mRNA_S-dermatodea_contig13267.1940.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13267.1940.1
Unique NamemRNA_S-dermatodea_contig13267.1940.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13267.1940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13267contigS-dermatodea_contig13267:3602..4274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size673
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.3947656-CDS-S-dermatodea_contig13267:3601..40061622924280.3947656-CDS-S-dermatodea_contig13267:3601..4006Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13267 3602..4006 +
1694079147.3363724-CDS-S-dermatodea_contig13267:3601..40061694079147.3363724-CDS-S-dermatodea_contig13267:3601..4006Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13267 3602..4006 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.4047892-UTR-S-dermatodea_contig13267:4006..42741622924280.4047892-UTR-S-dermatodea_contig13267:4006..4274Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13267 4007..4274 +
1694079147.351559-UTR-S-dermatodea_contig13267:4006..42741694079147.351559-UTR-S-dermatodea_contig13267:4006..4274Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13267 4007..4274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13267.1940.1prot_S-dermatodea_contig13267.1940.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13267 3602..4006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13267.1940.1

>prot_S-dermatodea_contig13267.1940.1 ID=prot_S-dermatodea_contig13267.1940.1|Name=mRNA_S-dermatodea_contig13267.1940.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp
MDPNARSVFYKSLLLQGHCVRTHHCSKTRRKARVPPVPRLQNRRNGKAIE
AANFASGRTDHPRHQRRPTRWQRQINARHITRVHTRTTNQRHGRLLCFPF
SERHGGGKKVHTHTHTQSTYHETAALLRRYTIIK*
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mRNA from alignment at S-dermatodea_contig13267:3602..4274+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13267.1940.1 ID=mRNA_S-dermatodea_contig13267.1940.1|Name=mRNA_S-dermatodea_contig13267.1940.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=673bp|location=Sequence derived from alignment at S-dermatodea_contig13267:3602..4274+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACCCCAACGCTCGCTCTGTGTTTTACAAATCTTTGTTGCTTCAGGG
GCATTGCGTGCGTACACATCATTGTTCAAAAACGCGGCGAAAAGCCCGTG
TCCCGCCGGTTCCTCGTCTACAAAATAGGCGAAACGGCAAAGCGATTGAA
GCAGCAAACTTCGCATCGGGCAGAACCGATCACCCACGTCACCAGCGCAG
GCCAACAAGATGGCAACGCCAAATAAATGCACGACACATAACCCGCGTCC
ACACGAGGACCACAAACCAGCGCCACGGGCGGCTGCTCTGCTTTCCCTTC
AGCGAGCGGCACGGGGGTGGCAAAAAAGTACACACACATACACACACACA
ATCAACGTACCACGAAACAGCTGCGCTATTACGGAGGTACACTATAATCA
AGTAATCAGGACCAAATCTCACGACCATGAATACCCAACTGTCCCGACCA
TGAGCACCCAGACAACACCAAAACCTCATGACAAAAAAAACAACAACAGG
CCTGGCCTATACGACAAGCACCGACCGTGACTACAATACCCAATCGTTCC
GGCCTATTTGTTTTTGCGAAGTTAAGATTTGTGACGAATTTGGACCTATT
TGGACCTGTTAACTATGGTCCTCCATAACAGGAGGTTTTGCGGTTAACGC
ATCGATTTCCCCCCCCCTTTTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13267:3602..4274+

>mRNA_S-dermatodea_contig13267.1940.1 ID=mRNA_S-dermatodea_contig13267.1940.1|Name=mRNA_S-dermatodea_contig13267.1940.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at S-dermatodea_contig13267:3602..4274+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACCCCAACGCTCGCTCTGTGTTTTACAAATCTTTGTTGCTTCAGGG
GCATTGCGTGCGTACACATCATTGTTCAAAAACGCGGCGAAAAGCCCGTG
TCCCGCCGGTTCCTCGTCTACAAAATAGGCGAAACGGCAAAGCGATTGAA
GCAGCAAACTTCGCATCGGGCAGAACCGATCACCCACGTCACCAGCGCAG
GCCAACAAGATGGCAACGCCAAATAAATGCACGACACATAACCCGCGTCC
ACACGAGGACCACAAACCAGCGCCACGGGCGGCTGCTCTGCTTTCCCTTC
AGCGAGCGGCACGGGGGTGGCAAAAAAGTACACACACATACACACACACA
ATCAACGTACCACGAAACAGCTGCGCTATTACGGAGGTACACTATAATCA
AGTAAATGGACCCCAACGCTCGCTCTGTGTTTTACAAATCTTTGTTGCTT
CAGGGGCATTGCGTGCGTACACATCATTGTTCAAAAACGCGGCGAAAAGC
CCGTGTCCCGCCGGTTCCTCGTCTACAAAATAGGCGAAACGGCAAAGCGA
TTGAAGCAGCAAACTTCGCATCGGGCAGAACCGATCACCCACGTCACCAG
CGCAGGCCAACAAGATGGCAACGCCAAATAAATGCACGACACATAACCCG
CGTCCACACGAGGACCACAAACCAGCGCCACGGGCGGCTGCTCTGCTTTC
CCTTCAGCGAGCGGCACGGGGGTGGCAAAAAAGTACACACACATACACAC
ACACAATCAACGTACCACGAAACAGCTGCGCTATTACGGAGGTACACTAT
AATCAAGTAA
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