mRNA_S-dermatodea_contig13141.1884.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13141.1884.1
Unique NamemRNA_S-dermatodea_contig13141.1884.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: A0A6H5KQ95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ95_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.840e-46
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRA+ELDRLLNLCNFPSLVIHSRLKQEER
Sbjct:  263 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAVELDRLLNLCNFPSLVIHSRLKQEER 342
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BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: D8LK23_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK23_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.980e-44
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRA+ELDRLLNLCNFPSLVIHSRLKQEER
Sbjct:  262 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAVELDRLLNLCNFPSLVIHSRLKQEER 341
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BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: A0A482RXG3_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXG3_9ARCH)

HSP 1 Score: 129 bits (324), Expect = 5.070e-36
Identity = 61/80 (76.25%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            MEI+VDD+TKLTLHGLQQYY++L E+EKNRKL DLLD+LDFNQVVIF +KV RA+EL +LL  CNFPS+ IHS LKQEER
Sbjct:    1 MEIFVDDDTKLTLHGLQQYYVRLGESEKNRKLTDLLDMLDFNQVVIFVAKVARAVELSKLLEDCNFPSICIHSSLKQEER 80
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BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: A0A836CDU8_9STRA (Dead box family RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 5.170e-36
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            MEIYVD E KLTLHGLQQY+++LAETEKNRKLNDLLD L+FNQVVIFCSKV+RAIEL+RLL +CNFPS V+HSR+ QE R
Sbjct:  248 MEIYVDKEDKLTLHGLQQYFVRLAETEKNRKLNDLLDALEFNQVVIFCSKVERAIELNRLLLMCNFPSTVLHSRMAQETR 327
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BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: A0A7S2CS57_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS57_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.440e-35
Identity = 61/80 (76.25%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            ME+++D++TKLTLHGLQQYY+KL E+EKNRKLNDLLD L+FNQVVIF SKV RA EL+RLL+ CNFPSL IHS +KQEER
Sbjct:   26 MEVFIDNDTKLTLHGLQQYYVKLKESEKNRKLNDLLDALEFNQVVIFVSKVARATELNRLLDECNFPSLCIHSGMKQEER 105
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BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: A0A392R5Y0_9FABA (DEAD-box ATP-dependent RNA helicase 56-like n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392R5Y0_9FABA)

HSP 1 Score: 123 bits (309), Expect = 3.510e-35
Identity = 62/80 (77.50%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            MEIYVDDE KLTLHGL Q+YIKL E EKNRKLNDLLD LDFNQVVIF   V RA ELDRLL  CNFPS+ IHS + QEER
Sbjct:    1 MEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLIECNFPSICIHSGMSQEER 80
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BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: A0A7S4E8S1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8S1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 7.820e-35
Identity = 65/80 (81.25%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            MEIYVDD+TKLTLHGLQQYY+KL E EKNRKLNDLLD LDFNQVVIF SKV RA ELDRLL  CNFPS+ IHS + QEER
Sbjct:  241 MEIYVDDDTKLTLHGLQQYYVKLQEAEKNRKLNDLLDALDFNQVVIFVSKVARATELDRLLTECNFPSVCIHSGMGQEER 320
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BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: A0A7S1H579_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H579_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.570e-34
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            MEIYVDD+TKLTLHGLQ YY+KLAE EKNRKLNDLLD L+FNQVVIF SKV RA EL+RLL  CNFPS+ IH+ +KQEER
Sbjct:  137 MEIYVDDDTKLTLHGLQLYYVKLAEAEKNRKLNDLLDALEFNQVVIFVSKVARANELNRLLTECNFPSICIHAGMKQEER 216
[Close]
BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: F0XZR0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZR0_AURAN)

HSP 1 Score: 130 bits (328), Expect = 2.310e-34
Identity = 65/80 (81.25%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            MEIYVDD+TKLTLHGLQQYY+KL E EKNRKLNDLLD LDFNQVVIF SKV RA ELDRLL  CNFPS+ IHS + QEER
Sbjct:  272 MEIYVDDDTKLTLHGLQQYYVKLQEAEKNRKLNDLLDALDFNQVVIFVSKVARATELDRLLCECNFPSVCIHSGMTQEER 351
[Close]
BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Match: UPI000CE27298 (DEAD-box ATP-dependent RNA helicase 56-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE27298)

HSP 1 Score: 121 bits (304), Expect = 3.770e-34
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    1 MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAIELDRLLNLCNFPSLVIHSRLKQEER 240
            MEIYVDDE KLTLHGL Q+YIKL+E+EKNRKLNDLL+ LDFNQVVIF   V+RA EL++LL  CNFPS+ IHS + QEER
Sbjct:    1 MEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLNALDFNQVVIFVKSVNRAAELNKLLKECNFPSICIHSGMSQEER 80
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13141.1884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ95_9PHAE3.840e-4698.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK23_ECTSI1.980e-4498.75DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A482RXG3_9ARCH5.070e-3676.25DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
A0A836CDU8_9STRA5.170e-3680.00Dead box family RNA helicase n=1 Tax=Tribonema min... [more]
A0A7S2CS57_9STRA1.440e-3576.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A392R5Y0_9FABA3.510e-3577.50DEAD-box ATP-dependent RNA helicase 56-like n=1 Ta... [more]
A0A7S4E8S1_9STRA7.820e-3581.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1H579_9STRA1.570e-3478.75Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
F0XZR0_AURAN2.310e-3481.25Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI000CE272983.770e-3473.75DEAD-box ATP-dependent RNA helicase 56-like n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13141contigS-dermatodea_contig13141:2952..3902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue4.7e-38
Seed eggNOG ortholog2880.D8LK23
Preferred nameDDX39A
KEGG koko:K12812,ko:K13182,ko:K20365,ko:K20367
KEGG Pathwayko03013,ko03015,ko03040,ko05164,map03013,map03015,map03040,map05164
KEGG ModuleM00406,M00430
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007275,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009555,GO:0009791,GO:0009908,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010501,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0022414,GO:0030054,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0042221,GO:0042623,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046686,GO:0046907,GO:0048229,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070035,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090567,GO:0097159,GO:0099402,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.mRNA-containing ribonucleoprotein complex export from nucleus
EggNOG OGsCOG0445@1,COG0513@1,KOG0329@2759,KOG2667@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924275.3354878-CDS-S-dermatodea_contig13141:2951..30651622924275.3354878-CDS-S-dermatodea_contig13141:2951..3065Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13141 2952..3065 -
1694079143.4189916-CDS-S-dermatodea_contig13141:2951..30651694079143.4189916-CDS-S-dermatodea_contig13141:2951..3065Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13141 2952..3065 -
1622924275.345443-CDS-S-dermatodea_contig13141:3773..39021622924275.345443-CDS-S-dermatodea_contig13141:3773..3902Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13141 3774..3902 -
1694079143.4299412-CDS-S-dermatodea_contig13141:3773..39021694079143.4299412-CDS-S-dermatodea_contig13141:3773..3902Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13141 3774..3902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13141.1884.1prot_S-dermatodea_contig13141.1884.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13141 2952..3902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13141.1884.1

>prot_S-dermatodea_contig13141.1884.1 ID=prot_S-dermatodea_contig13141.1884.1|Name=mRNA_S-dermatodea_contig13141.1884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=81bp
MEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSK
VDRAIELDRLLNLCNFPSLVIHSRLKQEER*
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mRNA from alignment at S-dermatodea_contig13141:2952..3902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13141.1884.1 ID=mRNA_S-dermatodea_contig13141.1884.1|Name=mRNA_S-dermatodea_contig13141.1884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=951bp|location=Sequence derived from alignment at S-dermatodea_contig13141:2952..3902- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGATCTATGTGGACGACGAGACGAAGCTTACCCTGCACGGATTGCA
GCAGTACTACATCAAGCTCGCCGAGACTGAGAAGAACCGCAAGTTGAATG
ACCTGCTGGACCTGCTGGACTTCAACCAGGTAAGATATACTTACACACGT
GTATATAGTGGATATAATAGGAAACCCCACGCTGTATATAATGGATATAA
TGGGAAACCCCACGGAGGCGTTCTTGCGTGTGTGTTCTGTTCTGTGCCAT
GCTTTGCCTTTTTTTTTCAGGGAGTTGTGTCGGGCGGGGGGAAACTGCTC
GCTCCCGTGTACTGGGGACATTTACAAGTATATGGTAGCTTCATACATGG
AAGGAGACGCGGGGTTAGGCGTGTGTTGTGACGTGAAGCGTGGATTGTAG
AGGGGAATGGTCCTGCGCGTTTTTGGTGCTGCCGGGTATGGTACGTAAAA
GCTATGCACCCGCCCCCAAGTAGATTGTGAACGAACTCTCATCGCCGTGT
TTTGGTGCATTCCGCCTCCCCCCCGCCCCCCTCTCTATTTTGCTGCTGCG
GCAGATGCGGTCGGTATCGAGCCTACCGTAGGTTGCATAAGATATCACAC
CTATCTTAGATACCACACCCCCTAAAAATGGTAAACAATACCACACATGT
GTGATCTTTTTTTTTATCCCAAAATGTTATCATACCGGTGTGGTATCTTA
TGCAACCTACGGTAGTGTTGACAGTGGTGAGGTTATTTATTTACTTTTTC
CACTTTCGTCTCACTCCCCCCACCCCCCTATATCCTATAATCCTATATCC
TACATCTCCCCCTCTGGTGCCGTTGTATTCTGGTTAGGTGGTGATATTCT
GCTCCAAGGTGGACAGGGCGATCGAGCTGGACCGCCTCCTCAACCTCTGC
AACTTCCCCTCGCTGGTCATCCACTCTCGCCTCAAGCAGGAGGAGCGGTA
A
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Coding sequence (CDS) from alignment at S-dermatodea_contig13141:2952..3902-

>mRNA_S-dermatodea_contig13141.1884.1 ID=mRNA_S-dermatodea_contig13141.1884.1|Name=mRNA_S-dermatodea_contig13141.1884.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig13141:2952..3902- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGATCTATGTGGACGACGAGACGAAGCTTACCCTGCACGGATTGCA
GCAGTACTACATCAAGCTCGCCGAGACTGAGAAGAACCGCAAGTTGAATG
ACCTGCTGGACCTGCTGGACTTCAACCAGATGGAGATCTATGTGGACGAC
GAGACGAAGCTTACCCTGCACGGATTGCAGCAGTACTACATCAAGCTCGC
CGAGACTGAGAAGAACCGCAAGTTGAATGACCTGCTGGACCTGCTGGACT
TCAACCAGGTGGTGATATTCTGCTCCAAGGTGGACAGGGCGATCGAGCTG
GACCGCCTCCTCAACCTCTGCAACTTCCCCTCGCTGGTCATCCACTCTCG
CCTCAAGCAGGAGGAGCGGTAAGTGGTGATATTCTGCTCCAAGGTGGACA
GGGCGATCGAGCTGGACCGCCTCCTCAACCTCTGCAACTTCCCCTCGCTG
GTCATCCACTCTCGCCTCAAGCAGGAGGAGCGGTAA
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