mRNA_S-dermatodea_contig13243.1932.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13243.1932.1
Unique NamemRNA_S-dermatodea_contig13243.1932.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: D7FJG2_ECTSI (Histone acetyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG2_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.830e-28
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 QSSPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            +SSPE+YNLACILTFPP+QRKGYGKLLISLSYELSKREH VGSPEKPLSDLGKLSYR
Sbjct:  323 KSSPEEYNLACILTFPPFQRKGYGKLLISLSYELSKREHMVGSPEKPLSDLGKLSYR 379
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: A0A7S2US38_9STRA (Histone acetyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US38_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.500e-28
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QSSPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            + SPE YNLACILTFPPYQRKGYGK LISLSYELSKRE AVGSPEKPLSDLGKLSYR
Sbjct:  155 KQSPEDYNLACILTFPPYQRKGYGKFLISLSYELSKREGAVGSPEKPLSDLGKLSYR 211
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: A0A836C817_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C817_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.070e-27
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 QSSPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            ++SPE+YNLACILTFPPYQRKGYGK LISLSYELSKRE AVGSPEKPLSDLGKLSYR
Sbjct:  294 KTSPEEYNLACILTFPPYQRKGYGKFLISLSYELSKREGAVGSPEKPLSDLGKLSYR 350
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: A0A7S3XQH0_HETAK (Histone acetyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQH0_HETAK)

HSP 1 Score: 108 bits (269), Expect = 3.700e-27
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    7 SPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            SPE+YNLACILTFPPYQRKGYGKLLIS SYELSKRE  VGSPEKPLSDLGKLSYR
Sbjct:  154 SPEEYNLACILTFPPYQRKGYGKLLISFSYELSKREGKVGSPEKPLSDLGKLSYR 208
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: A0A7S1CDN2_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDN2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.330e-25
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 QSSPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            +SSPE YNLACILTFPP+QRKGYGK LISLSYELSK E  VGSPEKPLSDLGKLSYR
Sbjct:  308 KSSPEDYNLACILTFPPFQRKGYGKFLISLSYELSKLERRVGSPEKPLSDLGKLSYR 364
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: A0A812SUI0_9DINO (Histone acetyltransferase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812SUI0_9DINO)

HSP 1 Score: 104 bits (259), Expect = 3.910e-25
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 QSSPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            +SSP+ YNLACILTFPPYQRKGYGK LIS SYELSK+E  VGSPEKPLSDLG+LSYR
Sbjct:  257 KSSPQDYNLACILTFPPYQRKGYGKFLISCSYELSKKEKKVGSPEKPLSDLGRLSYR 313
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: D3B5D4_POLPP (HAM group protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B5D4_POLPP)

HSP 1 Score: 97.4 bits (241), Expect = 2.530e-24
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 QSSPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            + SP+ YNLACILT PP+QRKG+GKLLIS SYELSK+EH +G+PEKPLSDLG LS+R
Sbjct:   19 KDSPDGYNLACILTLPPFQRKGFGKLLISFSYELSKKEHKIGAPEKPLSDLGLLSFR 75
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: A0A482RUU7_9ARCH (Histone acetyltransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUU7_9ARCH)

HSP 1 Score: 102 bits (253), Expect = 3.410e-24
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 QSSPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            + S EQYNLACILTFPP+QRKGYGKLLIS+SYEL++RE  VGSPEKPLSDLG++SYR
Sbjct:  317 KQSAEQYNLACILTFPPFQRKGYGKLLISISYELTRREGGVGSPEKPLSDLGRISYR 373
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: A0A7S3H4S7_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4S7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.740e-24
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 QSSPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            + S E YNLACILTFPPYQRKGYGK L+S+SYEL+KRE+  GSPEKPLSDLGK+SYR
Sbjct:  266 KQSQENYNLACILTFPPYQRKGYGKFLMSISYELTKRENTTGSPEKPLSDLGKISYR 322
[Close]
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Match: A0A8J9SXW0_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SXW0_PHATR)

HSP 1 Score: 95.9 bits (237), Expect = 5.310e-24
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    7 SPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSDLGKLSYR 171
            S E YNLACILTFPPYQ+ G+GK +ISLSYELSKRE+  GSPEKPLSDLGK+SYR
Sbjct:    2 SGEGYNLACILTFPPYQKAGFGKFIISLSYELSKRENKTGSPEKPLSDLGKVSYR 56
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13243.1932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJG2_ECTSI1.830e-2892.98Histone acetyltransferase n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2US38_9STRA7.500e-2891.23Histone acetyltransferase n=1 Tax=Fibrocapsa japon... [more]
A0A836C817_9STRA2.070e-2791.23Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A7S3XQH0_HETAK3.700e-2792.73Histone acetyltransferase n=1 Tax=Heterosigma akas... [more]
A0A7S1CDN2_9STRA1.330e-2587.72Histone acetyltransferase (Fragment) n=1 Tax=Bicos... [more]
A0A812SUI0_9DINO3.910e-2584.21Histone acetyltransferase n=1 Tax=Symbiodinium sp.... [more]
D3B5D4_POLPP2.530e-2475.44HAM group protein n=1 Tax=Polysphondylium pallidum... [more]
A0A482RUU7_9ARCH3.410e-2480.70Histone acetyltransferase (Fragment) n=1 Tax=archa... [more]
A0A7S3H4S7_9STRA4.740e-2478.95Histone acetyltransferase (Fragment) n=1 Tax=Spume... [more]
A0A8J9SXW0_PHATR5.310e-2480.00Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13243contigS-dermatodea_contig13243:6124..6294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue3.9e-23
Seed eggNOG ortholog2880.D7FJG2
Preferred nameKAT8
KEGG koko:K11308
GOsGO:0000075,GO:0000077,GO:0000123,GO:0000228,GO:0000775,GO:0000776,GO:0000803,GO:0000805,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0004402,GO:0004468,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005705,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007549,GO:0008080,GO:0008134,GO:0008150,GO:0008152,GO:0009047,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010212,GO:0010468,GO:0010485,GO:0010506,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0016043,GO:0016407,GO:0016410,GO:0016456,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023052,GO:0030097,GO:0030099,GO:0030154,GO:0030330,GO:0031056,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031399,GO:0031570,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034212,GO:0034641,GO:0034708,GO:0035064,GO:0035065,GO:0035097,GO:0035556,GO:0036211,GO:0040029,GO:0042393,GO:0042770,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044545,GO:0044665,GO:0045786,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046536,GO:0046972,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0060548,GO:0061733,GO:0065007,GO:0065009,GO:0070013,GO:0071214,GO:0071339,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0072331,GO:0072487,GO:0080090,GO:0080134,GO:0080135,GO:0090239,GO:0090304,GO:0097159,GO:0098687,GO:0104004,GO:0140030,GO:0140034,GO:1901360,GO:1901363,GO:1901564,GO:1901983,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2000756,GO:2000873,GO:2001020,GO:2001141
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5027@1,KOG2747@2759
EC2.3.1.48
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924279.5999355-CDS-S-dermatodea_contig13243:6123..62941622924279.5999355-CDS-S-dermatodea_contig13243:6123..6294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13243 6124..6294 +
1694079146.6794698-CDS-S-dermatodea_contig13243:6123..62941694079146.6794698-CDS-S-dermatodea_contig13243:6123..6294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13243 6124..6294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13243.1932.1prot_S-dermatodea_contig13243.1932.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13243 6124..6294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13243.1932.1

>prot_S-dermatodea_contig13243.1932.1 ID=prot_S-dermatodea_contig13243.1932.1|Name=mRNA_S-dermatodea_contig13243.1932.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=57bp
QSSPEQYNLACILTFPPYQRKGYGKLLISLSYELSKREHAVGSPEKPLSD
LGKLSYR
back to top

mRNA from alignment at S-dermatodea_contig13243:6124..6294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13243.1932.1 ID=mRNA_S-dermatodea_contig13243.1932.1|Name=mRNA_S-dermatodea_contig13243.1932.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at S-dermatodea_contig13243:6124..6294+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCTCGCCGGAGCAGTACAACCTGGCGTGTATCCTCACGTTCCCTCC
TTACCAGCGCAAGGGCTACGGCAAGCTGCTGATCTCGCTCTCGTACGAGC
TCAGCAAGCGGGAGCACGCCGTCGGATCTCCGGAGAAGCCTCTGTCCGAC
CTGGGGAAGCTCAGCTACCGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13243:6124..6294+

>mRNA_S-dermatodea_contig13243.1932.1 ID=mRNA_S-dermatodea_contig13243.1932.1|Name=mRNA_S-dermatodea_contig13243.1932.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at S-dermatodea_contig13243:6124..6294+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCTCGCCGGAGCAGTACAACCTGGCGTGTATCCTCACGTTCCCTCC
TTACCAGCGCAAGGGCTACGGCAAGCTGCTGATCTCGCTCTCGTACGAGC
TCAGCAAGCGGGAGCACGCCGTCGGATCTCCGGAGAAGCCTCTGTCCGAC
CTGGGGAAGCTCAGCTACCGACAGTCCTCGCCGGAGCAGTACAACCTGGC
GTGTATCCTCACGTTCCCTCCTTACCAGCGCAAGGGCTACGGCAAGCTGC
TGATCTCGCTCTCGTACGAGCTCAGCAAGCGGGAGCACGCCGTCGGATCT
CCGGAGAAGCCTCTGTCCGACCTGGGGAAGCTCAGCTACCGA
back to top