mRNA_S-dermatodea_contig10345.250.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-dermatodea_contig10345.250.1
Unique Name	mRNA_S-dermatodea_contig10345.250.1
Type	mRNA
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)

Homology

[Close]

BLAST of mRNA_S-dermatodea_contig10345.250.1 vs. uniprot
Match: D8LHP7_ECTSI (Mitogen-activated protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHP7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.870e-16
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1

Query:    4 KQLRRKSVSFTGNEGFQVLRNDPPREASGKSAPAVGGGKGAAHPVGVAPASTFFLRSNRTTSPMVTPHAAFAAHANTTPPN 246
            K+ +RKSVSFTG EG+Q+L ++    +  K A + GG      PV VAPASTFFLR+N+ TSPMVTPHAA+AA A   PP+
Sbjct:   48 KKFQRKSVSFTGEEGYQLLGSEQSVTSLSKGAVSAGGTGKITSPVTVAPASTFFLRANQATSPMVTPHAAYAAFAKNIPPH 128

[Close]

BLAST of mRNA_S-dermatodea_contig10345.250.1 vs. uniprot
Match: A0A6H5K0E8_9PHAE (Mitogen-activated protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.770e-16
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1

Query:    4 KQLRRKSVSFTGNEGFQVLRNDPPREASGKSAPAVGGGKGAAHPVGVAPASTFFLRSNRTTSPMVTPHAAFAAHANTTPPN 246
            K+L+RKSVSFTG EG+Q+L ++    +  K A + GG      PV VAPASTFFLR+N  TSPMVTPHAA+A  A   PP+
Sbjct:   45 KKLQRKSVSFTGEEGYQLLGSEQSVTSLSKGAVSAGGTGKMTSPVTVAPASTFFLRANPATSPMVTPHAAYATFAKNIPPH 125

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig10345.250.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig10345.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LHP7_ECTSI	1.870e-16	55.56	Mitogen-activated protein kinase n=1 Tax=Ectocarpu...	[more]
A0A6H5K0E8_9PHAE	4.770e-16	55.56	Mitogen-activated protein kinase n=1 Tax=Ectocarpu...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig10345	contig	S-dermatodea_contig10345:4053..5730 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	83.6
Seed ortholog evalue	5e-14
Seed eggNOG ortholog	2880.D8LHP7
KEGG ko	ko:K04371,ko:K20536
KEGG Pathway	ko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG Module	M00687
GOs	GO:0000165,GO:0000187,GO:0001775,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0002237,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002521,GO:0002573,GO:0002682,GO:0002684,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0004708,GO:0004712,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006935,GO:0006950,GO:0006955,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0007569,GO:0008134,GO:0008150,GO:0008152,GO:0009314,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009628,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010212,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010830,GO:0010831,GO:0012505,GO:0016192,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0022603,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030141,GO:0030154,GO:0030316,GO:0031098,GO:0031279,GO:0031281,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031347,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032101,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032501,GO:0032502,GO:0032655,GO:0032735,GO:0032879,GO:0032880,GO:0032940,GO:0033554,GO:0033674,GO:0033993,GO:0034774,GO:0035556,GO:0035924,GO:0036211,GO:0036230,GO:0038066,GO:0040011,GO:0042119,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042770,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045321,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045646,GO:0045648,GO:0045661,GO:0045663,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046903,GO:0048010,GO:0048255,GO:0048273,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050727,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051019,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051403,GO:0051525,GO:0051704,GO:0051707,GO:0051716,GO:0060142,GO:0060143,GO:0060205,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070391,GO:0070848,GO:0070887,GO:0070935,GO:0071214,GO:0071216,GO:0071219,GO:0071222,GO:0071223,GO:0071310,GO:0071363,GO:0071396,GO:0071478,GO:0071479,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0090087,GO:0090398,GO:0090400,GO:0097708,GO:0098586,GO:0099503,GO:0101002,GO:0104004,GO:0140096,GO:1900015,GO:1901564,GO:1901700,GO:1901701,GO:1901739,GO:1901741,GO:1901796,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903506,GO:1903530,GO:1903532,GO:1903706,GO:1903708,GO:1904813,GO:1904951,GO:2000026,GO:2000112,GO:2000377,GO:2000379,GO:2001141,GO:2001182,GO:2001184
EggNOG free text desc.	MAP kinase activity
EggNOG OGs	KOG0660@1,KOG0660@2759
EC	2.7.11.24
COG Functional cat.	H
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Hectar predicted targeting category	other localisation
Exons	3
Model size	258
Cds size	258
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig10345.250.1	prot_S-dermatodea_contig10345.250.1	Saccorhiza dermatodea SderLu1190fm monoicous	polypeptide	S-dermatodea_contig10345 4053..5730 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622924152.5156693-CDS-S-dermatodea_contig10345:4052..4106	1622924152.5156693-CDS-S-dermatodea_contig10345:4052..4106	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig10345 4053..4106 +
1694079053.580158-CDS-S-dermatodea_contig10345:4052..4106	1694079053.580158-CDS-S-dermatodea_contig10345:4052..4106	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig10345 4053..4106 +
1622924152.5283656-CDS-S-dermatodea_contig10345:5000..5120	1622924152.5283656-CDS-S-dermatodea_contig10345:5000..5120	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig10345 5001..5120 +
1694079053.5913014-CDS-S-dermatodea_contig10345:5000..5120	1694079053.5913014-CDS-S-dermatodea_contig10345:5000..5120	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig10345 5001..5120 +
1622924152.5366318-CDS-S-dermatodea_contig10345:5646..5730	1622924152.5366318-CDS-S-dermatodea_contig10345:5646..5730	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig10345 5647..5730 +
1694079053.6029665-CDS-S-dermatodea_contig10345:5646..5730	1694079053.6029665-CDS-S-dermatodea_contig10345:5646..5730	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig10345 5647..5730 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-dermatodea_contig10345:4053..5730+
coding sequence from alignment at S-dermatodea_contig10345:4053..5730+

protein sequence of mRNA_S-dermatodea_contig10345.250.1

>prot_S-dermatodea_contig10345.250.1 ID=prot_S-dermatodea_contig10345.250.1|Name=mRNA_S-dermatodea_contig10345.250.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
PKQLRRKSVSFTGNEGFQVLRNDPPREASGKSAPAVGGGKGAAHPVGVAP
ASTFFLRSNRTTSPMVTPHAAFAAHANTTPPNTIVP

mRNA from alignment at S-dermatodea_contig10345:4053..5730+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-dermatodea_contig10345.250.1 ID=mRNA_S-dermatodea_contig10345.250.1|Name=mRNA_S-dermatodea_contig10345.250.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1678bp|location=Sequence derived from alignment at S-dermatodea_contig10345:4053..5730+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTAAGCAGCTACGGCGAAAGAGTGTATCGTTCACTGGGAACGAGGGCTT
CCAGGTGCGCGTGCGCATTGTGTGCACACCACACGGGGTCGTTTTGTTTT
TGCTTATTTACTCTACACATTTTCTGTGTTTTTGTTTTCATCTGGTATTT
AGGGAGGGAGAGGCGGGGAGGAGTCGGGGGGGGGGGGGGGGGGGTTTTTT
TTTCTCCCCCCCCAAAAGAATTTGGGGGGGGAGGCTTACAGGGGGTGGGG
GTTGTGGGGGGGGGGGGGGGGGGGGGGGTTTTTTTTTGGGAGGAGNNNNN
NNNNNGGTTTTTTGTTCTTTTTTTTTTTCTTTTTTTTTTTTTGTGGTTTG
TTTTTTAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGTTCTCTCTGTCTCACTCCCATACGATCATTTAGT
GTGCAAGCTTCCATGGATGTGAGCTTGTTGGAGGGTGGGGGAGTGGAGGG
TTTATTGTTGTGAAGAGACGCGCGTCAATATTTTGGTGCCGCTAACCGCA
CGTCCACGTTTTTTTTCAGGATATTGACGATTCATGTGTGGAGCGAACTT
TACGTCTACGTAGAACTCGCCTCGTGCTCTGCTGTGTCGGCGGGGTCTCC
CGCCTGGTGCATAGACTTGTACACGATGCACGCCGATGTGGAAGAAACCT
CAAACAGATTCCACCACCGCCCCTACTTTTTTTCTCAGATCGCGCGCTTC
ACCAAAACGCACGCCTGTGTGGCGTTTGTTCTCGCCCCCCAACGGCTCTT
CACTGCTCGCTCACGCTGTAATCCCACCGCTTGTCAAACATATTACAACA
TACTCGTACACCGCGTGCATTTCAACCTTGTAGCCCTTGTCCCTCGTGCC
CTTCCTCGCGTGCTCGGCCCATCTCTTTCACATTTTGCCGCGTGTCAGGT
GCTTAGGAACGACCCTCCGAGAGAAGCATCGGGGAAAAGTGCTCCCGCTG
TTGGCGGTGGGAAGGGGGCAGCTCATCCGGTGGGTGTAGCTCCGGCCTCT
ACTTTTTTTCTTCGGTCGGTGAGCGCAGCAGGGGGCGGGTGGGGTGGGGT
GGGGGGCTTACTTTGTGTTGTGAACATTTTTTTTCTCTTGGGGAGGGGGG
GGGGGGCAGGTCTGGCACGTGGAATTGTGTTTGTTGCTTTCAGGTGTGCC
TCGTCTTTGTTGTCTTCTGAGGGCATGATAGGGTCGAACGAAACCTCGCC
GTTTTGGGGCGGACCTCTCGGTTCAGCGTGGACGCCATCCTCAGGAAACT
GTTTTATCGCGCGTAGAGTATGCATGTACTACTACGGCTTAGGTTCGCAC
CACAAGAGTTTTCTGGGCGAGTTTGTAGTATAAAGGGTGGAGCGCTGTTC
CCTGCTGCTCGTCGTAATGCGAAAATTCAGCCAAGCTTCGTCACACGCGC
ATCCGTCGTGCTCCCAGTTGACTGTTATTTGCTCTCCCGCGGGATACCAG
CGCCCCCCCCCCCCCCCCGCGCTCCTATACGCCAACCCTCTAAAATCAAA
CACGGTAACCTCCCCTTCCCTCCCCCCGCACCGCTCTTCACTAGAATCGT
ACAACATCTCCAATGGTCACCCCGCACGCGGCGTTCGCGGCGCACGCGAA
CACCACACCTCCCAACACCATCGTCCCG

Coding sequence (CDS) from alignment at S-dermatodea_contig10345:4053..5730+

>mRNA_S-dermatodea_contig10345.250.1 ID=mRNA_S-dermatodea_contig10345.250.1|Name=mRNA_S-dermatodea_contig10345.250.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig10345:4053..5730+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTAAGCAGCTACGGCGAAAGAGTGTATCGTTCACTGGGAACGAGGGCTT
CCAGCCTAAGCAGCTACGGCGAAAGAGTGTATCGTTCACTGGGAACGAGG
GCTTCCAGGTGCTTAGGAACGACCCTCCGAGAGAAGCATCGGGGAAAAGT
GCTCCCGCTGTTGGCGGTGGGAAGGGGGCAGCTCATCCGGTGGGTGTAGC
TCCGGCCTCTACTTTTTTTCTTCGGTCGGTGCTTAGGAACGACCCTCCGA
GAGAAGCATCGGGGAAAAGTGCTCCCGCTGTTGGCGGTGGGAAGGGGGCA
GCTCATCCGGTGGGTGTAGCTCCGGCCTCTACTTTTTTTCTTCGGTCGAA
TCGTACAACATCTCCAATGGTCACCCCGCACGCGGCGTTCGCGGCGCACG
CGAACACCACACCTCCCAACACCATCGTCCCGAATCGTACAACATCTCCA
ATGGTCACCCCGCACGCGGCGTTCGCGGCGCACGCGAACACCACACCTCC
CAACACCATCGTCCCG