mRNA_S-dermatodea_contig13227.1923.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13227.1923.1
Unique NamemRNA_S-dermatodea_contig13227.1923.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13227.1923.1 vs. uniprot
Match: D7FUH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH8_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.770e-15
Identity = 61/162 (37.65%), Postives = 79/162 (48.77%), Query Frame = 1 
Query:    1 KTFVDQGYTVNQIREALQRENELCPELSLSECQRQVFRGSISTISVCDNGAQDCSSVGTLDPVLCMEESEYPTDLWQNVDFSGLEYTERTCCGSNYTNSDTEASCVVALETGNSGGDSDSNGKTTIGVGLAGXXXXXXXXXXXXXFVVHKRKKKNQLPKRDR 486
            +TFVDQGYT +++REAL+ +NE CP  SL+ECQRQ  R             Q     G LD          P     +      +YT+RTCCGSN+T++ TE SC                G   I      XXXXXX       + VH++KK+N+ PKRDR
Sbjct:    6 QTFVDQGYTEDEVREALESQNEACPTFSLTECQRQCVR-------------QHHRGRGLLD-------GRQPGARPVHGGIGMWDYTQRTCCGSNFTSTSTEPSCXXXXXXXXXXXXXXMEG-ANIXXXXXXXXXXXXGLILTALYFVHRKKKRNRSPKRDR 146
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13227.1923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUH8_ECTSI2.770e-1537.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13227contigS-dermatodea_contig13227:1296..6506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size489
Cds size489
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13227.1923.1prot_S-dermatodea_contig13227.1923.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13227 1296..6506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.9203906-CDS-S-dermatodea_contig13227:1295..14151622924278.9203906-CDS-S-dermatodea_contig13227:1295..1415Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 1296..1415 -
1694079146.1868367-CDS-S-dermatodea_contig13227:1295..14151694079146.1868367-CDS-S-dermatodea_contig13227:1295..1415Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 1296..1415 -
1622924278.930586-CDS-S-dermatodea_contig13227:2375..24961622924278.930586-CDS-S-dermatodea_contig13227:2375..2496Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 2376..2496 -
1694079146.1961358-CDS-S-dermatodea_contig13227:2375..24961694079146.1961358-CDS-S-dermatodea_contig13227:2375..2496Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 2376..2496 -
1622924278.940761-CDS-S-dermatodea_contig13227:3548..35851622924278.940761-CDS-S-dermatodea_contig13227:3548..3585Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 3549..3585 -
1694079146.205893-CDS-S-dermatodea_contig13227:3548..35851694079146.205893-CDS-S-dermatodea_contig13227:3548..3585Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 3549..3585 -
1622924278.9551392-CDS-S-dermatodea_contig13227:5321..54271622924278.9551392-CDS-S-dermatodea_contig13227:5321..5427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 5322..5427 -
1694079146.2163806-CDS-S-dermatodea_contig13227:5321..54271694079146.2163806-CDS-S-dermatodea_contig13227:5321..5427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 5322..5427 -
1622924278.9689927-CDS-S-dermatodea_contig13227:6401..65061622924278.9689927-CDS-S-dermatodea_contig13227:6401..6506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 6402..6506 -
1694079146.2277257-CDS-S-dermatodea_contig13227:6401..65061694079146.2277257-CDS-S-dermatodea_contig13227:6401..6506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13227 6402..6506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13227.1923.1

>prot_S-dermatodea_contig13227.1923.1 ID=prot_S-dermatodea_contig13227.1923.1|Name=mRNA_S-dermatodea_contig13227.1923.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
KTFVDQGYTVNQIREALQRENELCPELSLSECQRQVFRGSISTISVCDNG
AQDCSSVGTLDPVLCMEESEYPTDLWQNVDFSGLEYTERTCCGSNYTNSD
TEASCVVALETGNSGGDSDSNGKTTIGVGLAGGVAVAVVLILLALFVVHK
RKKKNQLPKRDR*
back to top

mRNA from alignment at S-dermatodea_contig13227:1296..6506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13227.1923.1 ID=mRNA_S-dermatodea_contig13227.1923.1|Name=mRNA_S-dermatodea_contig13227.1923.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5211bp|location=Sequence derived from alignment at S-dermatodea_contig13227:1296..6506- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGACTTTTGTGGACCAAGGCTACACGGTGAACCAGATTCGCGAGGCCTT
GCAGCGCGAGAACGAGCTGTGCCCGGAGCTTTCCCTTTCCGAGTGCCAAC
GGCAGGTACGAGGACAAGGCAGCGGAGAGAATACGCTGTTATAGATAAAA
ACGAAAACAAGAGAAGATGCTCCTGTAGATGAAACGAAAACAAGAGAATA
TGCTGCTCTAGATAAAACGAAAACAGCAATTCCCCTTCGAAACGCGCGCA
GTGATTGATCATTCATGAAACGCCTCGTTTGGGTAGAGGTCGAGTCCGTC
AGGAGCACACCGATGAAAATCGCGGCAGTTCTGTTGTACTGCTGCACGTC
CGTGTGTTCGAGCTGTGCGTCCTCGTGGCTAGTGAACCGGCGACACTCTA
CGCTCTCGGTCGGCAAACGAGGTTCAGGGTTTTAATCCGGAGGACTTGAC
CTTGTCTTTTTTTTTCTTCCCGGCGAAAGCGCGAGGGCGTGAGTGATGAA
GGAAGCGATTTAAGCATGCTACGAGTAATTAGCGAGCTACGGGAGGGCCG
GACCCAATGCTCGATAAAAATCAAAGGCGTGTATGTGCCGGGGAGGGGGG
GGGGGGTGATCTTGTCCCCGGTTCGGACACCAAGGAGAATCTGGAAGTAA
ACCGTCGGTAGGATGCGAGAGAAAAACAAGGATGCCCTCGAATGTATTGA
AAAATAGAAATAAATTTAATAGCACAGAAATAAGTGTACAATCCATACCA
TCCCTCATCGGGACAGGGCCCGGTTGGACTTTGCTGTAACACAACACTGA
GACGATAGCATCGGCCGCCCGAAAGAGATCATCCTTAGTGGAGCATGGGT
CAGGCAACTCCCCAAGTATATTTTTCGGGTCAGCAGCAGGACAGCAGGAC
CTCGGCGAGCCGTTAGTCGCATGACCCGCGCCGAAGGAGTTTCACCGTGA
CCTTCGGCTTGTTTTTTTCTTGTTTGTTTCACTTTGTGTTTATTTTTTTG
TCTTTCGCGCGCACCTCTATTTTGTTTTTGCCTTTTTTGCCTTTTTTGCC
TTTTTTCTTTTCTCGATTTCCTTCCGCAGGTATTCCGGGGGTCGATCTCT
ACCATCAGCGTTTGCGACAACGGGGCGCAAGACTGCTCCAGCGTTGGCAC
CTTGGACCCCGTGCTCTGCATGGAAGAGTCAGAATGTGAGCATAGCAGCG
CGGAGTGGTCGCAACTCGCAGCACGAAACACGTGACTACTGCAAAACGGA
TTGCATTGCACGCAGGCCATTCATTGTTGGTCTCAATTATACTGGCGTGA
TACGCGCATAAAAAATGATTCCCGTACCGCTTTTCTCATACTTGATGTGA
GTTAAAGTGGGGACAAGTTCAAGAATAGCATACCCATTACATATGGTAGA
CAGGTCGCTTGCCGCATGGAAAGAAAAGCCCAGCCCGTCAAAGGTTGCGT
TGTCTTGTGTTTACCAAAACTAAGATTCATTGGGGTCATGATTTCGCAAC
ATTTTCTCATCAAAGCCTTGGGGGGGCAAAAACTGGAGAAAACCTGCTGT
AAAACAACGTTCCCGCCGCGCGGGCGTTCTGTTTTGTGTTTCGGTATAAA
TTAGAAAACCGCCGACGTCGTACGCTGTATCGATGCCCAAAACAATACGT
GAAGAATTGCAATGCGCTGTTTTTTGGCGTGCGTAGTACTCGCCCGCTCA
TGGAGCAAATATATATATATATACATATGTGGGTACCCACGTCCCAGTTC
GGATACAGCTGCCCTCGGCTTCAAAACAAACGAGAAAACCTGCTGTAAAA
CAACGTTCCCGCCGCGCGGGCGTTCTGTTTTGTGTTTCGGTATAAATTAG
AAAACCGCCGACGTCGTACGCTGTATCGATGCCCAAAAAAATGCGTGAAG
AATTGCAATGCGCTGTTTTTTGGCGTGCGTAGTACTCGCCCGCTCATGGC
GCAACCTTTATATATATATATATATACATATGTGGGTACCCACATCCCAG
TTCGGATACAGCTGCCCTCGGCTTCAAAACAAACGCGGTGGGTAGGGTGT
CTAGCGCAGAGGCAAAGATATATGTCTGCAAATTTTGTGAGCCTCCTGTG
ACTTGCCTGTCGTCGTTGCCAAGCAGGCGATGCCGCAAAGCTTCTCCGAG
GCGATGATGCGATCGTCTTCTGTACGGACCCGACCCTCCATTCCGCGGTC
ACTGGTTTTAACGCTCATGGCGGGGCGCCTCTACTTTACGCTTGCCTCTC
TTCCGAAAAGTTTTTCCTTAGCCTCGGAGACCGATTTTTTTTATTTCGCG
CCGTGGCGCCCCGCCCCCCCTCCCCCTCACCCCCCGCGCCCCCCGGCGGG
GGTGCCCTTGACGTTTTGCGCATCTGATAATGAGTAGGGTTCGGAAAATC
AGCAGATCCGTTATGGTGTGAAAATCAGATAAATGAAGGCTCTCACGTTC
GCTCAGGGAGATGGTCGCGGTTAGAGTTAGGGGGGGGGAAGGGGGGGGGG
TATGTACGATAATACCCGAAACTATGGAGTGAGTCCTGTTGTCTCACTCC
TTTTCAAGGCGGCCCAAACCAGCTATTCTGGAGGTTTTCCCTCCCTGATG
AGACACTTTATTAGTTGAAAAACAGAGAGCGAGCGCTGGGGCCCAACGTT
TTTTACGGGAGGGAAGATGGCCCAAGCTACACACACGCCGCTGGATACTC
ACATTTTTCTCGCCCCGTCGCCCCCACCACCTCCGCCCGACGCGTCCCCG
CCATCCCCGTTCGTTTCCTTCCCCGCCTACTCGTTGTTCGGCTCCCTGCC
TGACTTTTGTCCGGCCACCGTACTTTGGACGCCCGGGTCGGCCGCTGCTT
ATGTGCCTTTGGATGTGTCCTCGATGTCGTCTCTTCGCGCCGTCCGGCGT
GCTTTGTGGTTGTGGCTGCAGACCCGACGGATCTGTGGCAAAACGTCGAT
TTCTCCGGGTGAGAGGGAACTTCTCGCGTATCGTGTGCTTCGTAACGGCT
TTTTTATTATAGTATATATTGTAGTACTTGGGGTTGATTTGTTTTACTCC
CTCCTCCCGAGGTCGTAGGGATGCGAGGTCTATGGTCTAACGGCTACGGC
ATGCACGATCAATGAGTAATGAGTACCCGGTACACCCCCTCCTCCCGAGG
TTTTACGAGAGGTGATTTTTGGTCTCTTCTTTGTGCGGCTTTGAGTTCGC
TCGGGGTGTTTTCCTTCCCCCATCCTCCCGTTTTGTGTTTTTTTATGTAC
GAGTATGGTACTGTTGTAATTTTTACTGTGAGCGTATACTTTTTATGCCG
GATTGTACCACGATCGGTGCCTTTGTTTGTGTTTTCAGAAACGGCTGGTT
TTCCTGTTACCTCGGAGGCATGGGAAGAGTCCGTGGCGCAGGATGTTAGT
GGTTGGTCGTTGGTTCGATACATAGCGAGCATCGGTGTACATGGATTGGA
TTTGTCCTTGCGCGAAAGACTCTTTCTGCAGGCTGCCAGAGACGTTTCCA
AGGGCCTCGTGAACACGACACTCGCTTAGCCGTTTGAATGAAACGAGGTA
CATTTGTTGGGGAGGTCCAGCGGTTCAAAGGCACTACATGTTTACGCCAT
GCTCAGAGGTCGGCTCGAGAAAGGGCTATGACGTTGATTTTTTTTCGTTT
TTCCTTGATGCTATGATAGCTTCGTTTTTTTTTGTCTCAGGCATGCTTTC
TCAACAACACGCTGCCGCCGGGTCATGTCCTGCCTTGTGTCTTCTTGTTT
TGCCCTGGGTTGTGTGCGTATAATATTTTAATCTTCCCCCTCCGAGACGC
CCTTTCACGTTCCAATTGATACGGTTTTGGGCAGATCCGTAGGCTGAACG
AAACGTTTGTATGTGCTGAAATAGCGACGGTTCTGTTGATCTACTTGGTG
CGTTAAAGCGACCCTTCCGACAACTTTTCGTTTCGCTCCTTCCCTCTACC
CTCTCCTCTCCTCTCCTCTCCTGTACCGTCGTAATTTTTTCGCTGTTGGG
GTATTCAAAGGCTGGAGTACACGGAGAGGACGTGCTGCGGGTCGAACTAC
ACCAACAGCGATACGGAGGCGTCGTGCGTTGTAGCCCTCGAGACGGGGAA
CAGCGGCGGCGACTCGGACTCCAACGGGAAGGTGGTGAGTGCCCCTTTGC
TTTCTACACAAGGTTTGCTTTGCTAATTACGGAGGTACACTATAATCAAG
TAATCAGGACCAAATCTCATGACCATGAATACTAATACTAATACAATACC
CAACTATTCCGACCATGAAATAATATCACTACCCAAACAGCAACAAAAAT
ATCGCGAAAAACAAAAAACACGAGATATGGCCATATTCAACAACATTGAC
CTTGAAATCTCGATACAGTAGTGCCAGCCTGTTTTTTTTGTTTTTCTAGG
TTTGAGACTTGTGGAAAATTTGGACCTTGTTAACTATGGCCCTCTGTAAT
AGTCGTTGCCGGAAGCTCTAGATCTCTCTCTCTCTATATATATATATATA
TATCTCTCTCGGATTATTGTGTAAAGTCGATCGCTCGTGCTTGGTTGCAG
TGCCGTACCGAGTGATTCGTGCGTTCGGCTGCGTTTGCCTCGCGGCGCAC
GGGAGGATCTTTCAAGGTGTTTAGTACCCTTCTCGCCCACGTGCGAAGAC
TGCTTCACTCGGCGTTCGTGTTGATTTTGATGCCGCACGTGAGGCCCTTC
TTGGCATCCGAGTAGTATACCGTTTTCATGTAGCTCTCAGTTAAAAGAAT
CTTTGGATCCCACGGCCCCACCTGAGGGTGATTTTGCAAGGGGAAAATCT
GTGTTACGTGTTGGCTCGAGTTCCACCTTGGATGAGTACATAATACGCCA
TCGATGTCTCGGAAACCCTAGACCCGGAGATGGTACGATGGATACGCCAT
GCGTACGCCATGCGTCGCACAATCGACTAGCCTCGTCGTCCCCCGCCCGC
TGTCAGATTATTTGAAAACCTTTGCACCTGATTACTTGCGGGGGGCGGGC
GCGTGAGCAGTGGCTGACCTGAGCATTCCATCTCTGTCGTTGCTGTTGTG
GTATTTGCCTGCGGTTTTTGGTGGCCGTTAAACACCAGGAGACAACTATC
GGGGTGGGCTTGGCGGGAGGCGTTGCTGTGGCGGTGGTGCTGATCCTGCT
GGCCCTGTTCGTCGTGCACAAGAGGAAGAAGAAGAACCAGTTGCCGAAGC
GGGACAGGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13227:1296..6506-

>mRNA_S-dermatodea_contig13227.1923.1 ID=mRNA_S-dermatodea_contig13227.1923.1|Name=mRNA_S-dermatodea_contig13227.1923.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig13227:1296..6506- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGACTTTTGTGGACCAAGGCTACACGGTGAACCAGATTCGCGAGGCCTT
GCAGCGCGAGAACGAGCTGTGCCCGGAGCTTTCCCTTTCCGAGTGCCAAC
GGCAGAAGACTTTTGTGGACCAAGGCTACACGGTGAACCAGATTCGCGAG
GCCTTGCAGCGCGAGAACGAGCTGTGCCCGGAGCTTTCCCTTTCCGAGTG
CCAACGGCAGGTATTCCGGGGGTCGATCTCTACCATCAGCGTTTGCGACA
ACGGGGCGCAAGACTGCTCCAGCGTTGGCACCTTGGACCCCGTGCTCTGC
ATGGAAGAGTCAGAATGTATTCCGGGGGTCGATCTCTACCATCAGCGTTT
GCGACAACGGGGCGCAAGACTGCTCCAGCGTTGGCACCTTGGACCCCGTG
CTCTGCATGGAAGAGTCAGAATACCCGACGGATCTGTGGCAAAACGTCGA
TTTCTCCGGACCCGACGGATCTGTGGCAAAACGTCGATTTCTCCGGGCTG
GAGTACACGGAGAGGACGTGCTGCGGGTCGAACTACACCAACAGCGATAC
GGAGGCGTCGTGCGTTGTAGCCCTCGAGACGGGGAACAGCGGCGGCGACT
CGGACTCCAACGGGAAGGCTGGAGTACACGGAGAGGACGTGCTGCGGGTC
GAACTACACCAACAGCGATACGGAGGCGTCGTGCGTTGTAGCCCTCGAGA
CGGGGAACAGCGGCGGCGACTCGGACTCCAACGGGAAGACAACTATCGGG
GTGGGCTTGGCGGGAGGCGTTGCTGTGGCGGTGGTGCTGATCCTGCTGGC
CCTGTTCGTCGTGCACAAGAGGAAGAAGAAGAACCAGTTGCCGAAGCGGG
ACAGGTGAACAACTATCGGGGTGGGCTTGGCGGGAGGCGTTGCTGTGGCG
GTGGTGCTGATCCTGCTGGCCCTGTTCGTCGTGCACAAGAGGAAGAAGAA
GAACCAGTTGCCGAAGCGGGACAGGTGA
back to top