mRNA_S-dermatodea_contig13283.1947.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13283.1947.1
Unique NamemRNA_S-dermatodea_contig13283.1947.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13283.1947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13283contigS-dermatodea_contig13283:2786..3314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.9067366-CDS-S-dermatodea_contig13283:2785..30881622924280.9067366-CDS-S-dermatodea_contig13283:2785..3088Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13283 2786..3088 +
1694079147.7740335-CDS-S-dermatodea_contig13283:2785..30881694079147.7740335-CDS-S-dermatodea_contig13283:2785..3088Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13283 2786..3088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.917397-UTR-S-dermatodea_contig13283:3088..33141622924280.917397-UTR-S-dermatodea_contig13283:3088..3314Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13283 3089..3314 +
1694079147.7827523-UTR-S-dermatodea_contig13283:3088..33141694079147.7827523-UTR-S-dermatodea_contig13283:3088..3314Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13283 3089..3314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13283.1947.1prot_S-dermatodea_contig13283.1947.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13283 2786..3088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13283.1947.1

>prot_S-dermatodea_contig13283.1947.1 ID=prot_S-dermatodea_contig13283.1947.1|Name=mRNA_S-dermatodea_contig13283.1947.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
DGLGYPPVRFESELIIVGRRLRCLSAARREISPSKTQNNNGGLRLAFSVG
VGFVLPPFIHIIVQQQHGFSSDGDWYIHSIYVHMLGGTLGVRDVRTRRKT
*
back to top

mRNA from alignment at S-dermatodea_contig13283:2786..3314+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13283.1947.1 ID=mRNA_S-dermatodea_contig13283.1947.1|Name=mRNA_S-dermatodea_contig13283.1947.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=529bp|location=Sequence derived from alignment at S-dermatodea_contig13283:2786..3314+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGGCCTGGGGTACCCGCCCGTGCGGTTCGAGAGCGAGCTAATTATTGT
GGGTCGGCGGCTGCGTTGTCTGTCGGCGGCACGGAGAGAGATTTCTCCAA
GCAAAACCCAAAATAATAATGGTGGGTTGCGGCTAGCCTTTAGCGTGGGT
GTTGGATTTGTTTTACCACCATTCATTCATATAATAGTACAACAGCAGCA
TGGATTTTCGTCGGACGGTGATTGGTATATACATAGTATCTATGTACATA
TGTTGGGTGGAACATTGGGGGTGCGCGACGTGCGCACACGCAGGAAAACT
TAGAGTAAAGTCAACTTTGTCTCGAGTCCCTGCTTGCCGTGTCCGTGTTA
CTATGATTCACGCGAAATCGGGGGCTGGCTCCTTCCTTCTCTTTGGATCG
GTGTCAAACTGCTGAGGATTACAAGCACCATAGTTTCCTGCCGTTTCCCA
TCAGGGCGCCCGCACGTCACCACCGCCCCCGCTGTATCGTTCTGTTATGG
GGAGGGGTAAAAAACCAAGATGCTTTCAT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13283:2786..3314+

>mRNA_S-dermatodea_contig13283.1947.1 ID=mRNA_S-dermatodea_contig13283.1947.1|Name=mRNA_S-dermatodea_contig13283.1947.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig13283:2786..3314+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGGCCTGGGGTACCCGCCCGTGCGGTTCGAGAGCGAGCTAATTATTGT
GGGTCGGCGGCTGCGTTGTCTGTCGGCGGCACGGAGAGAGATTTCTCCAA
GCAAAACCCAAAATAATAATGGTGGGTTGCGGCTAGCCTTTAGCGTGGGT
GTTGGATTTGTTTTACCACCATTCATTCATATAATAGTACAACAGCAGCA
TGGATTTTCGTCGGACGGTGATTGGTATATACATAGTATCTATGTACATA
TGTTGGGTGGAACATTGGGGGTGCGCGACGTGCGCACACGCAGGAAAACT
TAGGATGGCCTGGGGTACCCGCCCGTGCGGTTCGAGAGCGAGCTAATTAT
TGTGGGTCGGCGGCTGCGTTGTCTGTCGGCGGCACGGAGAGAGATTTCTC
CAAGCAAAACCCAAAATAATAATGGTGGGTTGCGGCTAGCCTTTAGCGTG
GGTGTTGGATTTGTTTTACCACCATTCATTCATATAATAGTACAACAGCA
GCATGGATTTTCGTCGGACGGTGATTGGTATATACATAGTATCTATGTAC
ATATGTTGGGTGGAACATTGGGGGTGCGCGACGTGCGCACACGCAGGAAA
ACTTAG
back to top