mRNA_S-dermatodea_contig1313.1876.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1313.1876.1
Unique NamemRNA_S-dermatodea_contig1313.1876.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1313.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1313contigS-dermatodea_contig1313:18999..19447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size449
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.6896784-UTR-S-dermatodea_contig1313:18998..191171622924274.6896784-UTR-S-dermatodea_contig1313:18998..19117Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1313 18999..19117 +
1694079142.9303505-UTR-S-dermatodea_contig1313:18998..191171694079142.9303505-UTR-S-dermatodea_contig1313:18998..19117Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1313 18999..19117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.7018533-CDS-S-dermatodea_contig1313:19117..194471622924274.7018533-CDS-S-dermatodea_contig1313:19117..19447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1313 19118..19447 +
1694079142.9386735-CDS-S-dermatodea_contig1313:19117..194471694079142.9386735-CDS-S-dermatodea_contig1313:19117..19447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1313 19118..19447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1313.1876.1prot_S-dermatodea_contig1313.1876.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1313 19118..19447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1313.1876.1

>prot_S-dermatodea_contig1313.1876.1 ID=prot_S-dermatodea_contig1313.1876.1|Name=mRNA_S-dermatodea_contig1313.1876.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
MVSHRVFTAPWLLRQLPPLLMMMLLLLLPAQALLSVPSRPPPRPSARPFT
GSSAPLGEGEAPGATAAAPQGTTTAWTPVASRCRAARTALAASSSSDDAG
PASAAVAASG
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mRNA from alignment at S-dermatodea_contig1313:18999..19447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1313.1876.1 ID=mRNA_S-dermatodea_contig1313.1876.1|Name=mRNA_S-dermatodea_contig1313.1876.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=449bp|location=Sequence derived from alignment at S-dermatodea_contig1313:18999..19447+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAGAAATAGGTGGTCACAAGTGGCAAACCGAGTCAAGTTGCACGTGCT
CACCCTTTGATCCACCTCTGTAGCACGAACTGCCTTGTCCCTCGCGTCGA
GAGCAAGGAAGGGGTGCAAATGGTGAGTCATCGAGTCTTTACTGCCCCAT
GGCTTCTGCGGCAGCTACCACCGCTGCTGATGATGATGCTGCTGCTGCTG
CTCCCCGCGCAAGCTCTACTAAGCGTGCCATCGCGACCACCGCCACGGCC
GTCGGCTCGCCCCTTCACGGGCTCCTCTGCTCCTCTAGGCGAAGGAGAAG
CACCGGGTGCAACTGCGGCCGCGCCTCAGGGGACCACTACAGCGTGGACA
CCAGTAGCATCGCGTTGCCGGGCCGCACGCACGGCACTTGCGGCATCGTC
ATCATCAGACGATGCCGGGCCTGCTTCCGCCGCCGTCGCCGCCAGCGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1313:18999..19447+

>mRNA_S-dermatodea_contig1313.1876.1 ID=mRNA_S-dermatodea_contig1313.1876.1|Name=mRNA_S-dermatodea_contig1313.1876.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig1313:18999..19447+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGAGTCATCGAGTCTTTACTGCCCCATGGCTTCTGCGGCAGCTACC
ACCGCTGCTGATGATGATGCTGCTGCTGCTGCTCCCCGCGCAAGCTCTAC
TAAGCGTGCCATCGCGACCACCGCCACGGCCGTCGGCTCGCCCCTTCACG
GGCTCCTCTGCTCCTCTAGGCGAAGGAGAAGCACCGGGTGCAACTGCGGC
CGCGCCTCAGGGGACCACTACAGCGTGGACACCAGTAGCATCGCGTTGCC
GGGCCGCACGCACGGCACTTGCGGCATCGTCATCATCAGACGATGCCGGG
CCTGCTTCCGCCGCCGTCGCCGCCAGCGGTATGGTGAGTCATCGAGTCTT
TACTGCCCCATGGCTTCTGCGGCAGCTACCACCGCTGCTGATGATGATGC
TGCTGCTGCTGCTCCCCGCGCAAGCTCTACTAAGCGTGCCATCGCGACCA
CCGCCACGGCCGTCGGCTCGCCCCTTCACGGGCTCCTCTGCTCCTCTAGG
CGAAGGAGAAGCACCGGGTGCAACTGCGGCCGCGCCTCAGGGGACCACTA
CAGCGTGGACACCAGTAGCATCGCGTTGCCGGGCCGCACGCACGGCACTT
GCGGCATCGTCATCATCAGACGATGCCGGGCCTGCTTCCGCCGCCGTCGC
CGCCAGCGGT
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