mRNA_S-dermatodea_contig13268.1941.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13268.1941.1
Unique NamemRNA_S-dermatodea_contig13268.1941.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: D8LE71_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE71_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 3.870e-156
Identity = 253/359 (70.47%), Postives = 279/359 (77.72%), Query Frame = 1 
Query:    1 VTCWAFATFDGHAGPACAHFLKENFMVSFRGAMEHLRAAAAAKGT--VVANKNSVASTRGAAYL---------------AEGNASGDGKDGES--SQQKDPAMEVVLARLLTDTLASLTRKFEKAALSSGEISGACVIAGLYCEGALVLANIGDCQAVYHGQVKSAPGAAVTAQTTIHDASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIASEVF-GGENPLTPPFLVLATDGIWDETSATTVVDEVKDGIAKIQAHKRRFTMMEG----HRRDSSFGSTTFTDGESDSEEEETEFCGSGEWAEQGMDLAERVVALARGRYDDATALVVVFE 1005
            V CWAFATFDGHAGPACAHFLKENFM   R  ++    AA AK T      +    +  GA  L               + G+  GDG D      ++  P++EVVLARLLTDTLASLTR+FE+ AL  GEISGACVI+GLYCEGALVLAN+GDCQAVYHGQVKSAPG AVTAQTT+HD +NP EVNRFL AGG+IS SGRFQG+LEPSRTVGDVDVKA  PKGCIASFPELFKVDIAS+VF G E P  PPFLVLATDGIWDET+A  VVDEVKDGIAKIQAHKRRF +       H+R+ SFGSTTFTDGESDSE+E +EFCGSGEWAEQGMDLAERVV+LARGRYDDATALVVVFE
Sbjct:  141 VPCWAFATFDGHAGPACAHFLKENFMAHLRKTVDTRYNAANAKTTHSTTTRQAQGNADAGAGKLKXXXXXASEPPRKDGSVGHGGGDGNDNADVPPRKLSPSVEVVLARLLTDTLASLTREFEEEALEIGEISGACVISGLYCEGALVLANVGDCQAVYHGQVKSAPGDAVTAQTTVHDGTNPAEVNRFLMAGGYISASGRFQGVLEPSRTVGDVDVKADCPKGCIASFPELFKVDIASDVFQGDEKPSVPPFLVLATDGIWDETTANIVVDEVKDGIAKIQAHKRRFAIRTRSGGKHKRNLSFGSTTFTDGESDSEDEPSEFCGSGEWAEQGMDLAERVVSLARGRYDDATALVVVFE 499
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: A0A836CMW2_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.100e-19
Identity = 79/261 (30.27%), Postives = 115/261 (44.06%), Query Frame = 1 
Query:   16 FATFDGHAGPACAHFLKENFMVSFRGAMEHLRAAAAAKGTVVANKNSVASTRGAAYLAEGNASGDGKDGESSQQKDPAMEVVLARLLTDTLASLTRKFEKAALSSGEISGACVIAGLYCEGALVLANIGDCQAVYHGQVKSAPGAAVTAQTTI-HDASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIA-----SEVFGGENPLTP--PFLVLATDGIWDETSATTVVDEVKDGI 774
            FA FDGH G  C+ +L +N         E LR A                                   +S +Q+   +   L   L   L     K+   A    + SGACV+ GLYCEG + +AN+GDC AV +      PGA      ++ H +  P E  R   AGG +  +  F G+LEPSR++GD+D+K    +G + + P + +V I      +E    + P     PFL+ A+DG+WD  +A  VVD  K  +
Sbjct:    9 FAVFDGHGGSRCSQWLADNLE-------EDLRCA-----------------------------------DSWRQEGLTLPKRLKGALVQALKRAEYKYLDLAFKESDHSGACVVVGLYCEGHVCVANVGDCLAVLY-----LPGADSHVDLSVAHRSRQPEEARRIEAAGGLVINNRAF-GVLEPSRSIGDLDLKRHC-RGAVTADPYIREVVIPPPQQPAEGAAKKKPALQEAPFLLFASDGLWDVVAAPVVVDLTKKSL 220
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: A0A067C0L6_SAPPC (PPM-type phosphatase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0L6_SAPPC)

HSP 1 Score: 86.3 bits (212), Expect = 4.710e-15
Identity = 63/180 (35.00%), Postives = 92/180 (51.11%), Query Frame = 1 
Query:  241 DPAMEVVLARLLTDTLASLTRKFEKAALSSGEISGACVIAGLYCEGAL---VLANIGDCQ-AVYHGQVKSAPGAAVTAQTTIHDASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIASEVFGGENPLTPPFLVLATDGIWDETSATTVVDEVKD 768
            D   E+  A L T  +A+L  +F + A  + + SGAC +A L  +       + N+GDC+ A      ++ P   V A +T H AS P E  R L AGG +   GR  G+L PSR++GD+D+KA   +G + + PE+ +  IA               VLATDG+WD  S   V+D  +D
Sbjct:  120 DEQSEITKASLET-AVATLEARFNQIAADASDYSGACFVALLVLQDGSHRRFVMNLGDCRIAALEVSPQAHPKRQVHALSTDHKASCPLEKRRILVAGGSVV-GGRVAGVLAPSRSIGDIDMKAKGMEGWVVAVPEISEGKIARN----------SIYVLATDGVWDVLSNDEVLDIAED 287
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: A0A7S3XLZ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLZ6_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 7.590e-15
Identity = 72/250 (28.80%), Postives = 106/250 (42.40%), Query Frame = 1 
Query:   16 FATFDGHAGPACAHFLKENFMVSFRGAMEHLRAAAAAKGTVVANKNSVASTRGAAYLAEGNASGDGKDGESSQQKDPAMEVVLARLLTDTLASLTRKFEKAALSSGEISGACVIAGLYCEGALVLANIGDCQAVYHGQVKSAPGAAVTAQTTIHDASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIASEVFGGENPLTPPFLVLATDGIWDETSATTVVDEVK 765
            F+  DGH GP CA FL+ N     +    H            A K S                     GE+S      +  VL   +++ + S+   F K A S  + SGAC +  L     +  AN+GDC  V +          +   + +H  +   E+ R   AG  +   GR  G+L PSR+VGD+DV+   P G + + P +  +++  EV  G +   P FL+LA+DGIWD    T     VK
Sbjct:   21 FSVIDGHGGPGCADFLQSNLTDRIK---HHF-----------ATKCS--------------------QGETSL----GLGAVLTACVSEAICSVDADFTKYAESVNDYSGACFVVALCYSNTICFANVGDCLGVLYNST-----GKIKLPSQVHRCTIQKEIQRIAKAGAPLR-DGRLGGLLVPSRSVGDLDVRLAYP-GAVVAEPYVAVLEL--EVGQGSSHRRP-FLLLASDGIWDSMQTTAAAKHVK 222
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: D8LEW5_ECTSI (GJ12915 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.150e-14
Identity = 74/262 (28.24%), Postives = 109/262 (41.60%), Query Frame = 1 
Query:   16 FATFDGHAGPACAHFLKENFMVSFRGAMEHLRAAAAAKGTVVANKNSVASTRGAAYLAEGNASGDGKDGESSQQKDPAMEVVLARLLTDTLASLTRKFEKAALSSGEISGACVIAGLYCEGALVLANIGDCQAVYHGQVKSAPGAAVTAQTTIHDASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIASEVFGGENPLTPPFLVLATDGIWDETSATTVVDEVKDGIAKIQAHKRR 801
            F  FDGH GPACA FL ++                    TV+A+   +                        +   P      A    D+   L +   K A   G++SG+  I   + +G LV+A +GD   +Y   +              H  SN  EV R L+ GG I  + R  G L P+RT+GD+D K  A    ++  PE+    I +    GE P   PFLVLA+DG+WD  S   V    + G+  ++AH+++
Sbjct:   80 FGVFDGHGGPACAEFLTQSV------------------STVLAHSPVL----------------------YDEDLTPTQRRTFAT--ADSFEELEKVHNKWADEIGDLSGSTAILSTFQDGVLVMAGVGDSAGLYVDHMGKQHNLCPQ-----HSTSNEKEVERVLSMGGTIV-NNRVAGCLMPTRTIGDLDCKR-ALGAIVSPHPEITLAAIYAPPDDGE-PHDEPFLVLASDGLWDVLSFAEVAFITRKGLRNLRAHEKQ 291
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: A0A6H5KBY9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 9.340e-14
Identity = 73/262 (27.86%), Postives = 108/262 (41.22%), Query Frame = 1 
Query:   16 FATFDGHAGPACAHFLKENFMVSFRGAMEHLRAAAAAKGTVVANKNSVASTRGAAYLAEGNASGDGKDGESSQQKDPAMEVVLARLLTDTLASLTRKFEKAALSSGEISGACVIAGLYCEGALVLANIGDCQAVYHGQVKSAPGAAVTAQTTIHDASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIASEVFGGENPLTPPFLVLATDGIWDETSATTVVDEVKDGIAKIQAHKRR 801
            F  FDGH GPACA FL ++                    TV+A+   +                        +   P      A    D+   L +     A   G++SG+  I   + +G LV+A +GD   +Y   +              H  SN  EV R L+ GG I  + R  G L P+RT+GD+D K  A    ++  PE+    I +    GE P   PFLVLA+DG+WD  S   V    + G+  ++AH+++
Sbjct:  198 FGVFDGHGGPACAEFLTQSV------------------STVLAHSPVL----------------------YDEDLTPTQRRTFAT--ADSFEELEKVHNTWADEIGDLSGSTAILSTFQDGVLVMAGVGDSAGLYVDHMGKQHNLCPQ-----HSTSNEKEVERVLSMGGTIV-NNRVAGCLMPTRTIGDLDCKR-ALGAIVSPHPEITLAAIYAPPDDGE-PHDEPFLVLASDGLWDVLSFAEVASITRKGLRNLRAHEKQ 409
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: A0A1V9ZR45_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR45_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.250e-13
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 1 
Query:  286 LASLTRKFEKAALSSGEISGACVIAGLYCEGALV---LANIGDCQ-AVYHGQVKSAPGAAVTAQTTIHDASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIASEVFGGENPLTPPFLVLATDGIWDETSATTVVDEVKDGI 774
            +A+L   F K A ++ + SGAC +A +  E       + N+GDC+ +      +  P   + A +  H AS+P E  R L AGG +  SGR  G+L PSR++GD+D+K    +G + + PE+ +  + ++             VLATDG+WD  S   V+D  ++ +
Sbjct:  125 VATLETIFNKLASTARDYSGACFVALIVVEDGSARRFVVNVGDCRISALEVSARGHPKRTIHALSNDHKASDPNEKRRILVAGGSVV-SGRVAGVLAPSRSIGDIDMKVPGMEGWVIAEPEISEGTLCAD----------SIYVLATDGVWDVLSDDEVLDIAEETL 280
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: A0A8J1ZDZ1_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZDZ1_9DINO)

HSP 1 Score: 75.9 bits (185), Expect = 2.180e-11
Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 1 
Query:  295 LTRKFEKAALSSGEISGACVIAGLYCEGALVLANIGDCQAVY----HGQVKSAPGAAVTAQTTIHDASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIASEVFGGENPLTPP--FLVLATDGIWDETSATTVVDEVK 765
            + +   K   ++G  + +CV+ G Y    L  AN+GDC+AV+    +    +    A    +    AS P EV R  + G  +S  GR +G LEP+RT+GD DVKA  PKG I+  PE   VD+ +E    +   T     LV ATDGIWD  +   +++ +K
Sbjct:  145 IEKTLAKTGSTAGCCANSCVVWGKY----LWCANLGDCRAVWIPLNNADSATFDTGAFCWMSRDLKASAPYEVERIRSCGWRVS-DGRVEG-LEPTRTIGDFDVKAKVPKGVISIVPETRMVDMVAEARKKDKDATDVQGLLVQATDGIWDCVNGQDILNVIK 301
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: A0A8J2F726_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2F726_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 3.920e-11
Identity = 62/165 (37.58%), Postives = 85/165 (51.52%), Query Frame = 1 
Query:  304 KFEKAALSSGEISG----ACVIAGLYCEGALVLANIGDCQAVYHGQVKSAPGA-----AVTAQTTIHDASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIASEVFGGENPL--TPPFLVLATDGIWDETSATTVVDEVK 765
            + EK  L +G  +G    +CV+ G Y    L  AN+GDC+AVY   + S  G+     A    +    A+ P EV R  + G  +S  GR +G LEP+RT+GD DVKA  PKG I+  PE   +DI +E    E         LV  TDGIWD  S   +++ +K
Sbjct:  145 EIEKGLLKTGSTAGCCANSCVVWGRY----LWCANLGDCRAVYI-PLNSFDGSTFDTGAFCWMSRDLKATAPYEVERIRSCGWRVS-DGRVEG-LEPTRTIGDFDVKAKVPKGVISIVPETRMIDIIAEGRKKEKDARSVQGILVQGTDGIWDCVSGQDILNIIK 302
[Close]
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Match: A0A0G4H0Q8_VITBC (PPM-type phosphatase domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H0Q8_VITBC)

HSP 1 Score: 74.7 bits (182), Expect = 1.270e-10
Identity = 55/154 (35.71%), Postives = 73/154 (47.40%), Query Frame = 1 
Query:  340 SGACVIAGLYCEGALVLANIGDCQAV--------YHGQVKSAPGAAVTAQTTIHD---ASNPGEVNRFLTAGGFISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPEL--FKVDIASEVFGGENPLTPPFLVLATDGIWDETSATTVVDEV 762
            SGACV+  L     L  AN+GDC+A         Y        G  V     +     AS+  E+ R    GG +  +GR  GILEPSRT+GD DVK   P G I++ PE+   ++D            T   L++ATDG+W+  SA  V D V
Sbjct:  246 SGACVLCVLIVGDRLYCANLGDCRAAWVSLADSNYRNTAADNGGVGVFRSVYLSRDFRASDKDEIRRIQRLGGRVM-NGRVAGILEPSRTIGDFDVKNTQPAGAISTVPEIRVHQMD------------THGMLLIATDGVWESLSAADVCDRV 386
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13268.1941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE71_ECTSI3.870e-15670.47PPM-type phosphatase domain-containing protein n=2... [more]
A0A836CMW2_9STRA2.100e-1930.27Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A067C0L6_SAPPC4.710e-1535.00PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S3XLZ6_HETAK7.590e-1528.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LEW5_ECTSI3.150e-1428.24GJ12915 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KBY9_9PHAE9.340e-1427.86PPM-type phosphatase domain-containing protein n=1... [more]
A0A1V9ZR45_9STRA1.250e-1331.74PPM-type phosphatase domain-containing protein n=1... [more]
A0A8J1ZDZ1_9DINO2.180e-1134.97Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A8J2F726_9DINO3.920e-1137.58Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A0G4H0Q8_VITBC1.270e-1035.71PPM-type phosphatase domain-containing protein n=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13268contigS-dermatodea_contig13268:2189..6756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.5
Seed ortholog evalue1.4e-114
Seed eggNOG ortholog2880.D8LE71
KEGG koko:K01090,ko:K14803
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionProtein phosphatase 2C
Ec32 orthologEc-00_001150.1
Exons7
Model size1284
Cds size933
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.4392958-UTR-S-dermatodea_contig13268:2188..22631622924280.4392958-UTR-S-dermatodea_contig13268:2188..2263Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13268 2189..2263 +
1694079147.3659897-UTR-S-dermatodea_contig13268:2188..22631694079147.3659897-UTR-S-dermatodea_contig13268:2188..2263Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13268 2189..2263 +
1622924280.5211434-UTR-S-dermatodea_contig13268:6480..67561622924280.5211434-UTR-S-dermatodea_contig13268:6480..6756Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13268 6481..6756 +
1694079147.4916446-UTR-S-dermatodea_contig13268:6480..67561694079147.4916446-UTR-S-dermatodea_contig13268:6480..6756Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13268 6481..6756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.450626-CDS-S-dermatodea_contig13268:2263..22871622924280.450626-CDS-S-dermatodea_contig13268:2263..2287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 2264..2287 +
1694079147.3961492-CDS-S-dermatodea_contig13268:2263..22871694079147.3961492-CDS-S-dermatodea_contig13268:2263..2287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 2264..2287 +
1622924280.4620132-CDS-S-dermatodea_contig13268:3474..37111622924280.4620132-CDS-S-dermatodea_contig13268:3474..3711Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 3475..3711 +
1694079147.4095514-CDS-S-dermatodea_contig13268:3474..37111694079147.4095514-CDS-S-dermatodea_contig13268:3474..3711Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 3475..3711 +
1622924280.470262-CDS-S-dermatodea_contig13268:4141..42731622924280.470262-CDS-S-dermatodea_contig13268:4141..4273Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 4142..4273 +
1694079147.4184759-CDS-S-dermatodea_contig13268:4141..42731694079147.4184759-CDS-S-dermatodea_contig13268:4141..4273Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 4142..4273 +
1622924280.4809036-CDS-S-dermatodea_contig13268:4762..49301622924280.4809036-CDS-S-dermatodea_contig13268:4762..4930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 4763..4930 +
1694079147.4404752-CDS-S-dermatodea_contig13268:4762..49301694079147.4404752-CDS-S-dermatodea_contig13268:4762..4930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 4763..4930 +
1622924280.4898055-CDS-S-dermatodea_contig13268:5397..55201622924280.4898055-CDS-S-dermatodea_contig13268:5397..5520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 5398..5520 +
1694079147.4597168-CDS-S-dermatodea_contig13268:5397..55201694079147.4597168-CDS-S-dermatodea_contig13268:5397..5520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 5398..5520 +
1622924280.500146-CDS-S-dermatodea_contig13268:5818..59861622924280.500146-CDS-S-dermatodea_contig13268:5818..5986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 5819..5986 +
1694079147.4744263-CDS-S-dermatodea_contig13268:5818..59861694079147.4744263-CDS-S-dermatodea_contig13268:5818..5986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 5819..5986 +
1622924280.511607-CDS-S-dermatodea_contig13268:6399..64801622924280.511607-CDS-S-dermatodea_contig13268:6399..6480Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 6400..6480 +
1694079147.4827604-CDS-S-dermatodea_contig13268:6399..64801694079147.4827604-CDS-S-dermatodea_contig13268:6399..6480Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13268 6400..6480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13268.1941.1prot_S-dermatodea_contig13268.1941.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13268 2264..6480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13268.1941.1

>prot_S-dermatodea_contig13268.1941.1 ID=prot_S-dermatodea_contig13268.1941.1|Name=mRNA_S-dermatodea_contig13268.1941.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=311bp
MVSFRGAMEHLRAAAAAKGTVVANKNSVASTRGAAYLAEGNASGDGKDGE
SSQQKDPAMEVVLARLLTDTLASLTRKFEKAALSSGEISGACVIAGLYCE
GALVLANIGDCQAVYHGQVKSAPGAAVTAQTTIHDASNPGEVNRFLTAGG
FISPSGRFQGILEPSRTVGDVDVKAGAPKGCIASFPELFKVDIASEVFGG
ENPLTPPFLVLATDGIWDETSATTVVDEVKDGIAKIQAHKRRFTMMEGHR
RDSSFGSTTFTDGESDSEEEETEFCGSGEWAEQGMDLAERVVALARGRYD
DATALVVVFE*
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mRNA from alignment at S-dermatodea_contig13268:2189..6756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13268.1941.1 ID=mRNA_S-dermatodea_contig13268.1941.1|Name=mRNA_S-dermatodea_contig13268.1941.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4568bp|location=Sequence derived from alignment at S-dermatodea_contig13268:2189..6756+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGACTTGCTGGGCCTTCGCGACGTTCGACGGACATGCCGGACCGGCGTG
CGCGCACTTCCTGAAGGAGAACTTCATGGTGAGTTTCCGAGGGGCGATGG
TACGAAGGCTTTAGGGTTTGTTGTTGGCTCTTTTTGTGACAAGGTTGGCT
GTTGGGTGCTTTTGGCGGGGGCTGAAACGAACGACCAGACATCCGTGAGA
CGCGCGGCAGCTCTTGTGTATTGTGTATTTTGTTGCATTTTGTCGCCCGG
ACTGCCTCATCATAAAGCAGCACGGGGTGTATGCAATATCGATACGATAC
ATCAATCAGCCCGAACGGAAGAGGCGATGGTGCCAATCGCCCGTTTCTCG
CGATGGGTTTAATATTCCCTCTAGGTCCATGACAGATTTAACGTTTGCAA
ACGGCCTTGTAACGGTGTGCGCAGTTGTCATGACGCGAAAAACACGTTTG
AGAGTTTGGGAGGGGATTACGTTATACCTGTGTGCGCATATGATACAACA
CAACAGAGTTCGCACGACTCGTACGCGCGATCGTGTTTTGTGAAATTGTT
CTGGTTGAAAAGGCGGCAAGTTGCATCGGTCGAGCTTGAACTTATTCCTG
AGTCGCTCCGCTGTCCGAAGAAGCGGCGCAAACGCCACAATTCGAACCAG
GCCGGCGGCGCTTTTACAGATTCCCCGCCACGGCGCGCAAATATTTTTGC
CAGCGGAGAAATTGTAGATGCTTGGTCGCGCCGTCCCTCGTTTTCAAGGT
TGATCGTTGCTGCCTCTGTTCTCCCTCTACAAGACCCCAGCTTGTCGAGA
AAATAAAACGTCACCTCAGAAAAGTCACCTTGGAAATAAAGCCTGTGATT
GGCCAGGATTTTACGGTCCCGCCGGCCAAGGTGACTTTCTGGTTTGATTG
AAGGTGACAAATTTTACTTGCCCGGGTAATTAAAATTTGTCACCTTGGGC
CGTTGGAAAGTCACCTGCGAACCCATATTGACAGCGCCCGCCGGGTAGGA
CAGCTGATTCGCCGCATTTGGCAGGTTCATTTTTCTGAGATGACTTTTTT
ATTTTCTCGGCAAGACAAAAACAGCAAAAACAAACTCACCTCACCCCAAG
GTGGTTTTTCTGAGGTGACTTTTTATTTTCTCGATAAGCTGGGGTCTAAT
GGCAATTGCCATGAGAGCGGCACCGGTGTTGCGTGACCCTCGTTGAAATC
TGGCGTGCCACATACTTGAACACTGTTTGTACTAAGCTTGCTCTCCTCCG
ATGCATGCGTGACCGAACCGAAACAATTTTTGTCAGGAACACCTGCGCGC
CGCCGCCGCGGCGAAGGGCACGGTCGTCGCCAACAAAAACTCCGTCGCCT
CGACACGAGGAGCAGCCTACCTCGCCGAGGGCAACGCGTCAGGAGACGGA
AAGGATGGAGAGTCATCGCAGCAAAAAGACCCGGCCATGGAGGTCGTACT
GGCGCGGCTGCTGACCGACACGCTCGCCTCGCTGACGAGGAAGTTTGAAA
AGGCCGCTCTGTCCTCTGGAGAGGTGTGTGTGTGTGTGTATGGTTGCGTG
TGTGACTGCGTTTGGGGCGTTCGCGCATAGTGTGGAGGCCGTGAACGGCT
ATTTCGTTGGGCGGGGGGGGGGGGAGAAGTGTTTTGGTGGTGGGATTGGC
GGGTCTCGGTTAGGCGCACGCGCATTTTTGGTGTCTCGCGCCGGCTGTGA
GTATATCTACTGTACAAGTATCCTGTGCTGCGTTCGGCTGATTTCCCGCG
CTACAAGTGATTAGGTTGGCACCCATTCCGTTGTACGCGCGCTACTGCTG
CTGCATACAGTGCATGCAGGATGCATACATGCAGGCATCTGTCGCTCTTT
TTTCGACATGGATAAATTGACCACGATCCCTGTTGTGTTTGCGTCTTGAT
CTCGTGTCGTGTGCCGGTGATTTGCTTTTACCTGCCGACCCGACCCCTCG
CAGATCTCGGGCGCGTGCGTCATCGCCGGGCTGTACTGCGAGGGCGCCCT
CGTGTTGGCAAACATCGGCGACTGCCAGGCCGTGTACCACGGGCAGGTCA
AGAGCGCGCCGGGGGCGGCGGTGACAGCGCAGACGGTGAGGAGTCGCGGA
TCCCTTGCCGTGTTAAGTTGGCATGGACGCATGCCCTGTTGCAGTACTTT
TATGGTACACGCGTTGTGCAAGTGCTGCGGCGACATCGTTGGTACCTTGT
GCCGTGGCGCCCCTCCCGCGTAGCCGATTGTATTTCTTTTTCTTCTGCTT
GTTTGCCGCTGGAACCCCTCTCGGGGTGGCGATCTTTTTTGTCGCGAAGC
TATAATACGATACCGTGATACCCGGTTGCACGCACATGCGTCTTCGTCAG
GCCACCCGCCGCCGTTGCGTTGTCCACCACACGTCATGGTTCACCTCTCG
CGGTTCTGCCGGTACCTCCGCGGTGTGCGCGCACGCCCCGCTCTCATCCC
CTATAGCCTAGACACTGCACCGCACACGTGAGCCACCAGCGACGACATGA
CCGACGTTCCCGTTTGGCTTACCGATTACCGATCCTTTCGTGTCTTACAC
CTGTCGCTTCCGCGCAACCCGCAGACCATTCACGACGCCTCGAACCCGGG
AGAGGTGAACCGATTCCTCACGGCCGGCGGCTTCATCAGCCCCTCCGGCC
GCTTCCAGGGCATCCTCGAGCCGAGCCGGACCGTTGGCGATGTGGATGTG
AAGGCGGGCGCTCCGAAGGGCTGCATCGCGTCGTTCCCCGAGGTGAGACC
GCGGTACAAGTATATACATATATTTATATATATATATATACACCTGTACT
TGTATATTTTTTCCCTCATTTAATTTTGGTGGACGTGCTGCCACGTTGAA
GACCAAAATCGTTTTTGCTCGGCTGCTCGGCGTTGGGGCACAGCAGTAGT
ATAGTATAGTATAGTATAGGAAAGTATAGTACCTTGGTGGTGTTGTGATG
AGGGCGGACAGGTGCGTGCGTGCGTGCGTACTGTAGGGCCCTGCGAAAGT
GTTCTGTTGTGTTGCATCTGCTTCGACGGGGGGGTAACGTAGCGTTTTGA
CGGCGTGTGCCAGGACGGGTCGCGCTTGACCAAACCAGCACGTGCCTGTC
GTGATTGCTGACCCCCCCCCTGCCCCCTGCCCCCCACACAAACGTAATGG
CATTATTGTGTGTACGTACTTTCCCGCCAAACCGTGTTGCTCGCCGCTGC
CTGCAACAGCTCTTCAAGGTTGACATCGCGAGCGAGGTGTTCGGAGGGGA
GAACCCCTTGACCCCTCCCTTTCTCGTGCTTGCGACCGACGGCATCTGGG
ACGAGACGAGTGCCACCACCGTCGTCGACGAGGTGCGTTTTGGAGACTCT
TTTGTGGCTTGCGTGTTGACCAGTAGATTTATTAGATATACAACGTTCTA
AACCACTAGCGCGGATTGGGCGCAAGGAACACGCTTGCGTTAGCTGGCGG
GCGTGTTGACGGCGAGGGGCGATGACGAACCGGAGTAGCCGTTGCCGATC
CCGATCCCGTGCGAGGCGCCAGAAACACGGCCTTTGCGCTCGTGCAGCGG
GAGACCCGACGTTTACCGCCCCCTGCCCGGCCCCTGTTACTGGCACTCAC
GCGTTCGTTTGTTCTTTGCCGGCTCCGCAGGTGAAGGATGGCATCGCGAA
GATCCAAGCGCACAAGCGACGCTTCACCATGATGGAAGGGCACCGGCGGG
ACTCGTCCTTCGGCTCAACCACCTTCACTGACGGGGAGAGCGACTCGGAA
GAGGAAGAGACCGAATTTTGCGGCAGCGGCGAGTGGGCCGAGCAAGGGGT
GAGAGCGAGTCCGCTGCTTATTCGCATCCATACTGCAGTCTACACCAGTC
AATTCTCAAGACATGTTCGTATACAAATACCGTATGATACAAGGATGCAA
GTACACATGGATCTTTTTTTGCCGTTTTTAGTTTTGATCATATCGGATCG
TTTTCTTTGATGTGAGGCATGTGGCCCGTAGCGGCAGAGCTGCGTTTTTG
TTTGTTTGTTTGTTTGCTGTGACCGCTGGTGTGTGGAGGCGCAGGCAGCG
TCACCGAGCAATGCTTGTAGTCGATTTTTGTACATATGTCGCGGGGAACT
TGCTCACGCTGAAGCTGTCTCATGTCGTCTCACCTCCGCTTCTAATCCCA
CTTCTCACCCGTGCCGTTCTCTCTGCCCACGCGCCGTTTTTTTTCTCTTT
TTTCTTGACAGATGGATCTCGCGGAACGAGTTGTTGCCCTCGCCAGGGGG
AGATACGACGATGCCACCGCGCTCGTGGTGGTGTTCGAGTGACGGGAAAA
AAAATAACACACACACACAGGATGCCGTTGTCGTTGCTATTATGTTTCAG
TAACATACCCGCGCCTATTTGTTGCGTTCGGCTCCGCGCAGCTGTGTTGC
TGAGAGCGAACGAGGGTACAACAGAAAGCACACAGCGCTTACTGCTGTAG
CGTAATCGTGTGTGTGTTTCCTGGGTTTGCTTGTTGTTGTTGGCGCAACC
CACTCCCCGCTGCTTGCCTGCATGTGCGATTTTCCCGATTTGCCGGTAAA
CGCATGCGCGGAGGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13268:2189..6756+

>mRNA_S-dermatodea_contig13268.1941.1 ID=mRNA_S-dermatodea_contig13268.1941.1|Name=mRNA_S-dermatodea_contig13268.1941.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1866bp|location=Sequence derived from alignment at S-dermatodea_contig13268:2189..6756+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGAGTTTCCGAGGGGCGATGATGGTGAGTTTCCGAGGGGCGATGGA
ACACCTGCGCGCCGCCGCCGCGGCGAAGGGCACGGTCGTCGCCAACAAAA
ACTCCGTCGCCTCGACACGAGGAGCAGCCTACCTCGCCGAGGGCAACGCG
TCAGGAGACGGAAAGGATGGAGAGTCATCGCAGCAAAAAGACCCGGCCAT
GGAGGTCGTACTGGCGCGGCTGCTGACCGACACGCTCGCCTCGCTGACGA
GGAAGTTTGAAAAGGCCGCTCTGTCCTCTGGAGAGGAACACCTGCGCGCC
GCCGCCGCGGCGAAGGGCACGGTCGTCGCCAACAAAAACTCCGTCGCCTC
GACACGAGGAGCAGCCTACCTCGCCGAGGGCAACGCGTCAGGAGACGGAA
AGGATGGAGAGTCATCGCAGCAAAAAGACCCGGCCATGGAGGTCGTACTG
GCGCGGCTGCTGACCGACACGCTCGCCTCGCTGACGAGGAAGTTTGAAAA
GGCCGCTCTGTCCTCTGGAGAGATCTCGGGCGCGTGCGTCATCGCCGGGC
TGTACTGCGAGGGCGCCCTCGTGTTGGCAAACATCGGCGACTGCCAGGCC
GTGTACCACGGGCAGGTCAAGAGCGCGCCGGGGGCGGCGGTGACAGCGCA
GACGATCTCGGGCGCGTGCGTCATCGCCGGGCTGTACTGCGAGGGCGCCC
TCGTGTTGGCAAACATCGGCGACTGCCAGGCCGTGTACCACGGGCAGGTC
AAGAGCGCGCCGGGGGCGGCGGTGACAGCGCAGACGACCATTCACGACGC
CTCGAACCCGGGAGAGGTGAACCGATTCCTCACGGCCGGCGGCTTCATCA
GCCCCTCCGGCCGCTTCCAGGGCATCCTCGAGCCGAGCCGGACCGTTGGC
GATGTGGATGTGAAGGCGGGCGCTCCGAAGGGCTGCATCGCGTCGTTCCC
CGAGACCATTCACGACGCCTCGAACCCGGGAGAGGTGAACCGATTCCTCA
CGGCCGGCGGCTTCATCAGCCCCTCCGGCCGCTTCCAGGGCATCCTCGAG
CCGAGCCGGACCGTTGGCGATGTGGATGTGAAGGCGGGCGCTCCGAAGGG
CTGCATCGCGTCGTTCCCCGAGCTCTTCAAGGTTGACATCGCGAGCGAGG
TGTTCGGAGGGGAGAACCCCTTGACCCCTCCCTTTCTCGTGCTTGCGACC
GACGGCATCTGGGACGAGACGAGTGCCACCACCGTCGTCGACGAGCTCTT
CAAGGTTGACATCGCGAGCGAGGTGTTCGGAGGGGAGAACCCCTTGACCC
CTCCCTTTCTCGTGCTTGCGACCGACGGCATCTGGGACGAGACGAGTGCC
ACCACCGTCGTCGACGAGGTGAAGGATGGCATCGCGAAGATCCAAGCGCA
CAAGCGACGCTTCACCATGATGGAAGGGCACCGGCGGGACTCGTCCTTCG
GCTCAACCACCTTCACTGACGGGGAGAGCGACTCGGAAGAGGAAGAGACC
GAATTTTGCGGCAGCGGCGAGTGGGCCGAGCAAGGGGTGAAGGATGGCAT
CGCGAAGATCCAAGCGCACAAGCGACGCTTCACCATGATGGAAGGGCACC
GGCGGGACTCGTCCTTCGGCTCAACCACCTTCACTGACGGGGAGAGCGAC
TCGGAAGAGGAAGAGACCGAATTTTGCGGCAGCGGCGAGTGGGCCGAGCA
AGGGATGGATCTCGCGGAACGAGTTGTTGCCCTCGCCAGGGGGAGATACG
ACGATGCCACCGCGCTCGTGGTGGTGTTCGAGTGAATGGATCTCGCGGAA
CGAGTTGTTGCCCTCGCCAGGGGGAGATACGACGATGCCACCGCGCTCGT
GGTGGTGTTCGAGTGA
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