prot_S-dermatodea_contig1357.2074.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1357.2074.1
Unique Nameprot_S-dermatodea_contig1357.2074.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length136
Homology
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.340e-45
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0
Query:   34 LAQSGYLDDPAFLRFLEYLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQFLHWQFGKKAPP 111
            LAQSGYLDD AF+RFLEYLQYFKRP YAKFITYPHSLAMLDLLI+NPPFRKEIAHVSFRDFVHQQQFLHWQFGK A P
Sbjct:   27 LAQSGYLDDRAFVRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGKTAAP 104          
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: A0A835Z5G5_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.640e-26
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0
Query:   34 LAQSGYLDDPAFLRFLEYLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQFLHWQFGKKAP 110
            LAQ  Y DDPAF+ FL+YL Y++RP YAK++ YPH LAMLD L+++  FR E+   SFRDFVHQQQF HWQ  ++ P
Sbjct:   45 LAQQRYFDDPAFMAFLQYLTYWRRPQYAKYLMYPHCLAMLDALLNSKRFRSELLMESFRDFVHQQQFFHWQHKRRDP 121          
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: A0A7S2XM67_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM67_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.830e-25
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 0
Query:   34 LAQSGYLDDPAFLRFLEYLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQFLHWQF 105
            LA SG L  P+F+ FL YLQY+KRP YAK+I+YPH    LDLLI N PFR+E+A+V FR+FVH+QQF  WQ+
Sbjct:   48 LATSGILQSPSFIAFLRYLQYWKRPEYAKYISYPHCFFFLDLLIHNEPFRREMANVGFRNFVHEQQFYSWQY 119          
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: A0A6U6IBL1_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IBL1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.960e-24
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 0
Query:   34 LAQSGYLDDPAFLRFLEYLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQFLHWQF------GKKAPPDE 113
            LA SG L D +FL FLEYL+Y+ RP YA+FITYPH L  LDLL  N  FR+E+A+V+FR+FVH+QQF  WQF      G+  P +E
Sbjct:   53 LATSGLLSDSSFLSFLEYLRYWSRPEYARFITYPHCLYFLDLLTTNETFRREMANVAFRNFVHEQQFYSWQFRSRKLYGRGVPEEE 138          
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: D7FV80_ECTSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV80_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 6.910e-24
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0
Query:   34 LAQSGYLDDPAFLRFLEYLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRK 84
            LAQ GYLDD AF+RFLEYLQYFKRP YAKFITYPHSLAMLDLLI+NPPFRK
Sbjct:   27 LAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK 77          
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: A0A7S3XZ41_HETAK (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ41_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 3.960e-23
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 0
Query:   34 LAQSGYLDDPAFLRFLEYLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQFLHWQ 104
            LAQ+ Y +DPAF+ FL YLQY++RP YAKFI YPH LA +++L D   FRKE+A   F++FVHQQQF HWQ
Sbjct:   66 LAQNKYFEDPAFINFLHYLQYWRRPEYAKFIIYPHCLAFMEMLEDEA-FRKELAKPGFKEFVHQQQFFHWQ 135          
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: A0A7S2EVA4_TRICV (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVA4_TRICV)

HSP 1 Score: 92.4 bits (228), Expect = 3.520e-21
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0
Query:   34 LAQSGYLDDPAFLRFLEYLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQFLHWQ 104
            LA SG L DP+FL FL YL+Y+  P YA+F+ YPH L  LDLL ++  FR+E+A+V+FR+FVH+QQF  WQ
Sbjct:   59 LATSGLLSDPSFLSFLRYLRYWSHPEYARFLVYPHCLYFLDLLCESEGFRREMANVAFRNFVHEQQFYGWQ 129          
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: A0A7S3QJ33_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ33_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.270e-20
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0
Query:   34 LAQSGYLDDPAFLRFLEYLQ-YFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQFLHWQF 105
            LA  GY  D AFL +L YL+ Y+ RP YAK+ITYPH L  LDL I+   FRKEI+ V FR+FVH+QQF++WQ+
Sbjct:   97 LATQGYFQDEAFLTYLRYLRSYWTRPEYAKYITYPHCLFFLDLAIEKEAFRKEISQVGFRNFVHEQQFMNWQY 169          
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: A0A485KER8_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KER8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.080e-20
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 0
Query:   33 DLAQSGYLDDPAFLRFLEYLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQFLHWQFGKK 108
            DLA + Y D+PAFL +L+YL  +K+P Y+++I YPH+L  LDLL D+  FR+ IAH +FRD VHQQQ LHW    K
Sbjct:   44 DLAINKYFDNPAFLNYLKYLXXWKKPEYSRYINYPHALTFLDLL-DDEKFRQMIAHDNFRDLVHQQQGLHWMHAAK 118          
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Match: A0A397S598_9GLOM (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397S598_9GLOM)

HSP 1 Score: 84.7 bits (208), Expect = 2.680e-18
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 0
Query:   33 DLAQSGYLDDPAFLRFLEYLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQFLHW 103
            +LAQ  Y +DPAF+ +LEYL+Y+KRP YAKFI YPHSL  LDLL  NP FR+ + +      +H +Q+ HW
Sbjct:   45 NLAQKEYFEDPAFINYLEYLKYWKRPEYAKFIIYPHSLYFLDLL-QNPQFREHLKNYEVATEIHSKQYYHW 114          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1357.2074.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L203_9PHAE1.340e-4592.31Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z5G5_9STRA2.640e-2659.74Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2XM67_9STRA8.830e-2562.50Mediator of RNA polymerase II transcription subuni... [more]
A0A6U6IBL1_9STRA1.960e-2456.98Mediator of RNA polymerase II transcription subuni... [more]
D7FV80_ECTSI6.910e-2490.20Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3XZ41_HETAK3.960e-2361.97Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2EVA4_TRICV3.520e-2157.75Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3QJ33_9STRA1.270e-2058.90Mediator of RNA polymerase II transcription subuni... [more]
A0A485KER8_9STRA3.080e-2055.26Mediator of RNA polymerase II transcription subuni... [more]
A0A397S598_9GLOM2.680e-1853.52Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 33..104
e-value: 6.2E-22
score: 77.4
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT SOH1coord: 34..127
IPR038089Mediator complex, subunit Med31 domain superfamilyGENE3D1.10.10.1340coord: 28..99
e-value: 6.8E-16
score: 59.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1357contigS-dermatodea_contig1357:17699..19912 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1357.2074.1mRNA_S-dermatodea_contig1357.2074.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1357 17240..20917 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1357.2074.1 ID=prot_S-dermatodea_contig1357.2074.1|Name=mRNA_S-dermatodea_contig1357.2074.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
MCCRIWKHVCSGRRLIPFPHLSRPLVVACGCTDLAQSGYLDDPAFLRFLE
YLQYFKRPHYAKFITYPHSLAMLDLLIDNPPFRKEIAHVSFRDFVHQQQF
LHWQFGKKAPPDEDEQQQSQQAPAPAQAGAASSET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008831Mediator_Med31
IPR038089Med31_sf