prot_S-dermatodea_contig13169.1896.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig13169.1896.1
Unique Nameprot_S-dermatodea_contig13169.1896.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length289
Homology
BLAST of mRNA_S-dermatodea_contig13169.1896.1 vs. uniprot
Match: A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.710e-39
Identity = 77/107 (71.96%), Postives = 89/107 (83.18%), Query Frame = 0
Query:    1 CIVQCPELFGEGVKKLWRWKPAAATNAADDALDPGIALEAFMKGLNLRLGLSEGSAGVRVSYLDMEVGGGDGEYVSLDVEAWEDFLESRFKRLSVTIDRTTTHKEQD 107
            CIVQC +LFGEGVKKLWRWKPA A ++ D+A DP +A+ AFMKGL++RLGL E + GVRVSYLDMEVGGG+GEYVSLDVEAW DFLESRFKRL VT+D   T +  D
Sbjct:  681 CIVQCSQLFGEGVKKLWRWKPAPAASS-DEAADPSVAVSAFMKGLSVRLGLGEDNPGVRVSYLDMEVGGGEGEYVSLDVEAWGDFLESRFKRLLVTVDPLKTGQSDD 786          
BLAST of mRNA_S-dermatodea_contig13169.1896.1 vs. uniprot
Match: D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 6.850e-39
Identity = 84/134 (62.69%), Postives = 96/134 (71.64%), Query Frame = 0
Query:    1 CIVQCPELFGEGVKKLWRWKPAAATNAADDALDPGIALEAFMKGLNLRLGLSEGSAGVRVSYLDMEVGGGDGEYVSLDVEAWEDFLESRFKRLSVTID------RTTTHKEQDKDNDREVTASAEEGVDVSGEA 128
            CIVQC +LFGEGVKKLWRWKPA A +  DDA DP +A+ AFMKGL++RLGL E + GVRVSYLDMEVG G+GEYVSLDVEAW DFLESRFKRL VT+D      R      Q    D E T+  +EG   +G A
Sbjct:  706 CIVQCSQLFGEGVKKLWRWKPAPAASN-DDAADPSVAVSAFMKGLSVRLGLGEDNPGVRVSYLDMEVGDGEGEYVSLDVEAWGDFLESRFKRLLVTVDPPEPGQRADARGGQRPPEDGEATSQGKEGKGSAGSA 838          
BLAST of mRNA_S-dermatodea_contig13169.1896.1 vs. uniprot
Match: A0A835YQM7_9STRA (VPS9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.180e-7
Identity = 48/122 (39.34%), Postives = 56/122 (45.90%), Query Frame = 0
Query:    1 CIVQCPELFGEGVKK------------------LWRWKPAAATNAADDALDPGIALEAFMKGLNLRLGLSEGSAGVR-------VSYLDMEVGGGDGEYVSLDVEAWEDFLESRFKRLSVTI 97
            CIVQC  +FG GVKK                  LWRWKP        D L+    L  FM GL  RL L    A  +       ++YLD E    + E VSLD+EAW DFL  R KRL V +
Sbjct:  636 CIVQCAAIFGLGVKKFQSIVWRATAVFGPGIKELWRWKPGCD----QDELEGPKGLSLFMLGLARRLALGGDDAEAKEAVERLTLTYLDPE----EREQVSLDLEAWPDFLSLRSKRLVVEM 749          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13169.1896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KV84_9PHAE2.710e-3971.96VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJN4_ECTSI6.850e-3962.69VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YQM7_9STRA1.180e-739.34VPS9 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13169contigS-dermatodea_contig13169:4001..5961 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13169.1896.1mRNA_S-dermatodea_contig13169.1896.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig13169 4001..5963 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig13169.1896.1 ID=prot_S-dermatodea_contig13169.1896.1|Name=mRNA_S-dermatodea_contig13169.1896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=289bp
CIVQCPELFGEGVKKLWRWKPAAATNAADDALDPGIALEAFMKGLNLRLG
LSEGSAGVRVSYLDMEVGGGDGEYVSLDVEAWEDFLESRFKRLSVTIDRT
TTHKEQDKDNDREVTASAEEGVDVSGEAEGAREGRSDEKQDEHERQIDGD
DAGRVGDARSFSGVPSLEVTPALREDEPSLENVKAASAPGLVTEHSEKTP
SVEGGSITGDEGDTSVGGEASDTSAADPEAGFAEALQITSNVKSVDGPDE
GASVDVTGVADVRAVPQEDAGGHKSGVEEGEGSGLAISS
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