mRNA_S-dermatodea_contig13284.1948.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13284.1948.1
Unique NamemRNA_S-dermatodea_contig13284.1948.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13284.1948.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.960e-25
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 YAREGTNVTLQGVSLVDNVVARGSVVFVVASTVMTYQVIFNDSLTDENEDMLVVQADSESTYIAEDTTFDGFEGETIIFSEGTLYLDGCDFS 276
            YAR+   V L+GV L DNVVARGSVVF+V+S + TYQ +F D  T+ + D+  VQAD +S+Y AEDT+F GF GE ++FSEG LYLD CDFS
Sbjct:  586 YARDNAEVVLRGVELYDNVVARGSVVFIVSSNLTTYQTVFTD--TEGSSDLSAVQADEDSSYKAEDTSFVGFAGEAVVFSEGILYLDDCDFS 675
[Close]
BLAST of mRNA_S-dermatodea_contig13284.1948.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 6.470e-24
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 YAREGTNVTLQGVSLVDNVVARGSVVFVVASTVMTYQVIFNDSLTDENEDMLVVQADSESTYIAEDTTFDGFEGETIIFSEGTLYLDGCDFS 276
            YAR+   V L+GV L DNVVARGSVVFVV+S + TYQ +F D  T  + D+  VQAD +S+Y AEDT+F GF G  ++FSEGTLYLD C+FS
Sbjct:  236 YARDNAEVVLRGVELCDNVVARGSVVFVVSSNLTTYQTVFTD--TAGSPDLSAVQADEDSSYKAEDTSFVGFAGRAVVFSEGTLYLDECNFS 325
[Close]
BLAST of mRNA_S-dermatodea_contig13284.1948.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.090e-23
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 YAREGTNVTLQGVSLVDNVVARGSVVFVVASTVMTYQVIFNDSLTDENEDMLVVQADSESTYIAEDTTFDGFEGETIIFSEGTLYLDGCDFS 276
            YAR+   V L+G  L DNVVARGSVVFVV+S + TYQ +F D  T  + D+  VQAD +S+Y AEDT+F GF GE ++F EG LYLD CDFS
Sbjct:  674 YARDNAEVVLRGAELNDNVVARGSVVFVVSSNLTTYQTVFTD--TGGSADLSAVQADEDSSYKAEDTSFVGFAGEAVVFCEGILYLDDCDFS 763
[Close]
BLAST of mRNA_S-dermatodea_contig13284.1948.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.190e-23
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    1 YAREGTNVTLQGVSLVDNVVARGSVVFVVASTVMTYQVIFNDSLTDENEDMLVVQADSESTYIAEDTTFDGFEGETIIFSEGTLYLDGCDFS 276
            YAR+   VTL GV + DN V RGS +FVV S ++TYQV+ ND  T EN D+  VQ D  STY AEDT+F GF GE +++SEG LYLD CDFS
Sbjct:  496 YARDNAVVTLSGVEVSDNFVTRGSAIFVVNSELITYQVVVND--TSENPDLSAVQTDRLSTYTAEDTSFVGFAGEVVVYSEGGLYLDECDFS 585
[Close]
BLAST of mRNA_S-dermatodea_contig13284.1948.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.400e-21
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 YAREGTNVTLQGVSLVDNVVARGSVVFVVASTVMTYQVIFNDSLTDENEDMLVVQADSESTYIAEDTTFDGFEGETIIFSEGTLYLDGCDFS 276
            YAR+   V L+GV + DN V RGS +F+V ST +T QV+ ND  T EN D+  VQ D+ STY A+DT F GF GE +++SEG LYLD CDFS
Sbjct:  460 YARDNAVVALRGVEVSDNFVTRGSAIFLVNSTFITSQVVVND--TSENSDLSAVQTDALSTYTAQDTCFVGFAGEVVVYSEGELYLDECDFS 549
[Close]
BLAST of mRNA_S-dermatodea_contig13284.1948.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.340e-21
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 YAREGTNVTLQGVSLVDNVVARGSVVFVVASTVMTYQVIFNDSLTDENEDMLVVQADSESTYIAEDTTFDGFEGETIIFSEGTLYLDGCDFS 276
            YAR+   V L GV + DN V RGS +FVV S ++T QV+ +D  T EN D+  VQ D  STYIAEDT+F GF GE +++ EG LYLD CDFS
Sbjct:  681 YARDYAVVALSGVEVADNFVTRGSAIFVVNSALITSQVVVSD--TSENPDLSAVQTDRLSTYIAEDTSFVGFAGEVVVYGEGELYLDECDFS 770
[Close]
BLAST of mRNA_S-dermatodea_contig13284.1948.1 vs. uniprot
Match: D7G120_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G120_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.500e-20
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 YAREGTNVTLQGVSLVDNVVARGSVVFVVASTVMTYQVIFNDSLTDENEDMLVVQADSESTYIAEDTTFDGFEGETIIFSEGTLYLDGCDF 273
            YAR+   V L GV + DN V RGS +FVV S ++TYQV+ ND  T EN D+  VQ D  STY AEDT+F GF GE +++SEG LYLD C +
Sbjct:  472 YARDNAVVALSGVEVSDNFVTRGSAIFVVNSELITYQVVVND--TSENPDLSAVQTDRLSTYTAEDTSFVGFAGEVVVYSEGGLYLDECGY 560
[Close]
BLAST of mRNA_S-dermatodea_contig13284.1948.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 8.960e-9
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:  115 IFNDSLTDENEDMLVVQADSESTYIAEDTTFDGFEGETIIFSEGTLYLDGCDFS 276
            +F D  T  + D+  VQAD +S+Y AE+T+F GF G+ ++FSEGTLYLD C+FS
Sbjct:    8 VFTD--TGGSSDLSAVQADEDSSYKAEETSFVGFAGDAVVFSEGTLYLDDCNFS 59
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13284.1948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G0B0_ECTSI3.960e-2559.78Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G0A8_ECTSI6.470e-2459.78Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JRA9_9PHAE3.090e-2358.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY9_ECTSI4.190e-2358.70Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G119_ECTSI2.400e-2155.43Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5K4A5_9PHAE8.340e-2155.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G120_ECTSI1.500e-2054.95Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G5M2_ECTSI8.960e-953.70Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13284contigS-dermatodea_contig13284:4508..5734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13284.1948.1prot_S-dermatodea_contig13284.1948.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13284 4508..5732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.9466672-CDS-S-dermatodea_contig13284:4507..46181622924280.9466672-CDS-S-dermatodea_contig13284:4507..4618Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13284 4508..4618 +
1694079147.7950587-CDS-S-dermatodea_contig13284:4507..46181694079147.7950587-CDS-S-dermatodea_contig13284:4507..4618Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13284 4508..4618 +
1622924280.9591668-CDS-S-dermatodea_contig13284:4995..51091622924280.9591668-CDS-S-dermatodea_contig13284:4995..5109Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13284 4996..5109 +
1694079147.80652-CDS-S-dermatodea_contig13284:4995..51091694079147.80652-CDS-S-dermatodea_contig13284:4995..5109Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13284 4996..5109 +
1622924280.9675274-CDS-S-dermatodea_contig13284:5681..57321622924280.9675274-CDS-S-dermatodea_contig13284:5681..5732Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13284 5682..5732 +
1694079147.8160129-CDS-S-dermatodea_contig13284:5681..57321694079147.8160129-CDS-S-dermatodea_contig13284:5681..5732Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13284 5682..5732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13284.1948.1

>prot_S-dermatodea_contig13284.1948.1 ID=prot_S-dermatodea_contig13284.1948.1|Name=mRNA_S-dermatodea_contig13284.1948.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
YAREGTNVTLQGVSLVDNVVARGSVVFVVASTVMTYQVIFNDSLTDENED
MLVVQADSESTYIAEDTTFDGFEGETIIFSEGTLYLDGCDFS
back to top

mRNA from alignment at S-dermatodea_contig13284:4508..5734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13284.1948.1 ID=mRNA_S-dermatodea_contig13284.1948.1|Name=mRNA_S-dermatodea_contig13284.1948.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1227bp|location=Sequence derived from alignment at S-dermatodea_contig13284:4508..5734+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGCGCGAGAGGGCACAAATGTAACCCTCCAGGGAGTATCCCTGGTCGA
CAACGTGGTGGCTCGAGGCAGTGTCGTCTTTGTGGTGGCGAGCACGGTGA
TGACGTACCAGGTGCGCTGGGGAGACAAAAGCATTATTTGACAGAAACAC
GAAAAATTGTGTTTTTATTTTTGTGTTTTTCATACAGCAGCTGGTGTTTG
CTGTTGTTCCTGCTGTTTGCGAATTGAGTTCGCTCTCTCAAAATCCCGGC
CGTGGTCGCAGTTTTGCTGGTGTATACAGTGGTGTTGGTTACGTAATGGT
GATATGATGGATGGTGTTGGTTACGTAATGGTGATGTGGTGGCAATGTCT
ACGATGAGGATGATGATGGTGATGGTCGTCGGGATGATGATGATGGCGAT
GATGATTGTGGTCACGATGGTGATGACGATAGAGATGGCCATGGTTGTGG
TGGCGATGAAGTTACGAGATCTCGTCGTCAAAGCACAGGTGATCTTCAAC
GACAGCTTAACCGACGAAAACGAAGACATGCTGGTGGTGCAAGCTGACTC
GGAGTCGACCTACATCGCCGAGGACACGACGTTCGACGGCTTCGAGGGCG
AGGTGGGTTAGGTTCCATCTAGTTGCTCGCTTTGTGCTGTTGGTTCCTTG
TCCGTTTTTCGTTTTCGTTTTTCTTTTCGGTTGTTTTGTTTTCGTCGTGT
TTTTCTTTTTAACATCGACTGAAACCACACCCCAGCAATCTTATGCTGTA
CCCAAAATATCACGCAATCGTCTGCGATATCCTCCTAACGAGTGGAATGA
TTGATCGGTTTTCGCGCATATAGCCGACTAGCCTCCGGTACCATTTTTGA
CAGTAAGCAGCAACACATGATACCATACAATGCCTTCTGCGACGCCCCGT
TCTTTGGATCTATCGCACCCCCTGCTCTTTGCTCCCCTCAGGTATGCGTT
TTGGATTGTATGTTAGTGACATAGCCTGGAACCGCATCCCAGCCATCATA
TGTGGCAACAGGGGATATCATGCGGTCTATCCCAGCCATGTACGGTTCGT
ATGATCCAGTACATTGTCTCATGGAACATACCCTACGATGCCGCGTTTGA
TTTATCGATATCACCAAATTGTTATCGCTCACATTGACCGTCGCCCGGCG
CTTGTTACGTCCGCCCACGCAAAGACGATTATTTTCAGCGAGGGGACTCT
CTACCTGGACGGCTGTGACTTCAGCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13284:4508..5734+

>mRNA_S-dermatodea_contig13284.1948.1 ID=mRNA_S-dermatodea_contig13284.1948.1|Name=mRNA_S-dermatodea_contig13284.1948.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig13284:4508..5734+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGCGCGAGAGGGCACAAATGTAACCCTCCAGGGAGTATCCCTGGTCGA
CAACGTGGTGGCTCGAGGCAGTGTCGTCTTTGTGGTGGCGAGCACGGTGA
TGACGTACCAGTACGCGCGAGAGGGCACAAATGTAACCCTCCAGGGAGTA
TCCCTGGTCGACAACGTGGTGGCTCGAGGCAGTGTCGTCTTTGTGGTGGC
GAGCACGGTGATGACGTACCAGGTGATCTTCAACGACAGCTTAACCGACG
AAAACGAAGACATGCTGGTGGTGCAAGCTGACTCGGAGTCGACCTACATC
GCCGAGGACACGACGTTCGACGGCTTCGAGGGCGAGGTGATCTTCAACGA
CAGCTTAACCGACGAAAACGAAGACATGCTGGTGGTGCAAGCTGACTCGG
AGTCGACCTACATCGCCGAGGACACGACGTTCGACGGCTTCGAGGGCGAG
ACGATTATTTTCAGCGAGGGGACTCTCTACCTGGACGGCTGTGACTTCAG
CACGATTATTTTCAGCGAGGGGACTCTCTACCTGGACGGCTGTGACTTCA
GC
back to top