mRNA_S-dermatodea_contig13282.1946.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13282.1946.1
Unique NamemRNA_S-dermatodea_contig13282.1946.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13282.1946.1 vs. uniprot
Match: D7G2P0_ECTSI (SnoaL-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.950e-10
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:  118 PRYLNVTNIFRKAGGRWLMXXXXXXXXXXXQSNKELRTTMGLGGLHLGEGADGVPRIINLGDQS---FNVDNGKMDGKLDEMIESL 366
            PR LNVTNI+RKAGG+WLM           +S    R  MG+ GL   +G +G+PRIINL +Q            D +L+EM+E+L
Sbjct:  235 PRVLNVTNIYRKAGGKWLMVHHHASLPPTGKSGSSRRVAMGIDGLK--DGLEGMPRIINLSEQGGGFXXXXXXXKDNRLEEMLEAL 318
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BLAST of mRNA_S-dermatodea_contig13282.1946.1 vs. uniprot
Match: A0A6H5L954_9PHAE (UVR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L954_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 8.700e-7
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  118 PRYLNVTNIFRKAGGRWLMXXXXXXXXXXXQSNKELRTTMGLGGLH-LGEGA----DGVPRIINLGDQ 306
            PR LNVTNI+RKAGG+WLM           +S    R  MG+ GL  +  GA    +G+PRIINL DQ
Sbjct:  405 PRVLNVTNIYRKAGGKWLMVHHHASLPPMGKSGSSRRVAMGIDGLKDVRAGAVVALEGMPRIINLSDQ 472
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13282.1946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2P0_ECTSI4.950e-1043.02SnoaL-like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5L954_9PHAE8.700e-748.53UVR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13282contigS-dermatodea_contig13282:388..6655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13282.1946.1prot_S-dermatodea_contig13282.1946.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13282 388..6655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.85821-CDS-S-dermatodea_contig13282:387..5511622924280.85821-CDS-S-dermatodea_contig13282:387..551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13282 388..551 +
1694079147.7499633-CDS-S-dermatodea_contig13282:387..5511694079147.7499633-CDS-S-dermatodea_contig13282:387..551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13282 388..551 +
1622924280.8697274-CDS-S-dermatodea_contig13282:5122..52221622924280.8697274-CDS-S-dermatodea_contig13282:5122..5222Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13282 5123..5222 +
1694079147.7576873-CDS-S-dermatodea_contig13282:5122..52221694079147.7576873-CDS-S-dermatodea_contig13282:5122..5222Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13282 5123..5222 +
1622924280.8790877-CDS-S-dermatodea_contig13282:6511..66551622924280.8790877-CDS-S-dermatodea_contig13282:6511..6655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13282 6512..6655 +
1694079147.76547-CDS-S-dermatodea_contig13282:6511..66551694079147.76547-CDS-S-dermatodea_contig13282:6511..6655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13282 6512..6655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13282.1946.1

>prot_S-dermatodea_contig13282.1946.1 ID=prot_S-dermatodea_contig13282.1946.1|Name=mRNA_S-dermatodea_contig13282.1946.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
AAAAEEALPAQLSSGGGGGGGGGGGGGGGSVGTTKKKKKPRYLNVTNIFR
KAGGRWLMVHHHASLPPPPQSNKELRTTMGLGGLHLGEGADGVPRIINLG
DQSFNVDNGKMDGKLDEMIESLRSQLPGGGSFNLGG
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mRNA from alignment at S-dermatodea_contig13282:388..6655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13282.1946.1 ID=mRNA_S-dermatodea_contig13282.1946.1|Name=mRNA_S-dermatodea_contig13282.1946.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6268bp|location=Sequence derived from alignment at S-dermatodea_contig13282:388..6655+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCCGCCGCGGAAGAGGCGCTTCCGGCGCAGCTCAGCAGCGGGGGCGG
CGGCGGCGGCGGGGGGGGGGGCGGTGGGGGCGGCGGTAGCGTGGGCACGA
CAAAGAAGAAGAAGAAGCCGCGCTACCTTAACGTCACCAACATCTTCCGG
AAGGCCGGGGGAAGGTACTGTAATTGTACTTGTATTGTAATTGTATTGTA
ATTGTGTTGTAATTGTGTTGTAGTTGTGTTGTATTTGTGTTGTAATTGTA
TTGTAATTGTATTGTAATTTAAGGCAGGTGCGCCGCGGGTAACGACGGCG
CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTGTGTGTGT
TTCTGTGTGTGTGTCTCTGTGTCTCTTTGTCTCTGTGTCTCTGTGTGTGT
TCGTGTGTGTGTTTCGGCGTTGATGCGGGGGTCTGCCTCCGAAAGAGTGG
GCACAGCTCGGTTCCGACGACGTCTTGCTGCTCTGATGTCGTTATTTTCT
TCTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTTGTTTATACTGTTGTTGAGTATTCTTTAGGGCTAGCACT
GGAATAGCTATTAATAGCTCTACAGGTAAGAGACACAGAGATACTATATA
TATACATCTTTTTTTGTCAATACCGTCCCTTTATTCTTTTGCGCGCATCT
GCCCAAACAAGACACGGGTCGGAACTTTAGCCGATCAGCGATAGGTGGAA
AAATCAATAAATCAATTTATTTTTCAACCAACAAAAAATTATATCGGCGA
TGGTGTGTTTGTGCGTAGGGAGAGGGAGAGAGGTGAAGCTATCATGTCTT
GTAGAGCCGATGAAATTTCGCCGCTGCAGTGCTGCCACTTGGGGTATCAT
ACGCACGTTTTGCGAGACGGGGGCGTCGACCCTCTTGGAACCGAGCCTAT
ACTTGTAGCATATATTAATAGTATGATACTGTAGTGTTTATTTAATGCAT
AGTATAGTATAATATTACGAAGGAACATAGTTAACAGGTCCAAACATCAC
GGCGAACACTACCCAACTACTCCTATTAATACTAATATTAATACCAGGAA
TACCCAAACAACACCAAGAATATCATGAAATACAAAAACCACGAGATTTA
GGCCATATTCATAAACGTCGACCTTGAAATCTCGATCATTCCGGTCTATT
TTGATATTTCTAGGTTGAGACTTGTGGCACTTTTGGACCTGTTAAAGTTA
ACTATGGTATAGTCCCCCGTACTAGGATATAGTACAAGAAACCCTCGGAC
GTAGTCCTTTATCGTTAGCAGGCTGCCTGAAGCCTACGCGGGGTGACGCA
AGTGGGGTGGAATTGAGTCGATCGGTTGTCATCGAGTAGCCGAGGACGTT
CACGCACACACCAAAGCAAAGCCGGGTTGCGTTGCGGGTACAATCAATCA
GATACTGTATCATGTGATAACGTTTTGACCGCGACCGACCGACCGACCGC
GTCCTCTATTATGGTGTACTGGTATGTACATTGCTACATTGTATGATAAC
AGTTGGAGGGACGATTTTTCACCCTGCTGCGGCGGCCTGCTTTCAGCATG
TAAAAAAAACGACCTTCATGCGTCGAGAGAAGATCCAATTAATTTATTGT
TGTTCACATCATTTACAAGTCTCCTTGAGCTGAACATCGATACTGACTTG
ACATGGAACACACAGAGTAATAAGCTGCGCTACGTATAATAGGAGAGACT
CAATTTAGCGCATATATTCTCGGCATCAGTCTTAGCAGAAGCGGTGCCCG
TATGGATCCCCATGGGGTACTCTAACTAGCTACAGTAAGACAGACCTTTG
TAGTTGTGGTTTGAGAAAAAACTGCAGCTGCCTGCGAGAGAGAGCTATTA
ACCCTTTTGGTACTACTGTTTGGAGCGCCTGTTAGCACGTAATGAGGCGT
TCTTGAAGCGGGGCCCTGGGAAACTCCATGGGTTATGACGCAGGAATGAG
AAAGAGAGAACGGAGCGCAAGGGAAACGGGGGCTGTGTCTGTCGACTGGC
ATCGAGAGAGTTTTTTTTTGTCGTTTTGGAGAGCCCTATTAAGTTCAGTA
TTCATACTTATTTAATGTTATAGTACCAAAAGGGTTAGTAGATATTTTGT
ACCTGGTAGTTTACATGCAGTCTTCAATGATGATATAACGCTCTTCCTGA
AAGTAGATACTGACACGGAGCACACTGGAAGCAAGAGTGCGCTATGTACT
ACAGTACTGTATTATGCCTATAATATTTATAGGAGAGATGCATTCAGTGC
GTTTTGTTTCGTCTCGCCAGTCGCGGTGGAAGTCGAGCTATGATACGCAG
TTTACAGCAGTAGTAGCAAGCAGGCAGTGAAAAACCTCGCATGCTACTGT
ACTAATAGTGCGGGATGAAAAACTCAAATGAAAAAAATCTCAAAGATTCA
GCGAAATAAAAACAAATGCGCTCGGTCCGCGCGCGCGCGCGCGCGCGGGG
ATTCATTCACGCGAGAATAATATAATACTACTGCGAATTACGTAGCCTCG
ACCACAGGACACATCACACCTCCACTCGACAATGCAGGTATATAGCGGAA
ACCATTCTTAGACGGCAGCGTGTCTAGACGTGTACTTGAAGGGCGTCCCC
ACGCGATATAATAGTGCCTCGTCGAGTCTTGGGGCCTCGATGCTGAATCC
CAAAAGGTTTGCTTCAACTCTCTCGAAGCTACTGCTGTACCACTACTGTA
CAGCAGCAGTATTGTTTTGCGTGTGCGGTAGTATATCGTACCATCAACAA
CAGCTGTATAGCATTGAGCATTCCTTCTGTCGGTGGCGCATTAGAGGCCC
GCCCGACAGTAGCGCTATTTGTAGCAGTAGCGGTACCCGCGTCGATCCGG
AGGGCGCTGCTCTCCTCAGCGGCTTCGCACCTACCTCCCGAAACCTAGTC
ACAACGCTTTCTATCGAAGGCAACAAAAATAAGAAGGAAAAGCACCACGT
GCGCTGAACGCACCACGACCACACAAATATATACAGCAAGCAAAGCACAG
CGCGGGGCAAGAGGAAGATTCCTAAGCTCAGAAAAGCCTCCTAAAGAAGT
TGTAAGTCCTTTATATAGTATACACTGTAGCCTATAGTATATAGTATATA
CATTTTTGCGGCGACTGTGGCGACTAGTATACGGGTGCTGCAATGCGGTG
ATTAGATACACGCACAAGCACACCAGCACCGTGCATGCCATGCGAGCTAT
GATACTACTGCGAACGTGGCACGAGGCCGGCCGCTTCTCTACCGCCACGA
CAAGGTCGAAGAGTAGCCGTGGTTGTTGAGTAGCTGTTCGCCGCGAAACA
AGGTGCCGGCAGGTAGGTGGCCCCCTAAAACGCATAGTATATACTATAGA
GTCAGTCCCAAGAGTGTTGAGCTTAACGTTTACGGACTCAACTCTTCCAA
CGCTACAGTAGCATCTCTGTGCCCCCCCCCCCCCCTCCGTGGGTGCTTGC
TGTGTTTGTGCGACTACTCCCGAGGGAATGCAACTTTTATTTTTTTGGCA
CACGTATGATAGACTTGCTTTTCCGAGGTCCATCTGTGGTCACAAGGAAT
CATCCCATCTCTCCCCGGTTCTTACCTTTGCTTTTGATCGCGAATGCATT
GGGTTCGGCACTCCCGCAGCTCGCCGATTTCTCGGATTTTGCTTACTCAC
GCTTTCAGCGGCGGAGGTAGATAAAATAAATGAGTATCGACTCTGCCGGG
ATTCGAACCCCGGTCCTCCGCTTACTGGGCTGTTGGTCACCAGTTCAACC
ACGGGGCACGCGGTATGCATGTACAGGGGAAAACCGCAGCCACCGCAGTG
TTCGTCTGGACATTGCTTCCACGTGACGGGTAGAGATCTGTTCGTTGGTG
CATGCATGATGTTTGTTTTGCGGCGGTAAGCGTAGAAGAAAAGAGTACAC
ACTGTTAGCACCGCGTTTGTCTGATGGGTGCGACATAGGGAAGTAGCGTC
GAAGAAAACGAGACCTCGCACAAGGGGCGCCCGGCGGTTATTGTCGTAGC
GAGGGGGGTGGATTATCAAGGCGTTATGCTTGTAAGTCTTGAGAAAACCG
GTGCCACCACGCCCCATCCATTGGGTGCCACCGCTGTTTTTTTTTCACAT
GCTGCGCTCTTTTCGCATACTGTACGAGTAGGTGTTACTTTTGTAGATCG
CTGCAGATTTGTAGAGCTGTTTTTGCCACACCGTGGTGTAGCGCATGTAC
GCTCTCCTGCGGGATGTGGTATAATGTAGCACGAAGAGACGAACTCGTTC
CTCTTTTTTTTCTTTGTCCGTTCCAGATTCGGAAAACACCGCGGTTGCCA
ATTGTGACCGGCGGCGAGCTGCGAGATCGTCGCCGCGAACAAGGAATTCA
TACTATTATACTGTATGATACCGCTGCTGCGGTATGGTATGGCAGGCGGC
TTTCACCCTATAGAAGCACAACAAGCTTTTCCCAGGCCGCTTCCTGGTGC
CCCGATGCGCACTCACCACGCCGGACTACCGTCCGTGTGTTCCGCTCCGT
GTGCGGGGCGGGTGGCACCAGCCACATCGCTTGGTGCTCGTGCACACCCT
GCTCCGAACGGCTTACCGTTGACTTGTACCAGCACACAAGAGGTGCCTGA
AACCTTTTTCGATGTACCGCGTTGTTCGATTTTGTCTCACTCCTCCCTCC
TTATCCCCCCGATCGATCGCTGGTGGTGTTGGCAGGTGGCTGATGGTGCA
CCACCACGCGAGCCTGCCGCCGCCACCCCAGTCGAACAAGGAACTGCGGA
CGACTATGGGCCTCGGCGGCTTGCACCTGGGAGAGGTGAGGCCTCGAATG
CCCGGGGCCGCGCCTTGTCGCTGACGCCCGGTTGCCTTGGCCGTTGGAGG
CTGGAGCGCTTCGCGTTGCCGGCCCTCTTTTTTGCTTGTAATTTTTTTTT
TCTTCTCTCTGCTCGGGTTTCGCTCGCCTGAAAGGCGTTATTATTTTTGT
ACCACTAAGATACTGTACTGCTGTAGTAGGTAGCCACGGCTACGCCCGGG
AGGTGTGCGTTGGCAGGTCGAGCGAATCGAGGCGGAAGGCGAGCGTGGTC
TCTCAACTATTAAAATCAAGTTTGTTTGGCGCTCAACACAAAGATCAAGT
CGTGCCCTAAACCCATGCCCCATAAAGTAGCTTGGGTGGCTTAGCCCGAT
GTACGCACAAATGCGTGTGTTGAAAACATGACCTCGGACGTCTAGCGCTA
ACACGGGAAACTCTGACAGGCGTTTGATTTAAGGTGTGGCAGTGTTGTTG
GCGCCGACTCTCTGGCGTTGTAAGTTTAGTGCTTTGTCAGGTTAGGTGTT
GAGGGCGCAAGCAAGGGCGTTTCGGTCTGAACGGGTTTTTTGCCGTCAAA
GATAGACCGGTCGAGGATGTGGTAATGCATTATGGCGTGATACCACGAGC
GTCATATACATATATGTATATATATGTTTATATATGATGTATACATCGCT
CTATTAATACTACTTGTACATGTGTACATATAATATGTACATACCGCAAA
TGTTTTAAGCCTTTTGGTACTAGCCCGCTGTTTAGAGCGCCGGTTAGCAC
GTTATCAGGCGTGCTTGAAGCGGGGCCCTGGGGAACCGCATGGGGTATGA
CGCAGGAATTAGAGAGAACGGAGCCCAAGGGAAACGGGGCTGTAGCTGTC
GACTGGCATCGAGATTTTTTTTGGTCGTTTCGGAGAGCCCTATTAATACT
ACTAAAATAATGGTACTTACTTAATAGTGCCACTATAATCAAGTAATCAG
GACCAAATATCACGACCATAAATACGCAAGTGTCCCGACCATGAACACTC
AGACAAAGCCAAAAACCCACGACCAAAACATCAACACGAGGCCTATTAAT
AGTAATAGTAATAGCCTTCCCGACAAACACCGACCGTGAATATCATACAA
TACCCAATCGTTCCGGCCTATATTGTTTTTTTGCAAAGTTAACGTTTGTG
ACGAATTGGACCTGATAACTATGTTCCTCCGTAATAGTAAATAAATAATG
GATGTGCACTCTTTTTTTTTTTCTTTTTTTTTTCTTCCGTGCTTTTTTTC
TTCTTTTTTTTTGCTGTTTTCAAGGGGGCGGACGGTGTGCCTCGCATCAT
CAACCTCGGTGACCAGTCGTTCAACGTCGACAACGGCAAGATGGACGGCA
AGCTGGACGAGATGATCGAGTCGCTGCGCTCACAGCTTCCCGGAGGGGGC
TCGTTCAATCTCGGCGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13282:388..6655+

>mRNA_S-dermatodea_contig13282.1946.1 ID=mRNA_S-dermatodea_contig13282.1946.1|Name=mRNA_S-dermatodea_contig13282.1946.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig13282:388..6655+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCCGCCGCGGAAGAGGCGCTTCCGGCGCAGCTCAGCAGCGGGGGCGG
CGGCGGCGGCGGGGGGGGGGGCGGTGGGGGCGGCGGTAGCGTGGGCACGA
CAAAGAAGAAGAAGAAGCCGCGCTACCTTAACGTCACCAACATCTTCCGG
AAGGCCGGGGGAAGGCGGCCGCCGCGGAAGAGGCGCTTCCGGCGCAGCTC
AGCAGCGGGGGCGGCGGCGGCGGCGGGGGGGGGGGCGGTGGGGGCGGCGG
TAGCGTGGGCACGACAAAGAAGAAGAAGAAGCCGCGCTACCTTAACGTCA
CCAACATCTTCCGGAAGGCCGGGGGAAGGTGGCTGATGGTGCACCACCAC
GCGAGCCTGCCGCCGCCACCCCAGTCGAACAAGGAACTGCGGACGACTAT
GGGCCTCGGCGGCTTGCACCTGGGAGAGGTGGCTGATGGTGCACCACCAC
GCGAGCCTGCCGCCGCCACCCCAGTCGAACAAGGAACTGCGGACGACTAT
GGGCCTCGGCGGCTTGCACCTGGGAGAGGGGGCGGACGGTGTGCCTCGCA
TCATCAACCTCGGTGACCAGTCGTTCAACGTCGACAACGGCAAGATGGAC
GGCAAGCTGGACGAGATGATCGAGTCGCTGCGCTCACAGCTTCCCGGAGG
GGGCTCGTTCAATCTCGGCGGAGGGGCGGACGGTGTGCCTCGCATCATCA
ACCTCGGTGACCAGTCGTTCAACGTCGACAACGGCAAGATGGACGGCAAG
CTGGACGAGATGATCGAGTCGCTGCGCTCACAGCTTCCCGGAGGGGGCTC
GTTCAATCTCGGCGGA
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