mRNA_S-dermatodea_contig13164.1893.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13164.1893.1
Unique NamemRNA_S-dermatodea_contig13164.1893.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13164.1893.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.350e-19
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 3 
Query:    6 AAATAASSANR---CSGSVLSHGWAFLCADGGVFAWEQGMVASERPGAAASADQACLRFDHPTMADELAAM 209
            A ATA +S  R   C+G VLSHGWAF+C D GV AWEQGMVA+ERPGAA  ADQ CLRF+HP M  ELA M
Sbjct:    5 AVATAETSGGRGCLCTGRVLSHGWAFMCTDTGVLAWEQGMVAAERPGAAVRADQVCLRFEHPAMMHELALM 75
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BLAST of mRNA_S-dermatodea_contig13164.1893.1 vs. uniprot
Match: D8LMM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM2_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.280e-14
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 3 
Query:   66 WAFLCADGGVFAWEQGMVASERPGAAASADQACLRFDHPTMADELAAMDVLEVSVEAADLVALTQPWEASGGKRELLLVSPRGLARYWPDLLSP 347
            WAF+C D GV AWEQGMVA+ERPGAA  AD+ACL+F+HP M  ELA M  L   +    +VAL       G    L  +S  G+ R  P L +P
Sbjct:   28 WAFMCTDTGVLAWEQGMVAAERPGAAVRADEACLQFEHPAMMHELAMMAPLGGKIAVTRVVAL-------GPTDFLCGLSRGGILRLRPGLDAP 114
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13164.1893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHH9_9PHAE3.350e-1967.61Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
D8LMM2_ECTSI1.280e-1448.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13164contigS-dermatodea_contig13164:1443..4228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size399
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13164.1893.1prot_S-dermatodea_contig13164.1893.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13164 1443..4228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924275.881093-CDS-S-dermatodea_contig13164:1442..16191622924275.881093-CDS-S-dermatodea_contig13164:1442..1619Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 1443..1619 -
1694079143.8134155-CDS-S-dermatodea_contig13164:1442..16191694079143.8134155-CDS-S-dermatodea_contig13164:1442..1619Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 1443..1619 -
1622924275.8978248-CDS-S-dermatodea_contig13164:2645..28031622924275.8978248-CDS-S-dermatodea_contig13164:2645..2803Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 2646..2803 -
1694079143.8218772-CDS-S-dermatodea_contig13164:2645..28031694079143.8218772-CDS-S-dermatodea_contig13164:2645..2803Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 2646..2803 -
1622924275.9172008-CDS-S-dermatodea_contig13164:4164..42281622924275.9172008-CDS-S-dermatodea_contig13164:4164..4228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 4165..4228 -
1694079143.8309731-CDS-S-dermatodea_contig13164:4164..42281694079143.8309731-CDS-S-dermatodea_contig13164:4164..4228Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13164 4165..4228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13164.1893.1

>prot_S-dermatodea_contig13164.1893.1 ID=prot_S-dermatodea_contig13164.1893.1|Name=mRNA_S-dermatodea_contig13164.1893.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
PLQQPRPLRRRIAARGVCSAMGGLSYARTEAFSPGNRVWWPPKDLGQQLA
LIRHACDSTTRRWPTNWRRWMSWKSPWKLRTWWLSPSPGRPPAGNGSFFW
CPRGGLRATGRTFSARAGTRTSTRARPLQGNR*
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mRNA from alignment at S-dermatodea_contig13164:1443..4228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13164.1893.1 ID=mRNA_S-dermatodea_contig13164.1893.1|Name=mRNA_S-dermatodea_contig13164.1893.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2786bp|location=Sequence derived from alignment at S-dermatodea_contig13164:1443..4228- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCTGCAGCAGCCACGGCCGCTTCGTCGGCGAATCGCTGCTCGGGGAGT
GTGCTCAGCCATGGGTAAGTACACGCACGTTTTAGAGGATGAGTTTGTTG
AAGCGACAGTGTTTTTGGGCGCTGGGGGTGGGAAGGGGTTGGGGTGGGGG
GGGGGCGTGCATGCTGGGATGAATTCCTCCAGACCTAGAAGGGTGTGAGT
ACGAAAACTCTCAACTCCGCTCTGACTATTAATCATGTGGTGGAGCATAG
TTAATAGACCCAATTGTCAAGTTAACACGCCAACAATTGCCCCAAGCGTC
TTCTTCTTCGGAGTGTTGAGTTTTTTCCGTTTTCTTCTGCTGTATTAATA
TTAATAGAAGACGCGCGCACGAATCTTGGCCGGAAGATAGATTATGAATA
CTTTGAAGAGCTCTTCTTCGAGGCCAGACGTACTTCTTCAGATATTGGTA
TATTGACCGACTTTGACGACGTTTTTTTCGTACACTTGGTTCCATTAACT
TTCTGCGTCCCTCCGTAATACTTGTGGTTTGTTTTTTTTCGGAGGGAATA
TCGTAGAATTGCATGTGTGGACTGCTGCCTCTCTTCCTCTCCGGGGGCAG
CGTCGTCATGGCCTTGTCGCTGGCGAGAAGAATCAGTGTGGCATGGTGGC
GCACGCCTCACACGTGATCGGTTGTCAATGGCCTGGACGATTGTGCGCGG
CGCCCATCTACCGTATAATAGTTGGCGCGCTTCGAGCGCCCGACCAGCTT
GAGTGCGTGTGTTACACTTGCGTACGCCCGAGAGAACCGGCGACAGAGTG
AAGGTTCCTAAAATTGGCGGAGCAGCGCCCCTACGATCGGGAAAACGAAT
CCCGCTGCCCGACCGTCATGCGTGTTGAGAACTCAGGTGGACGAGCGAGC
GTGCTTTCGACGGCGTGTTAACCCTTTTGGGACTAAGGTTGTTTTCGGGT
AACTGTTTGCTATTATGGTAGCCAACAGATGCCCGAAAACAGGCTTCGTC
CCCAGGCTTAGTCCGAAAAGGGTAAATAATAATAAATAGCAAACAGTTAG
TAATTACCCGAAAACAGCCTTAGTCCCAAAAGGGTTAAAGCAATCAATCA
ATAGCTCGGGCAGGTGGATATTCTGCGTAGTCCTACTCTTCCTCCCCCTC
CTCCTTGATCCTTCGCCGGTACGCATGTCGCGTTACGTTGTCCCTGCATA
GTAGCGGGGGGGCTCAGATGTCGCTGAATTTTGTAAAAAGCGTCACTGTT
GCGTCGGTTGCTCTAGCTCTAGAGCTCGGAGAGGGGTATCGAGTTGTCTT
GCCTACATTGAAATCTCGACGAGGTCCAGCGTGCGTTTGTGTCTCTGGTG
GTGCACCACGGTCACCCGCTTGTTTCCTCTCAAAATGCTGACCAACTCAC
ACCTCAACCTGCTCCACAAACGCAGGTGGGCTTTCCTATGCGCGGACGGA
GGCGTTTTCGCCTGGGAACAGGGTATGGTGGCCTCCGAAAGACCTGGGGC
AGCAGCTAGCGCTGATCAGGCATGCCTGCGATTCGACCACCCGACGATGG
CCGACGAATTGGCGGCGATGGATGTCCTGGAAGGCAAGCGTGCTTTAGCG
GATCGCGTCGTATGAGGGGAGGGGGGCACTTCTGCGTCTTGTTTGCACGC
TTTCATGATCATGTAGACCACTTGCTAACTGCTGACTGCTTGCTAACTGT
TCTGAAGTTTGTTTTTCTTTGGGTGGAGGGGGGGTGGGGGGCACTCGCAA
CTACTGTGTGTGTGTGTGTGAACATGTCTTGCTGTTTATTCGGCGTAGGT
TGTACGGTTGTTTGTTGCCCTTTTGGCTGCCGGTCGAAATCGGGCTGGCT
GTGCTTGCGCTCAACGCTTGCGTGGCGATTTGGCGCAACTTCCAAGAAGG
GGTGGAGTGTAATCTGTTAACCTCCGCCTGAACGATTTGCGAGCGGCGCT
GCTCGCGCTCGCGTCGTCTTGTTTGTGTTTCTCTAGGGCAGCGGGGTGGC
ACACTCACTGTCAGTAGTTTGGCTGGTTTGGGCTATCTAGGTTTCGGCGA
TTCAAAGCGGGCAAAAGCCTTCGCCTGTGTCGATGTGCACATGGCCTGCC
AAGTATTATGTGGCATTGTAAACAATTCTCTATAGGCCCCATGCATGCCT
CCATAAATCCAAAGCAGACTACCTCGAGCTACATACAGCACTAGAGCTAT
TAAACCTGGGCATAAACGAGCTACAACAGTATTACGGGGGACTAGACCAT
AGTTAACTTTAACAGGTCCAAATTTGCCCCCAGTCTCAACCTTGAAAAAT
CAAAATAGGCTGGAATTATCGAGATTTCAAGGGCGATTTTCTTGTGTATG
GCCATATCTCGTGTCTTTTTTTGTTTTTCGATATATTTTTTGTTGTTCTT
TGGGTGTTCATGGTCGGAATATTAATAGTTGGGTATTCATGGTCATGAGA
TTTGGTCCTGATTACTTGATTATAGTGTACCTCCGTAATAGTCCCTCCAG
ACACCCGTCATCACGCGACACGATCAGGATCGCCGCCCACCCAATAACGC
CTCCAAATTCCCCCTCTCGATTCCCACATTTCAATCCCGCGTCCTCGTCG
TGTACCCAGTCTCCGTGGAAGCTGCGGACTTGGTGGCTCTCACCCAGCCC
TGGGAGGCCTCCGGCGGGAAACGGGAGCTTCTTTTGGTGTCCCCGAGGGG
GCTTGCGCGCTACTGGCCGGACCTTCTCAGCCCGCGCCGGTACACGGACG
TCGACGCGTGCTCGGCCGCTCCAGGGCAATCGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13164:1443..4228-

>mRNA_S-dermatodea_contig13164.1893.1 ID=mRNA_S-dermatodea_contig13164.1893.1|Name=mRNA_S-dermatodea_contig13164.1893.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig13164:1443..4228- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCTGCAGCAGCCACGGCCGCTTCGTCGGCGAATCGCTGCTCGGGGAGT
GTGCTCAGCCATGGCCTCTGCAGCAGCCACGGCCGCTTCGTCGGCGAATC
GCTGCTCGGGGAGTGTGCTCAGCCATGGGTGGGCTTTCCTATGCGCGGAC
GGAGGCGTTTTCGCCTGGGAACAGGGTATGGTGGCCTCCGAAAGACCTGG
GGCAGCAGCTAGCGCTGATCAGGCATGCCTGCGATTCGACCACCCGACGA
TGGCCGACGAATTGGCGGCGATGGATGTCCTGGAAGGTGGGCTTTCCTAT
GCGCGGACGGAGGCGTTTTCGCCTGGGAACAGGGTATGGTGGCCTCCGAA
AGACCTGGGGCAGCAGCTAGCGCTGATCAGGCATGCCTGCGATTCGACCA
CCCGACGATGGCCGACGAATTGGCGGCGATGGATGTCCTGGAAGTCTCCG
TGGAAGCTGCGGACTTGGTGGCTCTCACCCAGCCCTGGGAGGCCTCCGGC
GGGAAACGGGAGCTTCTTTTGGTGTCCCCGAGGGGGCTTGCGCGCTACTG
GCCGGACCTTCTCAGCCCGCGCCGGTACACGGACGTCGACGCGTGCTCGG
CCGCTCCAGGGCAATCGGTAATCTCCGTGGAAGCTGCGGACTTGGTGGCT
CTCACCCAGCCCTGGGAGGCCTCCGGCGGGAAACGGGAGCTTCTTTTGGT
GTCCCCGAGGGGGCTTGCGCGCTACTGGCCGGACCTTCTCAGCCCGCGCC
GGTACACGGACGTCGACGCGTGCTCGGCCGCTCCAGGGCAATCGGTAA
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