mRNA_S-dermatodea_contig13169.1896.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13169.1896.1
Unique NamemRNA_S-dermatodea_contig13169.1896.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13169.1896.1 vs. uniprot
Match: A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.710e-39
Identity = 77/107 (71.96%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 CIVQCPELFGEGVKKLWRWKPAAATNAADDALDPGIALEAFMKGLNLRLGLSEGSAGVRVSYLDMEVGGGDGEYVSLDVEAWEDFLESRFKRLSVTIDRTTTHKEQD 321
            CIVQC +LFGEGVKKLWRWKPA A ++ D+A DP +A+ AFMKGL++RLGL E + GVRVSYLDMEVGGG+GEYVSLDVEAW DFLESRFKRL VT+D   T +  D
Sbjct:  681 CIVQCSQLFGEGVKKLWRWKPAPAASS-DEAADPSVAVSAFMKGLSVRLGLGEDNPGVRVSYLDMEVGGGEGEYVSLDVEAWGDFLESRFKRLLVTVDPLKTGQSDD 786
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BLAST of mRNA_S-dermatodea_contig13169.1896.1 vs. uniprot
Match: D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 6.850e-39
Identity = 84/134 (62.69%), Postives = 96/134 (71.64%), Query Frame = 1 
Query:    1 CIVQCPELFGEGVKKLWRWKPAAATNAADDALDPGIALEAFMKGLNLRLGLSEGSAGVRVSYLDMEVGGGDGEYVSLDVEAWEDFLESRFKRLSVTID------RTTTHKEQDKDNDREVTASAEEGVDVSGEA 384
            CIVQC +LFGEGVKKLWRWKPA A +  DDA DP +A+ AFMKGL++RLGL E + GVRVSYLDMEVG G+GEYVSLDVEAW DFLESRFKRL VT+D      R      Q    D E T+  +EG   +G A
Sbjct:  706 CIVQCSQLFGEGVKKLWRWKPAPAASN-DDAADPSVAVSAFMKGLSVRLGLGEDNPGVRVSYLDMEVGDGEGEYVSLDVEAWGDFLESRFKRLLVTVDPPEPGQRADARGGQRPPEDGEATSQGKEGKGSAGSA 838
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BLAST of mRNA_S-dermatodea_contig13169.1896.1 vs. uniprot
Match: A0A835YQM7_9STRA (VPS9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.180e-7
Identity = 48/122 (39.34%), Postives = 56/122 (45.90%), Query Frame = 1 
Query:    1 CIVQCPELFGEGVKK------------------LWRWKPAAATNAADDALDPGIALEAFMKGLNLRLGLSEGSAGVR-------VSYLDMEVGGGDGEYVSLDVEAWEDFLESRFKRLSVTI 291
            CIVQC  +FG GVKK                  LWRWKP        D L+    L  FM GL  RL L    A  +       ++YLD E    + E VSLD+EAW DFL  R KRL V +
Sbjct:  636 CIVQCAAIFGLGVKKFQSIVWRATAVFGPGIKELWRWKPGCD----QDELEGPKGLSLFMLGLARRLALGGDDAEAKEAVERLTLTYLDPE----EREQVSLDLEAWPDFLSLRSKRLVVEM 749
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13169.1896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KV84_9PHAE2.710e-3971.96VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJN4_ECTSI6.850e-3962.69VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YQM7_9STRA1.180e-739.34VPS9 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13169contigS-dermatodea_contig13169:4001..5963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue1.9e-36
Seed eggNOG ortholog2880.D7FJN4
Preferred nameMIB1
KEGG koko:K10645
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0666@1,KOG2319@2759,KOG4177@2759
EC2.3.2.27
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size871
Cds size867
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13169.1896.1prot_S-dermatodea_contig13169.1896.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13169 4001..5961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924276.0405226-CDS-S-dermatodea_contig13169:4000..40361622924276.0405226-CDS-S-dermatodea_contig13169:4000..4036Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13169 4001..4036 +
1694079143.8723307-CDS-S-dermatodea_contig13169:4000..40361694079143.8723307-CDS-S-dermatodea_contig13169:4000..4036Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13169 4001..4036 +
1622924276.0543692-CDS-S-dermatodea_contig13169:4586..47321622924276.0543692-CDS-S-dermatodea_contig13169:4586..4732Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13169 4587..4732 +
1694079143.8893917-CDS-S-dermatodea_contig13169:4586..47321694079143.8893917-CDS-S-dermatodea_contig13169:4586..4732Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13169 4587..4732 +
1622924276.0686665-CDS-S-dermatodea_contig13169:5276..59611622924276.0686665-CDS-S-dermatodea_contig13169:5276..5961Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13169 5277..5961 +
1694079143.8974562-CDS-S-dermatodea_contig13169:5276..59611694079143.8974562-CDS-S-dermatodea_contig13169:5276..5961Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13169 5277..5961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13169.1896.1

>prot_S-dermatodea_contig13169.1896.1 ID=prot_S-dermatodea_contig13169.1896.1|Name=mRNA_S-dermatodea_contig13169.1896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=289bp
CIVQCPELFGEGVKKLWRWKPAAATNAADDALDPGIALEAFMKGLNLRLG
LSEGSAGVRVSYLDMEVGGGDGEYVSLDVEAWEDFLESRFKRLSVTIDRT
TTHKEQDKDNDREVTASAEEGVDVSGEAEGAREGRSDEKQDEHERQIDGD
DAGRVGDARSFSGVPSLEVTPALREDEPSLENVKAASAPGLVTEHSEKTP
SVEGGSITGDEGDTSVGGEASDTSAADPEAGFAEALQITSNVKSVDGPDE
GASVDVTGVADVRAVPQEDAGGHKSGVEEGEGSGLAISS
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mRNA from alignment at S-dermatodea_contig13169:4001..5963+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13169.1896.1 ID=mRNA_S-dermatodea_contig13169.1896.1|Name=mRNA_S-dermatodea_contig13169.1896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1963bp|location=Sequence derived from alignment at S-dermatodea_contig13169:4001..5963+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTATCGTGCAGTGTCCTGAGCTGTTCGGAGAAGGGGTAAGCGCCGATCT
ACAAGTATCATGGTCCAAGTGCATGCTGATTTTTCAGGGTGACCTTCCGG
TAGTTTTAACCTTTCGGGAAAATTTGTTTTCTGCGTGACAATTGAGTTTT
GGATCCTATCCGTCCAGTCACAAGTCAGTCGGATTTGTTAACTTTTCGGC
GGGTACATCCTGTAGAGCAGTGCTCCCATGTGCCAGGTGGGTTGAAAGAG
GTACAGTGCTTTGTTCTCACAATAGTATGTTGTTTCCAGGTACAGAGCTA
CTCGATTGTGAAAACCCTGCCGAGGACTATTTTTACATGCCTTTCTCCTC
TTTGCGAGCGTGGTACATACGCAGTGCATGCCTGATTTGTCACGGAGGGG
ACCAGGCGAATTCCAACAACTTCATGCAGGGTATCTATCGTATTGGCGTA
CGTTCCAGTAACACGACCTATGCTTGAATCGATAGTTGATATGTCCCCAC
GCGAACGACAGAGCGATAGTTCAGGAAGGCCCTTCAAGCGTCGTACCATC
AACCATGGAAATTCAATTCCCTCTTTGCCCTCTCAGGTGAAGAAGCTCTG
GCGCTGGAAGCCTGCCGCAGCGACGAACGCAGCTGACGATGCCCTGGACC
CCGGCATTGCCTTGGAGGCGTTTATGAAGGGTCTCAACTTGCGTTTGGGC
TTGAGCGAGGGAAGCGCTGGCGTAAGGGTCAGGTATGTACCACACACACG
TTCCTGTACGTGTGGTGTCGTCGATAGCGAATTTCCTATCTACGGACACA
CTGCTTTTGCCAAGACAGGACCCCACTTAGCCTTGCGGCCTTATGCTGCT
GCCATCTTTGATGGCTTCTTAAGTCCCAGTGGATTTCTTGTTGTAACAAG
GCGTAGCCCACTATTCGCGGGTTGTCCATGATATCGCTTAAGACCGTAGC
ATGTTTCGACGAAAAGAAAGAGATTGAGCATGCATACCGTGTCCGACTGG
TTCGGCGCGCCATTGGTGTAATGGAACACGAAATAGGGCCACATCGATGG
CCGCGAAGCCCACCACGCGATGTAACTTCCTAAATCGCACATGCCCGACA
CTGGGGGGCTTTTGAAGTGACGCTGTGGGGCTGTATTGAGGTATGCATTC
AAGGTTTTATTTCGTGCGCTTCTACGAGTGTGTTGTTGCACATGAGACAA
TTGCCCGTCGCCAAGTGATGTTTCAACCCGTGGCTTCGCCCTCCGACACC
CGCTATGTCGTCCTTGGTTTGCTCAGCTATCTCGACATGGAGGTTGGTGG
CGGGGATGGAGAATATGTTTCCCTCGACGTGGAGGCGTGGGAAGACTTCC
TCGAAAGCCGCTTCAAGCGCCTATCCGTGACAATCGACAGAACCACCACG
CACAAGGAGCAAGACAAGGACAATGACAGAGAAGTGACCGCTTCCGCAGA
GGAAGGAGTGGATGTTAGCGGAGAGGCGGAAGGAGCCAGGGAAGGGCGGA
GCGACGAAAAGCAAGACGAACATGAGCGCCAGATTGATGGCGATGACGCA
GGACGCGTTGGTGATGCTCGCAGCTTTAGCGGCGTGCCATCGCTAGAGGT
AACGCCGGCACTTCGGGAGGACGAGCCGTCGCTGGAAAACGTGAAGGCTG
CTTCGGCCCCCGGTTTGGTTACGGAACACTCGGAGAAAACGCCATCGGTG
GAAGGGGGGTCGATCACCGGTGATGAGGGCGATACCAGCGTTGGAGGTGA
AGCATCAGACACGAGCGCTGCGGACCCCGAGGCGGGTTTTGCTGAAGCGC
TGCAGATCACCTCGAACGTGAAGTCGGTGGATGGGCCTGACGAGGGTGCT
AGTGTTGATGTCACGGGGGTGGCCGATGTCCGCGCTGTTCCACAGGAAGA
TGCCGGAGGGCACAAGAGCGGGGTGGAGGAAGGGGAGGGTAGCGGCCTAG
CGATTTCCTCTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13169:4001..5963+

>mRNA_S-dermatodea_contig13169.1896.1 ID=mRNA_S-dermatodea_contig13169.1896.1|Name=mRNA_S-dermatodea_contig13169.1896.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at S-dermatodea_contig13169:4001..5963+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTATCGTGCAGTGTCCTGAGCTGTTCGGAGAAGGGTGTATCGTGCAGTG
TCCTGAGCTGTTCGGAGAAGGGGTGAAGAAGCTCTGGCGCTGGAAGCCTG
CCGCAGCGACGAACGCAGCTGACGATGCCCTGGACCCCGGCATTGCCTTG
GAGGCGTTTATGAAGGGTCTCAACTTGCGTTTGGGCTTGAGCGAGGGAAG
CGCTGGCGTAAGGGTCAGGTGAAGAAGCTCTGGCGCTGGAAGCCTGCCGC
AGCGACGAACGCAGCTGACGATGCCCTGGACCCCGGCATTGCCTTGGAGG
CGTTTATGAAGGGTCTCAACTTGCGTTTGGGCTTGAGCGAGGGAAGCGCT
GGCGTAAGGGTCAGCTATCTCGACATGGAGGTTGGTGGCGGGGATGGAGA
ATATGTTTCCCTCGACGTGGAGGCGTGGGAAGACTTCCTCGAAAGCCGCT
TCAAGCGCCTATCCGTGACAATCGACAGAACCACCACGCACAAGGAGCAA
GACAAGGACAATGACAGAGAAGTGACCGCTTCCGCAGAGGAAGGAGTGGA
TGTTAGCGGAGAGGCGGAAGGAGCCAGGGAAGGGCGGAGCGACGAAAAGC
AAGACGAACATGAGCGCCAGATTGATGGCGATGACGCAGGACGCGTTGGT
GATGCTCGCAGCTTTAGCGGCGTGCCATCGCTAGAGGTAACGCCGGCACT
TCGGGAGGACGAGCCGTCGCTGGAAAACGTGAAGGCTGCTTCGGCCCCCG
GTTTGGTTACGGAACACTCGGAGAAAACGCCATCGGTGGAAGGGGGGTCG
ATCACCGGTGATGAGGGCGATACCAGCGTTGGAGGTGAAGCATCAGACAC
GAGCGCTGCGGACCCCGAGGCGGGTTTTGCTGAAGCGCTGCAGATCACCT
CGAACGTGAAGTCGGTGGATGGGCCTGACGAGGGTGCTAGTGTTGATGTC
ACGGGGGTGGCCGATGTCCGCGCTGTTCCACAGGAAGATGCCGGAGGGCA
CAAGAGCGGGGTGGAGGAAGGGGAGGGTAGCGGCCTAGCGATTTCCTCTC
TATCTCGACATGGAGGTTGGTGGCGGGGATGGAGAATATGTTTCCCTCGA
CGTGGAGGCGTGGGAAGACTTCCTCGAAAGCCGCTTCAAGCGCCTATCCG
TGACAATCGACAGAACCACCACGCACAAGGAGCAAGACAAGGACAATGAC
AGAGAAGTGACCGCTTCCGCAGAGGAAGGAGTGGATGTTAGCGGAGAGGC
GGAAGGAGCCAGGGAAGGGCGGAGCGACGAAAAGCAAGACGAACATGAGC
GCCAGATTGATGGCGATGACGCAGGACGCGTTGGTGATGCTCGCAGCTTT
AGCGGCGTGCCATCGCTAGAGGTAACGCCGGCACTTCGGGAGGACGAGCC
GTCGCTGGAAAACGTGAAGGCTGCTTCGGCCCCCGGTTTGGTTACGGAAC
ACTCGGAGAAAACGCCATCGGTGGAAGGGGGGTCGATCACCGGTGATGAG
GGCGATACCAGCGTTGGAGGTGAAGCATCAGACACGAGCGCTGCGGACCC
CGAGGCGGGTTTTGCTGAAGCGCTGCAGATCACCTCGAACGTGAAGTCGG
TGGATGGGCCTGACGAGGGTGCTAGTGTTGATGTCACGGGGGTGGCCGAT
GTCCGCGCTGTTCCACAGGAAGATGCCGGAGGGCACAAGAGCGGGGTGGA
GGAAGGGGAGGGTAGCGGCCTAGCGATTTCCTCT
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