mRNA_S-dermatodea_contig13219.1916.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13219.1916.1
Unique NamemRNA_S-dermatodea_contig13219.1916.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13219.1916.1 vs. uniprot
Match: D7FPN4_ECTSI (acidPPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.670e-19
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:   37 PRRSRRRRPWLRAAFVVLVAIEVAIFVVVDEFSPVFDFDIPSVTAAA-DGTT-VLGNNPDLMYPIKLSGSLCHPGELIACVASDASAGTLATVCC 315
            P+R RRR+PWLR  F V + +E  +   V+E+SPV+DF++ SVT  A DGTT V+G+NPDL +P+ L+G  C   ++ ACV  + +   L+TVCC
Sbjct:   46 PKR-RRRQPWLRGLFTVFLVVEALVLYAVNEYSPVYDFEVLSVTTTAEDGTTTVVGDNPDLSFPLSLAGEKCGVSDMAACVTEEPTPAALSTVCC 139
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13219.1916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPN4_ECTSI1.670e-1947.37acidPPc domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13219contigS-dermatodea_contig13219:339..3671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size319
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.4086864-CDS-S-dermatodea_contig13219:338..5271622924278.4086864-CDS-S-dermatodea_contig13219:338..527Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13219 339..527 +
1694079145.7837996-CDS-S-dermatodea_contig13219:338..5271694079145.7837996-CDS-S-dermatodea_contig13219:338..527Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13219 339..527 +
1622924278.4209454-CDS-S-dermatodea_contig13219:3543..36691622924278.4209454-CDS-S-dermatodea_contig13219:3543..3669Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13219 3544..3669 +
1694079145.794863-CDS-S-dermatodea_contig13219:3543..36691694079145.794863-CDS-S-dermatodea_contig13219:3543..3669Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13219 3544..3669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13219.1916.1prot_S-dermatodea_contig13219.1916.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13219 339..3669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13219.1916.1

>prot_S-dermatodea_contig13219.1916.1 ID=prot_S-dermatodea_contig13219.1916.1|Name=mRNA_S-dermatodea_contig13219.1916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
TINGEAYYYGDSPRRSRRRRPWLRAAFVVLVAIEVAIFVVVDEFSPVFDF
DIPSVTAAADGTTVLGNNPDLMYPIKLSGSLCHPGELIACVASDASAGTL
ATVCC
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mRNA from alignment at S-dermatodea_contig13219:339..3671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13219.1916.1 ID=mRNA_S-dermatodea_contig13219.1916.1|Name=mRNA_S-dermatodea_contig13219.1916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3333bp|location=Sequence derived from alignment at S-dermatodea_contig13219:339..3671+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAATCAATGGGGAGGCTTACTACTACGGAGATTCTCCGCGCAGGAGCAG
GCGGCGGCGGCCGTGGCTAAGGGCTGCGTTTGTGGTTTTGGTGGCGATTG
AGGTGGCCATTTTTGTTGTTGTGGACGAGTTCAGCCCGGTGTTTGACTTC
GACATCCCGTCGGTAACGGCTGCGGCGGACGGCACAACGGTAAGATTTTT
TGTCTTTTTTTTTCTTGTCTCTATAATGTCTTTTTTTTTAACAGTGCGTT
TGTTTACTGTAGTGTTCTATTTTATGTTTGTTTGCGTAACGGTTGTCAGA
CTCGATAAGGAGCATCGCGGGTGGTTGCGCTGACAGCCCTCCCTGTGGGT
CCCTGTGGGAGAGGGGATTTTTTTTTTTTTTTTTTTTTTTAACAGGTCCA
AGTTCCGAGGAATGACCCCTCATTTTCCTAGAGTTGGTATATGCCAACTC
CTTCTTCGTATGTACTATATAGGTAATTCCGTATGTCTTTTTTTCGAAAT
CTCGATTTCTCACATGACCAATACGAGCGGGATCGGCAACCATCACTATT
ATGGTGGGCCGGTACGTCGGTTGTAACTGTGATAATCAATCAATCAATCA
ATCAATCAATCAATAAAACCAATGTGTGGCTGCGAGGCGCGAGACGAGAC
ACCCCCACCCCCACCCCCACCTAAAGGAGGGAGCTGCTGTCTCGTAAAAT
GCTTCGTTCTCATGTCCTTGTGTGTTGTTGTGCTCTATGGACGGCTATTA
TAGTAGATGGCCACGGCTCTATGAAAATCCGGCTCTTTGAAGTGGGGAGC
GAGCGTGCTCTAAAATCAAGTTGTTTTGGCATCAAATGTAGCCCTCTTTT
AAATCGGTATGATTTGTGTTGCGCAGAGCGTATATATATAGCAATAATGT
GGGCATGGGTCACTCTAAAATCGCTATTAACAAACGAACAAAGAGCGGTA
TCATTTAACAAAAACGGGAGACTGACTATACTCGTGCGCTCTATGTATCT
ATCATAGGAGATGTTTTGTTCCTTGTTTTTTGCTGATGTGCACAACGAAA
GACTGAACAACTACTATAGAGCGACGGCGCGAGTGCACAAAATCCGAGAA
ATCGTCGGCGAGCTGCGTGCGGGAGTTTCGAACCGAACCCACTGCATTCG
CGATAAAACATCTAAGGTAGTAACCTGGGATAAGAGACGGAGGTGGTGAT
CCCTCGTGACCACAGACGGAAAAGCCGGTCTCTTTCTTTCTGATCATGTG
TGTTGAAAAATAACAAAATAAATACAGTTCTGTACGTACACTATATTAGG
TGAATGCTGAAACGAAGCCTTTTGGCGAGGAGGTTTTTTTAATAAAGAAA
AATAACACATAACGTGTACGCACAATCCATAACTCGTTGGGACAGGAGAA
GATAAGATAAGACAAGACCCGGGTAGACCTTGTGGTATACAAAACTGATA
AGATTCCCTGGGTTCATTGTGGACGCGCATAATATTGAGCCAGGTGTAGT
AGCGGCAGTCAGGCACACGGGTATTTTTTGCACGACGCCCAGCTGGCCCA
TCCGCCCGCTCGCCCGCCCGTACCTCGGTTTGCGGCGTAATTCCGGACGG
ACTCTCTCGCACGAGCTCCCCCGGCAGCCCGCTCTAACATTTCCCGCTCC
TCGCTACTCGCGCGCGACACTACTGTACTTGCGATTTATTACGGAGGTAC
ACTATAATCAAGTAATCAGGACTAAATATCACAACCATGAATACCCTGCT
ATTCTGACCGAAAACATCATACCATACCCAAACAACAGCAAAAATCTCGT
GAAGAAAGAAATCCACAATATATGGCCTTAAGGCGGCCGGTTCATATACA
CAAGCAGAAAAAATCAATTATATAGCAAAAATAAAAATAAACACGAAAAA
CAGCCAAAATGAATTAAAATTGATTTGGGGCAATTTTAATCGAAATGAAC
AACCGGAAAAAAAAACGTGCTTGTGTTCATTTCAATTAAAATAAAATGCG
GCAAAAATCGATTAAAATTGATTTTGTTTTGCAATTAAAATTGTTTTTTT
CTGTTCATATGAACCGGCCCTTGTACAAGAATATTGACCATGAAATCTCG
GTAATTCCAGCCTATTCTTGTTTATCTAGGATGAGACTTGTATGATAGCG
AATTTGACCCTGATAAAGTTAACTGTGGTATACTTCCCCGCAATAGTCGT
GTTGGCGTGGTGGCTACTCTATATTTTCCGGTCTCGCGTATATACCGTGG
GTGCCCCGAGTTGTACGCTGTGGATGCGTCGTCGCTCGGGTTATTTCGCC
CGTGGCGGTGTTGCAGGTTGTTGGTTCGGTGGTGGGTTTCAAAAGGTTTC
AAAAGCCTCGTTGCTTGGGTGTTTGGGTGGGTTTTTGTCGCATCAGTTAG
TTACTCGTTTGTTTGCGGTTTCATGCCGCGGGCCATGGGGTTCGGCACGC
CCTGTCCGTCGCCCAGTCAGTATATATGATATATGTATACTTCGTATATA
TTATAGTTACTTGAAACATAACATGTCTGTCTATTCTCCCTGCGGCTACG
TTCGAGTGCTTGCTTACCATCCCACTTGCGTCCCCCCACGACCACGACGA
CCTTTTCTACGCCTTCCGGCCTGGCCTGCCTGCCTACACCCTACGGGATA
GGCTTAGGAGATATAGCGCTAAGTCATATTGATAAGTCGAAAGGGTTTCG
TTGTAAATGGGACACATTTGATGACGGAAGAAGTTGCAGACACGACTATG
ATATTGCTTCGCAGATAAATCGTGTTCACAAGCGGCACTTCTCCGCGCCC
AGTGACCCTGCACTTGTTCTAATCCTTGGCCTTGGCGACTCGCTCGCTGA
AATTAAGCCCTTGATTGATTTATTGATTTATTGATTTATTGATTTATTGA
TTTATTGATTTATTGATTTATTGTTTTATTGATTGATTGATTGATTTGCA
CACGTATCATGGCCAATCGGCTTACATCCGACTCGACTTGTGGTCAGATG
CTTTCGCAAAGAGGTGCCAGGGAGAAAATAACTGTAATAATTAGAACAAT
ACTCGTACAATACCACACAATACCGTTTTGTCGTGTGAGACAAGTGTTAC
ACAGAGCTATTCTGCTACGCACACGCGATGAAGCGACCAAAAACAATAAC
GAACGTGTTTTTTTTTCCCCTTTTTTTTTTTTTTTTCGCCACGCGCAAAA
AACAGGTGCTAGGGAACAACCCGGACCTGATGTACCCGATCAAGCTATCG
GGGTCCCTCTGCCATCCGGGGGAGCTTATCGCTTGCGTCGCGAGCGACGC
CTCGGCGGGCACGCTCGCGACCGTCTGCTGCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13219:339..3671+

>mRNA_S-dermatodea_contig13219.1916.1 ID=mRNA_S-dermatodea_contig13219.1916.1|Name=mRNA_S-dermatodea_contig13219.1916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig13219:339..3671+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAATCAATGGGGAGGCTTACTACTACGGAGATTCTCCGCGCAGGAGCAG
GCGGCGGCGGCCGTGGCTAAGGGCTGCGTTTGTGGTTTTGGTGGCGATTG
AGGTGGCCATTTTTGTTGTTGTGGACGAGTTCAGCCCGGTGTTTGACTTC
GACATCCCGTCGGTAACGGCTGCGGCGGACGGCACAACGACAATCAATGG
GGAGGCTTACTACTACGGAGATTCTCCGCGCAGGAGCAGGCGGCGGCGGC
CGTGGCTAAGGGCTGCGTTTGTGGTTTTGGTGGCGATTGAGGTGGCCATT
TTTGTTGTTGTGGACGAGTTCAGCCCGGTGTTTGACTTCGACATCCCGTC
GGTAACGGCTGCGGCGGACGGCACAACGGTGCTAGGGAACAACCCGGACC
TGATGTACCCGATCAAGCTATCGGGGTCCCTCTGCCATCCGGGGGAGCTT
ATCGCTTGCGTCGCGAGCGACGCCTCGGCGGGCACGCTCGCGACCGTCTG
CTGCGTGCTAGGGAACAACCCGGACCTGATGTACCCGATCAAGCTATCGG
GGTCCCTCTGCCATCCGGGGGAGCTTATCGCTTGCGTCGCGAGCGACGCC
TCGGCGGGCACGCTCGCGACCGTCTGCTGC
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