mRNA_S-dermatodea_contig13206.1911.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13206.1911.1
Unique NamemRNA_S-dermatodea_contig13206.1911.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13206.1911.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 5.320e-34
Identity = 84/171 (49.12%), Postives = 101/171 (59.06%), Query Frame = 3 
Query:    6 LAVVRFRTERFGGHVAMHCHVNSHSDTGVMAVGNIVEGQGPNEDPSALAAGTCGTAGVDGFGYNLSVDEAEDRSMTPSPSSSYGTPQPTTVEERDAADGAGIDETDSGSSDSDNSWWVAAVAGAGVGLGVILIGAVLFLKFGKKTRPSHAGAKKLSTVESMDG---ETKAE 509
            +AVVRFRTER+GGHVAMHCHVNSHSDTGVMAV +I  G+GPNEDP ALAAGTCG  GV G+GYNLS D+  +          Y      T EER A  G           D +++WWVA          ++L G +L  KFGK  R + AGA+  +  +   G   ETKAE
Sbjct: 1054 VAVVRFRTERYGGHVAMHCHVNSHSDTGVMAVADIDGGEGPNEDPIALAAGTCGIEGVAGYGYNLSADDTAETDED-----GYDDDASATAEER-ATVGXXXXXXXXXXXDPEDTWWVAXXXXXXXXXXILLCGGLLMSKFGK--RDAVAGARAAAPAKDSGGAADETKAE 1216
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13206.1911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE5.320e-3449.12PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13206contigS-dermatodea_contig13206:4849..6211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionMCO is implicated in celullar iron transport playing also role in the copper resistance
Ec32 orthologEc-14_000430.1
Hectar predicted targeting categoryother localisation
Exons2
Model size529
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13206.1911.1prot_S-dermatodea_contig13206.1911.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13206 4860..6158 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.0459368-UTR-S-dermatodea_contig13206:4848..48591622924278.0459368-UTR-S-dermatodea_contig13206:4848..4859Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13206 4849..4859 -
1694079145.5127716-UTR-S-dermatodea_contig13206:4848..48591694079145.5127716-UTR-S-dermatodea_contig13206:4848..4859Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13206 4849..4859 -
1622924278.0797188-UTR-S-dermatodea_contig13206:6158..62111622924278.0797188-UTR-S-dermatodea_contig13206:6158..6211Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13206 6159..6211 -
1694079145.5609994-UTR-S-dermatodea_contig13206:6158..62111694079145.5609994-UTR-S-dermatodea_contig13206:6158..6211Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13206 6159..6211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.0576677-CDS-S-dermatodea_contig13206:4859..52111622924278.0576677-CDS-S-dermatodea_contig13206:4859..5211Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13206 4860..5211 -
1694079145.524238-CDS-S-dermatodea_contig13206:4859..52111694079145.524238-CDS-S-dermatodea_contig13206:4859..5211Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13206 4860..5211 -
1622924278.0689268-CDS-S-dermatodea_contig13206:6045..61581622924278.0689268-CDS-S-dermatodea_contig13206:6045..6158Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13206 6046..6158 -
1694079145.5433903-CDS-S-dermatodea_contig13206:6045..61581694079145.5433903-CDS-S-dermatodea_contig13206:6045..6158Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13206 6046..6158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13206.1911.1

>prot_S-dermatodea_contig13206.1911.1 ID=prot_S-dermatodea_contig13206.1911.1|Name=mRNA_S-dermatodea_contig13206.1911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=155bp
MHCHVNSHSDTGVMAVGNIVEGQGPNEDPSALAAGTCGTAGVDGFGYNLS
VDEAEDRSMTPSPSSSYGTPQPTTVEERDAADGAGIDETDSGSSDSDNSW
WVAAVAGAGVGLGVILIGAVLFLKFGKKTRPSHAGAKKLSTVESMDGETK
AEVA*
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mRNA from alignment at S-dermatodea_contig13206:4849..6211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13206.1911.1 ID=mRNA_S-dermatodea_contig13206.1911.1|Name=mRNA_S-dermatodea_contig13206.1911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1363bp|location=Sequence derived from alignment at S-dermatodea_contig13206:4849..6211- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGACTGGCGGTCGTTCGTTTCCGCACAGAGCGGTTCGGCGGACACGTT
GCCATGCACTGCCACGTTAACTCCCACAGCGACACGGGCGTGATGGCCGT
CGGTAACATCGTGGAGGGACAGGGACCAAACGAAGACCCCAGCGCCTTGG
CCGCTGGCACTTGCGGGTGAGACCGCGGAAGTGGGGGGGGGGTGGGGGTG
GGGGGTCGATCCGGTCGCGACCCGCACGCACTCTAATCTATGTTGGGTCA
CATCGTTATAATATGATATATGATGTAGCTGTCGCTGTCGCTGAGCGTGG
TCGGTTTATCGAATTATACCTTTCGTTCCTTGTCCGATTTTTATAATTGT
ATATTATTATTACCTGGATATTTTATTTGTTTGTATTGATATTGTGCAGT
ATTACTATATAATATTATAGTGTGCAGTATATATTCGTGACGGGTGCACG
CACAAGTGCACCCCACCGTGCATACAAGCTATAGCTATTCTTAGGGAGGA
AGGCAGGTTTATCATATCACCACTTTTACACCGTATAGTACAGTATATAC
TATATATCATATAGTAGTGTATACTATGTAATAATAGTACAGTAGCCACC
ATGAGGTCACAGTTGGATGTGAACTACGGTGAGGGCATAGAGATAGATGG
ATAGATAGATAGATAGATAGATACATGGCCTAACCCCGAAGATAGGGTCA
AGGATGAGTCCCTTAAGCCAAAAGGGTCAACGAGCCAAATATCGTTATCT
TCCCGTTCTCGCATCCGTCAGAGCTTACCGAACTCAGCTATCTATCCTGT
GGGAACAATGCTCCGGCTCCGTCCCCTAGAGGACGCGTGGTCAATGCTTT
ACCAGCTAAGGCATGCCAAACTTGAGTATCGTGGTCAACGGTCTACCAGC
TAAGGCATGCAAAACATCAGTACCAACATTAGTACCCACCCACCCCACCC
CACCCCCCCTCCCCTCCTCCTTTTCTGTGCATCGCCCACCCAATTCTCAG
GACTGCGGGAGTAGACGGCTTCGGCTACAACCTCAGCGTAGACGAGGCCG
AGGATCGTTCCATGACCCCTTCCCCTTCCTCCTCTTATGGCACCCCCCAG
CCCACCACGGTCGAGGAACGCGACGCCGCGGACGGAGCGGGTATCGATGA
GACAGACAGCGGTTCGAGCGATTCAGACAACTCCTGGTGGGTCGCCGCGG
TGGCCGGTGCAGGGGTCGGGCTGGGCGTGATCCTCATAGGGGCAGTTCTG
TTCCTCAAGTTCGGCAAGAAGACTCGGCCCTCGCACGCAGGCGCGAAGAA
ACTTTCCACCGTGGAGTCCATGGATGGCGAGACTAAGGCGGAGGTGGCCT
AACCGATCGCCGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13206:4849..6211-

>mRNA_S-dermatodea_contig13206.1911.1 ID=mRNA_S-dermatodea_contig13206.1911.1|Name=mRNA_S-dermatodea_contig13206.1911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at S-dermatodea_contig13206:4849..6211- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACTGCCACGTTAACTCCCACAGCGACACGGGCGTGATGGCCGTCGG
TAACATCGTGGAGGGACAGGGACCAAACGAAGACCCCAGCGCCTTGGCCG
CTGGCACTTGCGGATGCACTGCCACGTTAACTCCCACAGCGACACGGGCG
TGATGGCCGTCGGTAACATCGTGGAGGGACAGGGACCAAACGAAGACCCC
AGCGCCTTGGCCGCTGGCACTTGCGGGACTGCGGGAGTAGACGGCTTCGG
CTACAACCTCAGCGTAGACGAGGCCGAGGATCGTTCCATGACCCCTTCCC
CTTCCTCCTCTTATGGCACCCCCCAGCCCACCACGGTCGAGGAACGCGAC
GCCGCGGACGGAGCGGGTATCGATGAGACAGACAGCGGTTCGAGCGATTC
AGACAACTCCTGGTGGGTCGCCGCGGTGGCCGGTGCAGGGGTCGGGCTGG
GCGTGATCCTCATAGGGGCAGTTCTGTTCCTCAAGTTCGGCAAGAAGACT
CGGCCCTCGCACGCAGGCGCGAAGAAACTTTCCACCGTGGAGTCCATGGA
TGGCGAGACTAAGGCGGAGGTGGCCTAAGACTGCGGGAGTAGACGGCTTC
GGCTACAACCTCAGCGTAGACGAGGCCGAGGATCGTTCCATGACCCCTTC
CCCTTCCTCCTCTTATGGCACCCCCCAGCCCACCACGGTCGAGGAACGCG
ACGCCGCGGACGGAGCGGGTATCGATGAGACAGACAGCGGTTCGAGCGAT
TCAGACAACTCCTGGTGGGTCGCCGCGGTGGCCGGTGCAGGGGTCGGGCT
GGGCGTGATCCTCATAGGGGCAGTTCTGTTCCTCAAGTTCGGCAAGAAGA
CTCGGCCCTCGCACGCAGGCGCGAAGAAACTTTCCACCGTGGAGTCCATG
GATGGCGAGACTAAGGCGGAGGTGGCCTAA
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