mRNA_S-dermatodea_contig13164.1894.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13164.1894.1
Unique NamemRNA_S-dermatodea_contig13164.1894.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13164.1894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13164contigS-dermatodea_contig13164:4229..6226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size337
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924275.9618053-CDS-S-dermatodea_contig13164:4229..43821622924275.9618053-CDS-S-dermatodea_contig13164:4229..4382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 4230..4382 -
1694079143.8396041-CDS-S-dermatodea_contig13164:4229..43821694079143.8396041-CDS-S-dermatodea_contig13164:4229..4382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 4230..4382 -
1622924275.9714885-CDS-S-dermatodea_contig13164:6043..62261622924275.9714885-CDS-S-dermatodea_contig13164:6043..6226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 6044..6226 -
1694079143.8479311-CDS-S-dermatodea_contig13164:6043..62261694079143.8479311-CDS-S-dermatodea_contig13164:6043..6226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 6044..6226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13164.1894.1prot_S-dermatodea_contig13164.1894.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13164 4230..6226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13164.1894.1

>prot_S-dermatodea_contig13164.1894.1 ID=prot_S-dermatodea_contig13164.1894.1|Name=mRNA_S-dermatodea_contig13164.1894.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
RRCEQGRAKGNFGFCCSSFAVATMSSSSDSETMDVPGFFEVKGRSGDPTT
EELHSRVSKPKRFNNGQAYGLRGRRAGDASTQPLSALAQGFASPASALPE
TETHTVVRAGAV
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mRNA from alignment at S-dermatodea_contig13164:4229..6226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13164.1894.1 ID=mRNA_S-dermatodea_contig13164.1894.1|Name=mRNA_S-dermatodea_contig13164.1894.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1998bp|location=Sequence derived from alignment at S-dermatodea_contig13164:4229..6226- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGAGGTGTGAGCAAGGTAGGGCCAAGGGGAACTTCGGATTTTGCTGCTC
TAGCTTTGCTGTGGCCACTATGTCGTCTTCTTCCGACTCGGAGACTATGG
ACGTACCGGGCTTCTTCGAGGTGAAGGGTCGCAGCGGCGATCCCACGACT
GAGGAGCTGCACTCGAGAGTCTCGAAGCCTAAGGTGTGTCGTGAACAGAA
GCACTCACTACCATGCCCTCGCGCACAATGTCTGGGAGTCCTTCCACCCT
ATGAACTTACTCTATGGGCTGTGTCGGGTTCGTTGCCGATATGCCATCGA
TGTCATGTGATTGATGCGGTGCAGAGCTGATCTGATGTTTGGACTTTTTC
AAACGGCGCGATCCTCCAACGCGAGCTACTGTATCATACACAGCTAATAA
CCTAAACGCAGCGACTAGCTACAAGTATTATTGCTGCTGTACAACTATTA
CAAGTACAGTAGCTCAGTAGCTGGTCGAGGGGCTCAGGCCGGACAGCCAT
GCACCTCCAGACAGCCATCGCGTTTCACTATCCTGAACTTCCCAGGATTG
CTAACAGCCAACGTTCTGTTGAGCGAGTCAGGCCCCATTTTGAATCCCCG
TTTGGTTGTCCGTGGGGACAGTAGGCATTTGTACATGTCAAAGAAAGCAC
GACGATGCCAACAACAGCGTTTTCAAAGACCCACCACGGGGCCATCGCTG
TCGCGACGAGCTCCCTCGGGACGACAGCCACGCTTCGAATACATAGCGCT
CTCCTTGAATCCATGCGCGGTATTTAATGCGATCCCTATGGCCTTGCACA
CAGCGCCCGCGGATACATTCTATTAATACAACACTTTGATGAGCGAAAGC
ACATGCGTGCATATGTATCGTGTGCACTTGTATGCATACAAGTACGCCCT
CGTCGTTGCTCTCGTGGGTCTCTCAAGCTCTCTGTACCGGACGAGAAGAT
CGCAACTTCCACCCCTCCAAAACGTAGATTGCAGAGCTGGAAGGTAGGTG
CCCCCCTCCCCCCGCCCCTTGTTAGCCAACGGCGGCGACTACCGATATGA
CACAACAGCGGCTCTGAGAGGGACATCTTTACACTTTGCCAGTTCCTCAA
TCTCTTATATGTACGAAGTATACCACTACTCTGTATGCATGCATATGAGT
TAGGCGGTCTTCGAAGAATGGATTATGATGCAGTATGCAAGACACCGCGT
ACGCCTTCTGGTTTTCCATGGAGGGTATGGTGCTTATATGACCCCCCCCT
ATGGTCTAACGACTACGGCATGCACGATCAATGAGTACACCCCCCCCCCG
CCCCCGCTCTGATCCTTATTCCAGTTTTTTACCTACCTTCCAGCATCCAC
AACCCGCGAGACCCCTTGAGTTATTGTTTGGAGGTACAAGTAGGCATACT
CGTGGGAGCGAAAGAAGCATGGTATTTTAGAGCTAATATAGTCCTACAGA
GAGTATGTGCGCATCTAGTGCTGCTGCTGCCGCTACGTGGACCAAACGAC
GCCAGCGGTAAACCACAAGAAATGGCGCGTTTCGGAGACCACTTTACCCC
CCCCAACAACTAAACGCAGAACACGTAAATCGGCCATCGCCCGTCTTCAG
CCACAGCATTGTATACCCCGTAGTTGGCGCACCAAGGAGCCGTCTTGCGT
TCCGAGCCTCCCCTGCGAACGACCATCCCACCCACCAGTGTCGCCTCTGC
TCCTGGGTGACATCGTACAATCTCCACGATTTTTGCAACAGCGGCGTGTC
AACAGCTCCTCAATGTTGCCACATCGTCTCCCAAAAGGCATAAACACTCC
CCCCCCCCCCTTCCCCCCGCCCCTCACCGCCCCGCTTGCGGCAGCGCTTC
AACAATGGACAGGCCTACGGGTTGCGCGGTAGGCGCGCGGGAGACGCTTC
TACTCAGCCCTTGTCCGCGCTGGCACAAGGCTTCGCTAGCCCCGCCTCGG
CCTTGCCAGAAACAGAAACCCATACCGTGGTGCGGGCGGGGGCCGTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13164:4229..6226-

>mRNA_S-dermatodea_contig13164.1894.1 ID=mRNA_S-dermatodea_contig13164.1894.1|Name=mRNA_S-dermatodea_contig13164.1894.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig13164:4229..6226- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGAGGTGTGAGCAAGGTAGGGCCAAGGGGAACTTCGGATTTTGCTGCTC
TAGCTTTGCTGTGGCCACTATGTCGTCTTCTTCCGACTCGGAGACTATGG
ACGTACCGGGCTTCTTCGAGGTGAAGGGTCGCAGCGGCGATCCCACGACT
GAGGAGCTGCACTCGAGAGTCTCGAAGCCTAAGCGGAGGTGTGAGCAAGG
TAGGGCCAAGGGGAACTTCGGATTTTGCTGCTCTAGCTTTGCTGTGGCCA
CTATGTCGTCTTCTTCCGACTCGGAGACTATGGACGTACCGGGCTTCTTC
GAGGTGAAGGGTCGCAGCGGCGATCCCACGACTGAGGAGCTGCACTCGAG
AGTCTCGAAGCCTAAGCGCTTCAACAATGGACAGGCCTACGGGTTGCGCG
GTAGGCGCGCGGGAGACGCTTCTACTCAGCCCTTGTCCGCGCTGGCACAA
GGCTTCGCTAGCCCCGCCTCGGCCTTGCCAGAAACAGAAACCCATACCGT
GGTGCGGGCGGGGGCCGTGCGCTTCAACAATGGACAGGCCTACGGGTTGC
GCGGTAGGCGCGCGGGAGACGCTTCTACTCAGCCCTTGTCCGCGCTGGCA
CAAGGCTTCGCTAGCCCCGCCTCGGCCTTGCCAGAAACAGAAACCCATAC
CGTGGTGCGGGCGGGGGCCGTG
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