mRNA_S-dermatodea_contig13221.1919.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13221.1919.1
Unique NamemRNA_S-dermatodea_contig13221.1919.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13221.1919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13221contigS-dermatodea_contig13221:3871..5170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size906
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13221.1919.1prot_S-dermatodea_contig13221.1919.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13221 3892..4879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.733209-UTR-S-dermatodea_contig13221:3870..38911622924278.733209-UTR-S-dermatodea_contig13221:3870..3891Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13221 3871..3891 +
1694079146.0648737-UTR-S-dermatodea_contig13221:3870..38911694079146.0648737-UTR-S-dermatodea_contig13221:3870..3891Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13221 3871..3891 +
1622924278.766509-UTR-S-dermatodea_contig13221:4879..51701622924278.766509-UTR-S-dermatodea_contig13221:4879..5170Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13221 4880..5170 +
1694079146.0989783-UTR-S-dermatodea_contig13221:4879..51701694079146.0989783-UTR-S-dermatodea_contig13221:4879..5170Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13221 4880..5170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.7452812-CDS-S-dermatodea_contig13221:3891..39801622924278.7452812-CDS-S-dermatodea_contig13221:3891..3980Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13221 3892..3980 +
1694079146.0797024-CDS-S-dermatodea_contig13221:3891..39801694079146.0797024-CDS-S-dermatodea_contig13221:3891..3980Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13221 3892..3980 +
1622924278.756627-CDS-S-dermatodea_contig13221:4374..48791622924278.756627-CDS-S-dermatodea_contig13221:4374..4879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13221 4375..4879 +
1694079146.0892234-CDS-S-dermatodea_contig13221:4374..48791694079146.0892234-CDS-S-dermatodea_contig13221:4374..4879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13221 4375..4879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13221.1919.1

>prot_S-dermatodea_contig13221.1919.1 ID=prot_S-dermatodea_contig13221.1919.1|Name=mRNA_S-dermatodea_contig13221.1919.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=198bp
MPIHSFFETFLASLHEMPRWKKRDPELGESLKNGRALWNTLRNAFLRFLA
VIDYPFEYRCWLWGKYWQIDTSNGCVKLVSIYVTRKQLASSRPELAIDND
LHMILQKLSSLSNVFFGMRIQFVVGAGEKVGSSPAWMAPDNRLSERFVRS
KRGSLESGEGKNFEDANGAALAEFLQGGRSGEEKGIDCVDPASTSCR*
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mRNA from alignment at S-dermatodea_contig13221:3871..5170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13221.1919.1 ID=mRNA_S-dermatodea_contig13221.1919.1|Name=mRNA_S-dermatodea_contig13221.1919.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1300bp|location=Sequence derived from alignment at S-dermatodea_contig13221:3871..5170+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGAAGGCGTTCTGACCGGCATGCCCATCCATTCTTTCTTCGAGACCTT
TCTGGCATCTCTCCACGAGATGCCACGCTGGAAAAAGCGGGATCCAGAAC
TGGGCGAAAGGTACGAGTGGCCATATGACCCACAAATCACCACTGGTTGA
AGACTTACGTAACAGGTCTAGGCTCAGGAAGCCTGCGAGCACAGCGTGTT
CGCAAGTCCTTTGTGTATGCCTTGACGTTGCTGCTGTGGGTAGGATGTAG
GCTGCGGTCTTCCTGGACAGTGCCCGAGGACGCAAGCTGTAGTGTGTTAC
GCGTAGAAAACGAGACTTGTATGCGCTTCGATCAAGCCGGCAACAGGCTA
TATTGTCTTGCATCGCCGTGTTCACGTTTGCCTACGGTTTTCGATTCAGA
ATGTTCTTATTAATGGAGTATTTCGAGGTCCGGCATTTCGTGAACCGTCA
CACGTAATGGAACCGTTCCCACCTGCCTTTTTTACCCGGTACGTCGTACG
TCAGCCTCAAGAACGGGAGAGCCCTGTGGAACACACTGAGGAACGCCTTC
CTTAGGTTCCTTGCCGTCATCGACTATCCCTTCGAGTACCGGTGTTGGCT
GTGGGGCAAGTACTGGCAGATTGACACCTCTAACGGGTGCGTCAAGTTGG
TCTCTATCTACGTGACGAGGAAGCAGCTGGCATCGTCACGACCGGAGCTA
GCCATCGACAACGATCTGCATATGATCCTGCAAAAGTTAAGCTCACTATC
GAATGTATTTTTCGGTATGCGCATCCAGTTTGTGGTGGGAGCTGGGGAGA
AGGTCGGTAGCTCACCCGCGTGGATGGCACCCGATAACCGCCTCTCGGAG
CGATTCGTGAGATCGAAGCGGGGTTCGTTGGAAAGCGGAGAGGGGAAAAA
CTTCGAAGATGCCAACGGTGCGGCGCTTGCAGAATTCCTTCAGGGGGGGA
GGTCGGGAGAGGAGAAGGGTATCGACTGCGTCGACCCTGCGTCGACGTCA
TGCCGATGAAGGAGCTGAAGAAACTCTACAACGATGTCTTGGCGAGTGGC
ATTAGCATTGCAGTCAAGGTGGTATGTTGCGGTTGCGGTGTACATCCTTC
CGGAAGCCCCACAGGCTGGTGCCGTGTATCGATAGGGTTGTGCGGCCACA
TCTATGAAACGGAAAGCTTCGACACGCTCATTTCTACGATGTGTGCTTCT
CCTCGGGTAGCTCGTTGTTGCTCGCATTCCCCAGTACGGTGGTGCATATC
TTATTCATTAATACCGCTCTGTCCGCGCTTTCCTGTACGGTTTTTGAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13221:3871..5170+

>mRNA_S-dermatodea_contig13221.1919.1 ID=mRNA_S-dermatodea_contig13221.1919.1|Name=mRNA_S-dermatodea_contig13221.1919.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at S-dermatodea_contig13221:3871..5170+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCCATCCATTCTTTCTTCGAGACCTTTCTGGCATCTCTCCACGAGAT
GCCACGCTGGAAAAAGCGGGATCCAGAACTGGGCGAAAGATGCCCATCCA
TTCTTTCTTCGAGACCTTTCTGGCATCTCTCCACGAGATGCCACGCTGGA
AAAAGCGGGATCCAGAACTGGGCGAAAGCCTCAAGAACGGGAGAGCCCTG
TGGAACACACTGAGGAACGCCTTCCTTAGGTTCCTTGCCGTCATCGACTA
TCCCTTCGAGTACCGGTGTTGGCTGTGGGGCAAGTACTGGCAGATTGACA
CCTCTAACGGGTGCGTCAAGTTGGTCTCTATCTACGTGACGAGGAAGCAG
CTGGCATCGTCACGACCGGAGCTAGCCATCGACAACGATCTGCATATGAT
CCTGCAAAAGTTAAGCTCACTATCGAATGTATTTTTCGGTATGCGCATCC
AGTTTGTGGTGGGAGCTGGGGAGAAGGTCGGTAGCTCACCCGCGTGGATG
GCACCCGATAACCGCCTCTCGGAGCGATTCGTGAGATCGAAGCGGGGTTC
GTTGGAAAGCGGAGAGGGGAAAAACTTCGAAGATGCCAACGGTGCGGCGC
TTGCAGAATTCCTTCAGGGGGGGAGGTCGGGAGAGGAGAAGGGTATCGAC
TGCGTCGACCCTGCGTCGACGTCATGCCGATGACCTCAAGAACGGGAGAG
CCCTGTGGAACACACTGAGGAACGCCTTCCTTAGGTTCCTTGCCGTCATC
GACTATCCCTTCGAGTACCGGTGTTGGCTGTGGGGCAAGTACTGGCAGAT
TGACACCTCTAACGGGTGCGTCAAGTTGGTCTCTATCTACGTGACGAGGA
AGCAGCTGGCATCGTCACGACCGGAGCTAGCCATCGACAACGATCTGCAT
ATGATCCTGCAAAAGTTAAGCTCACTATCGAATGTATTTTTCGGTATGCG
CATCCAGTTTGTGGTGGGAGCTGGGGAGAAGGTCGGTAGCTCACCCGCGT
GGATGGCACCCGATAACCGCCTCTCGGAGCGATTCGTGAGATCGAAGCGG
GGTTCGTTGGAAAGCGGAGAGGGGAAAAACTTCGAAGATGCCAACGGTGC
GGCGCTTGCAGAATTCCTTCAGGGGGGGAGGTCGGGAGAGGAGAAGGGTA
TCGACTGCGTCGACCCTGCGTCGACGTCATGCCGATGA
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