mRNA_S-dermatodea_contig13156.1887.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13156.1887.1
Unique NamemRNA_S-dermatodea_contig13156.1887.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: D7FTF2_ECTSI (Store-operated calcium entry-associated regulatory factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF2_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.760e-15
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    7 NGQMGDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYTIDG 174
            N  +G++M P W+C AS+LP    LG+V VSCEGY+  DDPYVL GSCA+ YT+ G
Sbjct:   57 NEGIGENMMPSWSCTASSLPKDTELGSVNVSCEGYTYGDDPYVLAGSCAMEYTLTG 112          
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: D7FTI2_ECTSI (Store-operated calcium entry-associated regulatory factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTI2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.090e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    4 RNGQMGDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYTID 171
            +N   GDD QP+W C A  LP    LG V VSCEG+ +  DPYVLVGSC+LTY++D
Sbjct:   64 KNQGTGDDGQPQWECSAD-LPADGALGAVTVSCEGFDSPSDPYVLVGSCSLTYSLD 118          
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: A0A0L0VR78_9BASI (Store-operated calcium entry-associated regulatory factor n=3 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0VR78_9BASI)

HSP 1 Score: 67.0 bits (162), Expect = 1.220e-11
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   10 GQMGDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYTI 168
            G  G D+   W C+A  LP ++ LG VEV CEG+SN DDPYVL GSCALTYT+
Sbjct:   55 GGSGTDIN--WKCDAD-LPSTLKLGRVEVGCEGWSNADDPYVLKGSCALTYTL 104          
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: A0A316UEM1_9BASI (Store-operated calcium entry-associated regulatory factor (Fragment) n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316UEM1_9BASI)

HSP 1 Score: 63.5 bits (153), Expect = 1.530e-11
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   16 MGDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYTI 168
            +GD+   +W CEA  LP S+ +G VEVSCEGY   +DPYVL GSCALTY +
Sbjct:   49 LGDE---QWRCEAD-LPPSIRMGRVEVSCEGYEAPNDPYVLKGSCALTYQL 95          
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: E3L1M0_PUCGT (Store-operated calcium entry-associated regulatory factor n=3 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=E3L1M0_PUCGT)

HSP 1 Score: 66.2 bits (160), Expect = 1.890e-11
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   10 GQMGDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYTID 171
            G +G D+   W CEA  LP  + LG VEV CEG+SN  DPYVL GSCALTYT++
Sbjct:   55 GGLGTDVN--WKCEAD-LPAKLKLGRVEVGCEGWSNSQDPYVLKGSCALTYTLN 105          
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: F4R3I2_MELLP (Store-operated calcium entry-associated regulatory factor n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4R3I2_MELLP)

HSP 1 Score: 66.2 bits (160), Expect = 2.090e-11
Identity = 29/50 (58.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   19 GDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYTI 168
            G      W CEA  LP S+ LG  EVSCEG+ N DDPY+L GSC LTYT+
Sbjct:   56 GSGSNIHWKCEAD-LPSSIKLGRTEVSCEGFRNADDPYILEGSCGLTYTL 104          
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: A0A0P4WFS8_SCYOL (Store-operated calcium entry-associated regulatory factor n=2 Tax=Portunidae TaxID=6757 RepID=A0A0P4WFS8_SCYOL)

HSP 1 Score: 66.2 bits (160), Expect = 2.400e-11
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   10 GQMGDDMQPRWACEASTLPDSVY-LGTVEVSCEGYSNRDDPYVLVGSCALTYTIDGTPSG 186
            G  G+D+Q  W C+  T  D+ Y  G++EVSCEGY +RDDPYVL GSC L YTID T  G
Sbjct:   85 GWDGEDVQ--WECK--TDMDNAYRFGSIEVSCEGYEHRDDPYVLKGSCGLRYTIDYTKEG 140          
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: A0A0L6V1C1_9BASI (Store-operated calcium entry-associated regulatory factor n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6V1C1_9BASI)

HSP 1 Score: 65.5 bits (158), Expect = 4.750e-11
Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   10 GQMGDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYTI--------DGTPSG 186
            G  G D+   W CEA  LP  + LG VEV CEG+SN  DPY+L GSCALTYT+        D +P G
Sbjct:   54 GGSGTDIN--WKCEAD-LPSKLKLGRVEVGCEGWSNSQDPYILKGSCALTYTLKVDSSSSYDASPDG 117          
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: A0A177UGM2_9BASI (Store-operated calcium entry-associated regulatory factor n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UGM2_9BASI)

HSP 1 Score: 65.5 bits (158), Expect = 5.410e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 IRNGQMGDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYTI 168
            ++   MGD    +W CEA  LP+++ LG VEVSCEG+ N DDPYVL GSC LTY +
Sbjct:   81 VQCSSMGDW---QWKCEAE-LPEALRLGKVEVSCEGWENADDPYVLSGSCGLTYNL 132          
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Match: A0A5B0PCK3_PUCGR (Store-operated calcium entry-associated regulatory factor n=2 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=A0A5B0PCK3_PUCGR)

HSP 1 Score: 65.1 bits (157), Expect = 6.880e-11
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   10 GQMGDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYTI 168
            G  G D+   W CEA  LP  + LG VEV CEG+SN +DPYVL GSCALTYT+
Sbjct:   55 GGSGTDVN--WKCEAD-LPAKLKLGRVEVGCEGWSNANDPYVLKGSCALTYTL 104          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13156.1887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTF2_ECTSI2.760e-1557.14Store-operated calcium entry-associated regulatory... [more]
D7FTI2_ECTSI1.090e-1257.14Store-operated calcium entry-associated regulatory... [more]
A0A0L0VR78_9BASI1.220e-1160.38Store-operated calcium entry-associated regulatory... [more]
A0A316UEM1_9BASI1.530e-1158.82Store-operated calcium entry-associated regulatory... [more]
E3L1M0_PUCGT1.890e-1159.26Store-operated calcium entry-associated regulatory... [more]
F4R3I2_MELLP2.090e-1158.00Store-operated calcium entry-associated regulatory... [more]
A0A0P4WFS8_SCYOL2.400e-1156.67Store-operated calcium entry-associated regulatory... [more]
A0A0L6V1C1_9BASI4.750e-1150.75Store-operated calcium entry-associated regulatory... [more]
A0A177UGM2_9BASI5.410e-1155.36Store-operated calcium entry-associated regulatory... [more]
A0A5B0PCK3_PUCGR6.880e-1160.38Store-operated calcium entry-associated regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13156contigS-dermatodea_contig13156:865..1053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue8.6e-10
Seed eggNOG ortholog2880.D7FTI2
Preferred nameTMEM66
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256
EggNOG free text desc.Store-operated calcium entry-associated regulatory factor
EggNOG OGs28KQW@1,2QT6Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionProtein of unknown function DUF1183, TMEM66
Ec32 orthologEc-21_001110.1
Exons1
Model size189
Cds size174
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924275.4775913-UTR-S-dermatodea_contig13156:864..8791622924275.4775913-UTR-S-dermatodea_contig13156:864..879Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13156 865..879 +
1694079143.5197616-UTR-S-dermatodea_contig13156:864..8791694079143.5197616-UTR-S-dermatodea_contig13156:864..879Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13156 865..879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924275.4893909-CDS-S-dermatodea_contig13156:879..10531622924275.4893909-CDS-S-dermatodea_contig13156:879..1053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13156 880..1053 +
1694079143.5340044-CDS-S-dermatodea_contig13156:879..10531694079143.5340044-CDS-S-dermatodea_contig13156:879..1053Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13156 880..1053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13156.1887.1prot_S-dermatodea_contig13156.1887.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13156 880..1053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13156.1887.1

>prot_S-dermatodea_contig13156.1887.1 ID=prot_S-dermatodea_contig13156.1887.1|Name=mRNA_S-dermatodea_contig13156.1887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=58bp
MGDDMQPRWACEASTLPDSVYLGTVEVSCEGYSNRDDPYVLVGSCALTYT
IDGTPSG*
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mRNA from alignment at S-dermatodea_contig13156:865..1053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13156.1887.1 ID=mRNA_S-dermatodea_contig13156.1887.1|Name=mRNA_S-dermatodea_contig13156.1887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at S-dermatodea_contig13156:865..1053+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTCGCAATGGCCAGATGGGCGACGATATGCAGCCGCGTTGGGCGTGCGA GGCAAGCACCCTCCCGGATTCGGTGTACCTGGGCACCGTCGAAGTTTCTT GCGAGGGCTATTCGAACCGTGACGATCCCTACGTTCTTGTCGGCAGCTGC GCGTTAACCTACACAATCGACGGGACCCCCTCGGGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13156:865..1053+

>mRNA_S-dermatodea_contig13156.1887.1 ID=mRNA_S-dermatodea_contig13156.1887.1|Name=mRNA_S-dermatodea_contig13156.1887.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig13156:865..1053+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGACGATATGCAGCCGCGTTGGGCGTGCGAGGCAAGCACCCTCCC
GGATTCGGTGTACCTGGGCACCGTCGAAGTTTCTTGCGAGGGCTATTCGA
ACCGTGACGATCCCTACGTTCTTGTCGGCAGCTGCGCGTTAACCTACACA
ATCGACGGGACCCCCTCGGGGTAGATGGGCGACGATATGCAGCCGCGTTG
GGCGTGCGAGGCAAGCACCCTCCCGGATTCGGTGTACCTGGGCACCGTCG
AAGTTTCTTGCGAGGGCTATTCGAACCGTGACGATCCCTACGTTCTTGTC
GGCAGCTGCGCGTTAACCTACACAATCGACGGGACCCCCTCGGGGTAG
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