mRNA_S-dermatodea_contig1028.206.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1028.206.1
Unique NamemRNA_S-dermatodea_contig1028.206.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1028.206.1 vs. uniprot
Match: D7FQG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG8_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.830e-10
Identity = 54/128 (42.19%), Postives = 68/128 (53.12%), Query Frame = 3 
Query:   54 PSVSVASSLVNKPTAVDYSDLASILMDG-FNAHQDAVGAGSEFVTLGGDPYSDYSLSGT------PYIMQYG----ARAGPPSEHLPLLVEDKAGFGDFCGDISSISSDLTEALAAGVFDGDPCDPYF 404
            PS++ A ++ N+   +DYSDLAS+LMDG F+A +D     SE V+LG DPYSDY+LS        PY    G    A A  PS      +E   G   F G +    SD TE L A V D D  DPY+
Sbjct:  702 PSLARAETVSNR---IDYSDLASVLMDGGFDACKDGAEVRSEAVSLGEDPYSDYALSAESDIFLGPYHRSTGSSSSAPATEPSRRGSSQIEQDKGLAVFDGIVDQ--SDATEGLEASVLDVDVEDPYY 824
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BLAST of mRNA_S-dermatodea_contig1028.206.1 vs. uniprot
Match: A0A6H5K2V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V3_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.230e-8
Identity = 46/113 (40.71%), Postives = 55/113 (48.67%), Query Frame = 3 
Query:   99 VDYSDLASILMDG-FNAHQDAVGAGSEFVTLGGDPYSDYSLSGTPYIMQY----------GARAGPPSEHLPLLVEDKAGFGDFCGDISSISSDLTEALAAGVFDGDPCDPYF 404
            +DYSDLASILMDG  +A +D     SE V+LG DPYSDY+LS    I  +           A A  PS       E   G   F G +    SD  + L A V D D  DPY+
Sbjct:  208 IDYSDLASILMDGGLDACKDGAEVRSETVSLGEDPYSDYALSAESDIFLWPNHRSTGSNSSAPATEPSRRGSSRTEQDKGLAGFDGIVDP--SDAPDGLEASVLDVDAEDPYY 318
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1028.206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQG8_ECTSI4.830e-1042.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2V3_9PHAE7.230e-840.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1028contigS-dermatodea_contig1028:11052..16462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue4.8e-11
Seed eggNOG ortholog2880.D7FQG8
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1254
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1028.206.1prot_S-dermatodea_contig1028.206.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1028 11899..16457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.2180314-UTR-S-dermatodea_contig1028:11051..118981622924149.2180314-UTR-S-dermatodea_contig1028:11051..11898Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1028 11052..11898 -
1694079051.203841-UTR-S-dermatodea_contig1028:11051..118981694079051.203841-UTR-S-dermatodea_contig1028:11051..11898Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1028 11052..11898 -
1622924149.250012-UTR-S-dermatodea_contig1028:16457..164621622924149.250012-UTR-S-dermatodea_contig1028:16457..16462Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1028 16458..16462 -
1694079051.2303367-UTR-S-dermatodea_contig1028:16457..164621694079051.2303367-UTR-S-dermatodea_contig1028:16457..16462Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1028 16458..16462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.2295258-CDS-S-dermatodea_contig1028:11898..121531622924149.2295258-CDS-S-dermatodea_contig1028:11898..12153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1028 11899..12153 -
1694079051.2133427-CDS-S-dermatodea_contig1028:11898..121531694079051.2133427-CDS-S-dermatodea_contig1028:11898..12153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1028 11899..12153 -
1622924149.241514-CDS-S-dermatodea_contig1028:16310..164571622924149.241514-CDS-S-dermatodea_contig1028:16310..16457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1028 16311..16457 -
1694079051.222682-CDS-S-dermatodea_contig1028:16310..164571694079051.222682-CDS-S-dermatodea_contig1028:16310..16457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1028 16311..16457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1028.206.1

>prot_S-dermatodea_contig1028.206.1 ID=prot_S-dermatodea_contig1028.206.1|Name=mRNA_S-dermatodea_contig1028.206.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=134bp
MCSAGLNPGLLEAGSSPSVSVASSLVNKPTAVDYSDLASILMDGFNAHQD
AVGAGSEFVTLGGDPYSDYSLSGTPYIMQYGARAGPPSEHLPLLVEDKAG
FGDFCGDISSISSDLTEALAAGVFDGDPCDPYF*
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mRNA from alignment at S-dermatodea_contig1028:11052..16462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1028.206.1 ID=mRNA_S-dermatodea_contig1028.206.1|Name=mRNA_S-dermatodea_contig1028.206.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5411bp|location=Sequence derived from alignment at S-dermatodea_contig1028:11052..16462- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGACATGTGCTCGGCCGGACTAAACCCTGGTCTCCTCGAGGCGGGCTCC
TCCCCATCCGTGAGCGTGGCGTCATCGCTCGTGAACAAGCCCACCGCGGT
GGATTACTCCGACCTGGCCTCCATCCTCATGGACGGCTTCAATGCTCATC
AGGTATGCGGTGCTCTTCGCACACAGAACGCTTGGTGCTGGGCTACAGTA
GCAGTTCGTGGCCTGGTTTTGTTTTAACCCTTTTGGTACTAGCCCCCTGT
TTGAAGCGCCTGTTAGCACGTAATGAGGCGTGCTTGAAGCGGGGCCNNNN
NNNNNNGCAGGAATGAGAGAGAACGGAGCACAAGGACAACGGGGCTGTAG
CTGTCGACTGGCATCGAGAGAGGTTTTGGTCGTTTCGGAGAGCATTATTT
ATTATCAATACTATACTAGTTTAATAGTACCAAAAGGGTTAAAAGCAGTT
CATCAGGTCAGAAGCGCCCGCAGAAGCGACTTGTTTATAGCCTCGACCTT
ATGGATTGTATGTAGTGCACCGGTGCGACACAAGTAGGGCCACGCGGTTC
GCGAAAGGAGAGAGCTAGTAGTCCGGGCGGTTTCTATCGGAGGTAATTTT
ATCACAAAACACGGCATTTCAAGAAACGTAATTTTTTTCAACATGTTGCC
TTTCTTACCTACTTTTTTGTTTTTACGAACCTCTCGTTTGTGAACACGAG
CGATTTGTAAATCTCAACACGAGCGCTAGGTAGCCTCTTTTACCCTTCTT
TTTTAGTTTTTACAAACCTCTCGTTTGTGTGAACACGAGCGATTTGTAAA
TCTCAACACGAGCGAGTTTTTCATGGATAAAATTAATTTCACGGAATGTA
GTGTGTGCGTTTTTTTCCCTTGGTTGCGAAACAGCTGAGATCGAAACAGC
GGCGCGCTGGCTCTATGACGTTCCGATACAGACAGCTAGGGCCAAAAATA
TGGCGTTGAACCGGAACTTAATCGCGTACCGACCACTGCCCAAAATATAG
CCTCAAAACATGAAATCGCGGTCACCAGGCAGATTCGCCATGTATCCTGC
AAGTACATTGCCAATTACAACCAAAAACGGCATCAGGCGCCCCTGGGGCC
AGGGCGCGTCAGTGGCACCTGACATTCCACACCACCTGGAGACAGGCCGG
GCCGTACGTATGTTTCAATCCGAAGGGATTTGCGGAATCGGTTTTCGCGG
GAAAATGCCGCTTACTTCCCCGCTTCTTGGGGGGGGGGGTCCTTGCCTAG
CTCTCGGTGACTTCCCAAACACCGCAATCGCTTCTGATCAAAACACAGCG
GATGCGTGTACGTACCCAGGGCAAGGATCCGCTCTACTGGCCGTGTTGTC
GGCAAGAGACAGTGCCTTTTGCAAAACGGGCTCGTTGATCGAAATTCCTT
AGACCACTGCTTCTGGAGAAAACCAGTGAAAGAAACGAAAATATTTACTG
GATAAAATTTTTTTTTTGTGTATTTATCTCGGCCTAGTTGTGGCTGAAGG
AAAACTATCAAATGCGCACTTTATTTTCACATGTTTCTTGGCAGGGTCGT
ACTTGAACCATGGCCAGGCAACAGCGCCCGCAAGAGAGGTCTTAACGATG
GTGCAGCGTAAAAAGGAAGAGCATGATTCCCTACGATGATACTGCTTGCT
CTGCGACACGCCACATTCAACACACACACGCGACCTATATCCCAAGCTGG
ACAACGCAGCCCGCTAAGTGCAAACAGATGAGCTCCCAAGTATTGCGGCA
AGAAAAAGAAAAAAGTACGGAACACGAAAGAGAGCGGTAAGCAAGGATCC
TTGGACTCGACAGAGAGCGCAGGCCACCAAACCCCGGCTGTGTGGAGGTT
TTTCCAACGCGCTGAGTCCCCGTGCTTCTTCCAAGGGTGCTCGGTGCGGG
CGCGCGTCTGCGCAGATAGAGGATATTAGTATCTGCGAGGGAAAATGTTG
TGGTAGGAACCATCGATCGCGCCACCGAGCAGCAGCAGCATCACTTGCTA
CTGGGATAATGAACATCATCGTTCATCGACAACTACTGCTATTGCAGCGA
TGACGATGTTGAGACGCTGCAAGGCGACCAGCCCGTTAGCAATCTGATTC
ACGCCATTAGCAGCCATCGCCGCCGTGCCACGGAGCCGCGTGGTGATACA
TACGCGTACCCTGCGGGTGATCCAATTTCAACCCGTTCCCGTTTCATGAG
TCGGGTGGTATTGTATTGCTTGTATTATAGGCGATTTTGCCGAAAGAACA
GCAAACACTTTTAGCTTTTTTTTCACTCTTTCTTCTCCATGACAAGAAGT
TGTCTTATAGGGGGAAAACGGAAAAATCGACCAGCCAAAAAAAATGATTT
TGTTTATGCTCTCGAGCGCAACGCGCACACTGCGAAACACGGGCACGCGC
TCAACAACGCTTGCACCCCCGGGCTCTGACGCCGAGCCACCCAGGGAGCT
AGCGCCTCGGCCGCCGTTGTTGCCGAAGGCCAACGACGCGAGTAGTGTAC
AAAAATCGCCACCTGCGATTTTGCCAAATGCTTCAAGCACAAGTCGCAAA
CCCGCTGTTGAGGCGATCCTCCATAAAAAGCAGCCGCTTCGAGCCCCCGA
GGGTGCAGCTGTGCTCGCGGAGACAGCTAGGCGCGAGGCCGAGAGACTGC
TCGGCGAGCAGCAGCGGCTCAGGAAACGCGTGCGAAGAGCGCACTCTCTA
CAGTACAGCAGAAGTGCGGTGCGAGTTCAAGCTATGATATGAATGTTCAA
GCAATGACGCTCTTGGAATTTCTGCCTCGAGCTCGGCTGCTACAGAAGTT
CTCAGTTTATTTTTATTTATCCTGATCGCCAACATGACCTTGGGGCGAGA
AGCGCCGAGCAGCATCGGTTGGGGTTGTGGCCATGTGTGGTGCCGTGTGT
GCGTTTTGGCACGCCCCGTGGTGTAAAAGTATGCATCGCCGGCGCGTGTT
TTTTTTTCCAGAAGCGGCAGGGTTTGGGCACATTTAATTTTTGTTATTTG
TCCACGCGTGTCCACAACAATATTTTACTTTATTTTCCGGTTCGGCGACT
CCTTTCTGGCCCTTACAGTGGTAAAAACGCCCCTTTCGACAGCGCCGAGA
GCTTTGTACCAAGGTACCGACTTTTTGCGAATCTACAGGTAATGTATGGT
ACGTGGGGCAGGCAGGAAACATCTACCTGGTATGTCGTAAGACAAAACAC
GAGCCAAATGTGGCGAAATCAAGAGGGAACACACAAAAATACGTAAACCA
AGTACAAAAATGGAGCAACGTCTGCCCTGCAATTTTCCTGTGGCACTTTG
CTTTGTTCTGACCCTGCCTGCACCTGGTAGACATGAGATCGAAAATTCTA
GTCAGTGCGACCTGAAAGATCAGCCCATCAGGGAGTCTCCTCCAGAAGCG
CAGCCCAAACCGCCAGGCACAGCCATTTAGCGCGGCACATGAAGTTTGGG
CAAAGCCGGGTTTCTGCAATTTTCTGCCATGCGTTTTTGCTGGCGGGAGA
AAATACACATACATGTATGTCATACCTCTTCAGCTCAACAGGGCACAGGG
TTTGTTCTACTCGAGCCGAGCCTTACGCAACTCTGAGGGCTGTTTCTCGC
TCTAGCGGTCCCCGCGCGTCGCGATTTGTTTGCAGCCGCTACCCACACAT
TCCAGAGTGCCTCTGCATGTGCTCGTCGTGACCTATGTAGCGATTTTTGT
CTAGTTCCACGGGCAGATGCAAACATGTCTAATTGCGCAAAGTGATTCAT
ACTCGGACCACAAAGAAGCCCGTCGCAACGCATCACCCTCCAAGCTCGAC
CATGCCATTCGATCGAATATTCTAGATGCCCCCCCCCCCCCTCTAGGCAA
GCTCAGGTATTTAGCGCAAGGTTTTACGAAAGGCAAGTGTGCTGGGGTCG
GTCAGGGATGTGTTCCTCCGCAAATCTAAGGAAACCCTGATTTATCGACT
CAACTTCCACCGCGAAAGGCTCAGATCACTCCCCAAGCATGCTGGTGACC
TAGCATTGCGGTGGTAAGCGAACTTGATGTGCCTGGGGCCGTGATTCTAG
CGCTAGGGCGAGGCAAAGTAATGCGGCGCGACCTGGTCTGAGGCGCATGA
AAGGTCCCCACTTCCCGGTATCCCGCTAAGGCGTTGATTTTTGGTTGCAT
TGTTTTTGAAAATCGGCCGATTTGGCTCGTGTGGCAAGCCCCCAACTGCT
GTGCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCGCCGTTCTCTT
TCGCTGTCGCCGCCCCGTCCTCTCGGAAAAACCGTTTCGAACACCTTTGG
CAAGTGCAGGATGCAGTAGGGGCGGGAAGCGAGTTTGTAACGCTGGGAGG
GGACCCTTACAGCGACTACTCCCTCTCGGGCACTCCTTACATCATGCAGT
ACGGTGCCCGCGCGGGACCCCCTTCGGAGCACCTGCCGCTGCTGGTGGAA
GATAAGGCCGGGTTTGGCGACTTCTGCGGCGACATTTCGAGCATTTCGTC
GGACTTAACCGAAGCGCTAGCGGCTGGCGTGTTCGATGGGGATCCGTGTG
ACCCGTACTTCTAAGCTTAAGTGTAATAACACGCCCGGAAGAGCCCGATC
ACCGCGCTCGTTTCGTCGGGAGGATGTTGTGCGTGGTGCGGTTCATGCGT
GTGCGGCGTGTACTGTGCCGCCGCCGGAATTTTCAATTGTCCGACGCGCG
GGCTTTGGGAGGTGCCGTCACCCACGTGTTTTTTATTGGATTTGGTTTTG
TTGTCGTTTTTGCTGTCTTGGTCGTTGTTGCTGTCGCTGTTGTGTTCCAA
CACTACGATTGGTGCGGTCGCTTGAACGAGCACCTCAGAATCCTGCTGTT
ATGATATTGAGCTTTGATAACCAGAAAAAAAACCCGTTGTTTTGACATTT
GAGAGTTTGCTATTCGCCGCGCGTGGTAGGTAGGTACAGCTACCACTCGC
CGGGGGGAACGGCACAGGCGCTTCTCTCTGGCAAGCACTGACTCGGCGCG
TTGTGTATGTTTGTCTGTCTTGTGTGGGTTGGGGTCGTGTGTTTGGGTAA
TGGGTGTGGCTGTGGGCTCTTCTTTTTTGTGCATGGACTGTGTGGGGGGG
GGTGTACTCATTGTACTCATTGTACTCATTGATCGTGCATGCCGTAGTCG
TTAGACCATAGACCTCGCATGGACTGGGTGGGAGGGGGTAAAAGCTTGCC
CAGAGATAGGCCATATTGTTGGTTCCTACAGCTTTCTGCTTTTCTTCTTG
GGAGGGATGACGGACTTGGCTGGCGGCGTTGCGTTTTTTCATTTCGCTTG
ATTGACAAGAGTACGAGATCCCCTTCTCGAGAAAGGTTACTTTTTCATTT
TTTTTTAGGGGGAACGCATTCCAAATCGTGTTTTGGCATGGGAATCAAGT
GTCGCGGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1028:11052..16462-

>mRNA_S-dermatodea_contig1028.206.1 ID=mRNA_S-dermatodea_contig1028.206.1|Name=mRNA_S-dermatodea_contig1028.206.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig1028:11052..16462- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCTCGGCCGGACTAAACCCTGGTCTCCTCGAGGCGGGCTCCTCCCC
ATCCGTGAGCGTGGCGTCATCGCTCGTGAACAAGCCCACCGCGGTGGATT
ACTCCGACCTGGCCTCCATCCTCATGGACGGCTTCAATGCTCATCAGATG
TGCTCGGCCGGACTAAACCCTGGTCTCCTCGAGGCGGGCTCCTCCCCATC
CGTGAGCGTGGCGTCATCGCTCGTGAACAAGCCCACCGCGGTGGATTACT
CCGACCTGGCCTCCATCCTCATGGACGGCTTCAATGCTCATCAGGATGCA
GTAGGGGCGGGAAGCGAGTTTGTAACGCTGGGAGGGGACCCTTACAGCGA
CTACTCCCTCTCGGGCACTCCTTACATCATGCAGTACGGTGCCCGCGCGG
GACCCCCTTCGGAGCACCTGCCGCTGCTGGTGGAAGATAAGGCCGGGTTT
GGCGACTTCTGCGGCGACATTTCGAGCATTTCGTCGGACTTAACCGAAGC
GCTAGCGGCTGGCGTGTTCGATGGGGATCCGTGTGACCCGTACTTCTAAG
ATGCAGTAGGGGCGGGAAGCGAGTTTGTAACGCTGGGAGGGGACCCTTAC
AGCGACTACTCCCTCTCGGGCACTCCTTACATCATGCAGTACGGTGCCCG
CGCGGGACCCCCTTCGGAGCACCTGCCGCTGCTGGTGGAAGATAAGGCCG
GGTTTGGCGACTTCTGCGGCGACATTTCGAGCATTTCGTCGGACTTAACC
GAAGCGCTAGCGGCTGGCGTGTTCGATGGGGATCCGTGTGACCCGTACTT
CTAA
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