCTGCTTGTCGCAGACGCTGCGTGGTGCGTTCTCG CATGGTAAATTACAGCAGTGTCAGGATGCGAGTCGTGACGTTCTTGGAAC CTAACAGACCGCGTGCTTACAGAGCATTGCGGCACTGCTCTGGGCTGAAC AAGCGCTACATGGTGGACGGTCGTACCAGACGCTGGCCCGTGTGACGCGC GGCAGCTTGCAGGGCCAGCGCGCTTGCCACATGCGACAGCAGTGTATTGC CGCGTGAGGCTGCGCCCTTGGTATCGTTGAGACGAAATGCGCCCGTTTGC ACTGGCCGTGTTGCACTGGCCGCGCGCGTTGCCACGGAGGCTGCACGCAG GGCATGTCAAGCTCGTGACTACTGTCAACCCCGCGGCATCGCTGTAGCGG GCGCATTCATGGTTCACCTCCTCTATGCGCAACCATCCGAACAGCATGCT CAATCTGACCCCCCCCCCCCGTTTATGTTGCAACGCTGCAGCCAGAAACT ACGACGGGCATAGCCAGGACAGGCCACCGTCCGTGCAAGAAAAGCTTGTC GGCGAGTGCAAGGGGCACGCTAAGCCCATCACGTGCGTCCGGTTCCACCC TTCCGCGAATGTGGTGCTCACAGCCTCCAAGGACGGCACCTGCAGGTATC GTATCCGTGCCGCAGCTGCTTGATCCAGAGCGTTTCCGATATTTTGTTGG CGCTGGCTCCTCACGGGCGCGTTGGTGTACTACAACACGGCTGTATTCGC AGCTGAGTTGCAGCCGTTGTCAACGATCGTGTGGGGTGGGTTGGGAAACG TAGCGTCTCAACCCTCGCGCGGTTTATGGAGTGGGTGCTGCGGTTGGGTT TGCTGGTGTGCGTCCGCCGTTCGTGTTAAGCGTGTCTGGAAAGGTCGTTT GTTCTTGCCGTAGGGTTGGGTTGCTGTCTCTACCTCTTTTTTCGCTGTTA CGATGGCCGCGCTGGGGCGATGCGATACCCCGATGACGCCAGCAAGCGCA CGTTGCGGAAAGCTTTAAAAAAATGCTGTTGGCTGGTGGTCGGGTTCGAG CAAGAGCAGCCTATTTGGTGCCCATGGAACGTTGGGCGTCGTGTGCATTT TGAGTCCGAGCACGCGTTGACGAGAGTGTTGCCGCTGCCATCAAGCGCTG AAGCAACGATCCACCGTGGCACACAGATATTTGCAGGCCCCTCCCTCCCT CTCTCCCTGCTCCTCACCACAATACTATTTCTACGTTAACGCCCCGACAT CGCCGGCAGAATGTGGGACTGGCAGCGAACCTCGGAGGCGGCGCTCCTGA CCACGACGACCGGCCTGCCGCCGAGCGTGAAGGCCCCCCTTGTCATGTGT CGCTCCTGCTGCTTCTCGCCTGACAAGCCGGACCTAATATTTTCGGTGCA GAGCGGACAGCGCGGCAGCGCTTACGTCACCACGTGGAGATACTCAATAG AAGAGGCCGACGGGAGTGGGAGGGGTATGAAGTGTGCGGTGGAACCGATC CGGGTGGCCTGCGTGTCGAAACACCCAGCAACGACGCTGACCGTGCGGAG CGATGGGGCGCGCTTGGCGGTGGGGAATGTGGAGGGGACGGTGCTCATCT ACCGGCTGCCTGGCTTTGCGAAGGTGGGAGGGGTCGGCGCGCCGGGCCGC GGGAAGGGGGTCGAAGTACTTACACTTGTGTTAAACGCATGTCGTATCCA CACGGACATGGGAAGGGGGGGTGGGGTACTGAAGTTTTTCCTGTCTCAGC TGTTGAGGCATTGATTGAGCCATTGACCGCGTGGCCTCGGGAGAGGACGG AGCGTTGTTCCGCCCGGTTGGACCGCCAATGGAAAATCGTTCCTTTCTAC TTCGTCAAAGGGTTCTCAAGTTGTTTTTCGTATTCTAGCTATAATACTGT ACCTCGATTTTCGCATTTTCGGAACACTTGTTATCCCCCAGTATTGTATT GCTACCGATGTAGTGCCTTCACGGGGTGGTGGAAGGGGGGGGGGGTTGCG CGACAGTAGTGTTGGTTTGTACTGCGCTTGCCGACAGTGAACGCTCGAGC GGCTGTTAGACCCCGCCGTAGATTTGGTACTTGAAACGGCACCGCCACAA TACACAAGCTCAAAGTAAAGGGGACATGCGTTTCCGTTATCCTTGAAGCA CTCGTAAGGTGCTGCTCTCCGATGCCTTACGCGACCTTTGCGCGTATGAT AGCATCCGGCGTTTCTCAGTGTTATGAATAGATACGGGTGCTCTTGATAG GGATTAAATAGAAGACGGACGGAAACGAGAAACAAGTCTCAGGTCTGCAT GGGCTACTCCAATGCTCAGTTTCCGCCTACTAAATACAGTAGTACTCTTA ATAGTAGTACTCTTAATAATAGTGCGTTTATGTATTGATTTATATATTGA TTTAGTCCCCAGGAAATACTGTATCTGCCGCGCTCTGCTTGCGTACATTT ACAGTGTGCGCTACATATCGCAATTGTCCCCTTTTTGCGCCGACGCCATG CACAGGTGATGGAACACCCCGCCCACGACCTGCCGGTGACGGGGCTGGGT TTTGCATCGGGGAAGGCAGGCGTGGCCCTCGGAGGCTACGATCTGCTGGC CGGGTCTGCCGACTACAAGATCACCCTTTTCAAATCCCAGGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10350:137..4129+

>mRNA_S-dermatodea_contig10350.257.1 ID=mRNA_S-dermatodea_contig10350.257.1|Name=mRNA_S-dermatodea_contig10350.257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2040bp|location=Sequence derived from alignment at S-dermatodea_contig10350:137..4129+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGGTACACCTCAGTCCTTGATCGCCTTCAAAGCAGGCTCCGGCAAACC
GTCCCATTCCGTCGCCTGCGAGCTCGAGACGTCGCCCGAGACATGCAGCT
GCGTTGCCTCCGACGAGAGCGGACACCTGATGGCCGCTGCTTTCGGGAAG
ACCGTTCGTATCTACGCCAACATCCCCGCCGGCTTCCACAAGCTGGCGGA
ATTTCGGCTTGGTACACCTCAGTCCTTGATCGCCTTCAAAGCAGGCTCCG
GCAAACCGTCCCATTCCGTCGCCTGCGAGCTCGAGACGTCGCCCGAGACA
TGCAGCTGCGTTGCCTCCGACGAGAGCGGACACCTGATGGCCGCTGCTTT
CGGGAAGACCGTTCGTATCTACGCCAACATCCCCGCCGGCTTCCACAAGC
TGGCGGAATTTCGGGCCGACCACGCCGAGAAGGAAAGCGGGGTAAACTCG
ATGGCCTTCATCCGCAGAACAGCCGGCGGTAACGGGAGCGGAGATGCTAG
AGGAGCTGTGCTGCTCGCTACGGGAGGCGAGGATGGGAAGCTGAGGGTGT
GGGAGCTCAGTGCCGACTCATGCCGACCACGCCGAGAAGGAAAGCGGGGT
AAACTCGATGGCCTTCATCCGCAGAACAGCCGGCGGTAACGGGAGCGGAG
ATGCTAGAGGAGCTGTGCTGCTCGCTACGGGAGGCGAGGATGGGAAGCTG
AGGGTGTGGGAGCTCAGTGCCGACTCATCCAGAAACTACGACGGGCATAG
CCAGGACAGGCCACCGTCCGTGCAAGAAAAGCTTGTCGGCGAGTGCAAGG
GGCACGCTAAGCCCATCACGTGCGTCCGGTTCCACCCTTCCGCGAATGTG
GTGCTCACAGCCTCCAAGGACGGCACCTGCAGCCAGAAACTACGACGGGC
ATAGCCAGGACAGGCCACCGTCCGTGCAAGAAAAGCTTGTCGGCGAGTGC
AAGGGGCACGCTAAGCCCATCACGTGCGTCCGGTTCCACCCTTCCGCGAA
TGTGGTGCTCACAGCCTCCAAGGACGGCACCTGCAGAATGTGGGACTGGC
AGCGAACCTCGGAGGCGGCGCTCCTGACCACGACGACCGGCCTGCCGCCG
AGCGTGAAGGCCCCCCTTGTCATGTGTCGCTCCTGCTGCTTCTCGCCTGA
CAAGCCGGACCTAATATTTTCGGTGCAGAGCGGACAGCGCGGCAGCGCTT
ACGTCACCACGTGGAGATACTCAATAGAAGAGGCCGACGGGAGTGGGAGG
GGTATGAAGTGTGCGGTGGAACCGATCCGGGTGGCCTGCGTGTCGAAACA
CCCAGCAACGACGCTGACCGTGCGGAGCGATGGGGCGCGCTTGGCGGTGG
GGAATGTGGAGGGGACGGTGCTCATCTACCGGCTGCCTGGCTTTGCGAAG
AATGTGGGACTGGCAGCGAACCTCGGAGGCGGCGCTCCTGACCACGACGA
CCGGCCTGCCGCCGAGCGTGAAGGCCCCCCTTGTCATGTGTCGCTCCTGC
TGCTTCTCGCCTGACAAGCCGGACCTAATATTTTCGGTGCAGAGCGGACA
GCGCGGCAGCGCTTACGTCACCACGTGGAGATACTCAATAGAAGAGGCCG
ACGGGAGTGGGAGGGGTATGAAGTGTGCGGTGGAACCGATCCGGGTGGCC
TGCGTGTCGAAACACCCAGCAACGACGCTGACCGTGCGGAGCGATGGGGC
GCGCTTGGCGGTGGGGAATGTGGAGGGGACGGTGCTCATCTACCGGCTGC
CTGGCTTTGCGAAGGTGATGGAACACCCCGCCCACGACCTGCCGGTGACG
GGGCTGGGTTTTGCATCGGGGAAGGCAGGCGTGGCCCTCGGAGGCTACGA
TCTGCTGGCCGGGTCTGCCGACTACAAGATCACCCTTTTCAAATCCCAGG
GTGTGATGGAACACCCCGCCCACGACCTGCCGGTGACGGGGCTGGGTTTT
GCATCGGGGAAGGCAGGCGTGGCCCTCGGAGGCTACGATCTGCTGGCCGG
GTCTGCCGACTACAAGATCACCCTTTTCAAATCCCAGGGT
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