mRNA_S-dermatodea_contig13127.1871.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13127.1871.1
Unique NamemRNA_S-dermatodea_contig13127.1871.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: D8LST9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.130e-17
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 TPMIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            TPMIRNG+TGDWIGTFVGHKGAVWGVALDDTG+LAAT S
Sbjct:   45 TPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATAS 83
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: A0A6H5KS17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS17_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.350e-15
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    7 MIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            MIRNG+TGDWIGTFVGHKGAVWGVALDDTG+LAAT S
Sbjct:    1 MIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATAS 37
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: A0A835YS18_9STRA (WD40-repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS18_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.590e-12
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 TPMIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            TPM+R G TGDWIGTF GHKGAVWGVALD   M+AAT S
Sbjct:   46 TPMLRRGDTGDWIGTFEGHKGAVWGVALDPQAMIAATAS 84
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: A0A7S3XEH0_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XEH0_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.180e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 PMIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            PM+RNGTTGDWIGTF GHKGAVW   L+ T  LAATGS
Sbjct:  108 PMLRNGTTGDWIGTFEGHKGAVWSACLNSTATLAATGS 145
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: A0A7M7JNH2_VARDE (Uncharacterized protein n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7JNH2_VARDE)

HSP 1 Score: 66.2 bits (160), Expect = 1.210e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 PMIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            PM+R+G TGDWIGTF GHKGAVW V LD +G LAATGS
Sbjct:   43 PMLRDGVTGDWIGTFEGHKGAVWSVCLDGSGKLAATGS 80
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: A0A7J7PRN3_9CHLO (WD40 repeat-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PRN3_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 1.420e-11
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 PMIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            PM+R+GTTGDWIGTF+GHKG VW  ALD +  LAATGS
Sbjct:   43 PMLRSGTTGDWIGTFIGHKGCVWSCALDPSATLAATGS 80
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: A0A1V9XVI8_9ACAR (Serine-threonine kinase receptor-associated protein-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XVI8_9ACAR)

HSP 1 Score: 65.9 bits (159), Expect = 1.660e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 PMIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            PM+R+G TGDWIGTF GHKGAVW V LD  G LAATGS
Sbjct:   43 PMLRDGVTGDWIGTFEGHKGAVWSVCLDGVGKLAATGS 80
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: A0A0L7L1M4_9NEOP (Putative serine-threonine kinase receptor-associated protein n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7L1M4_9NEOP)

HSP 1 Score: 61.6 bits (148), Expect = 1.820e-11
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 PMIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            PM+R G TGDWIGTF GHKGAVWGVAL     LAA+G+
Sbjct:   42 PMLRQGETGDWIGTFEGHKGAVWGVALSQNANLAASGA 79
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: T1PDW2_MUSDO (WD domain protein n=2 Tax=Musca domestica TaxID=7370 RepID=T1PDW2_MUSDO)

HSP 1 Score: 65.5 bits (158), Expect = 1.920e-11
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 TPMIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            +PM+R G TGDW+GTF GHKGAVWGVAL+ T  LAATG+
Sbjct:   42 SPMLRQGDTGDWVGTFEGHKGAVWGVALNKTATLAATGA 80
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BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Match: A0A5J5BHX0_9ASTE (Uncharacterized protein n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A5J5BHX0_9ASTE)

HSP 1 Score: 64.7 bits (156), Expect = 3.580e-11
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 TPMIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS 117
            TPM+RNG TGDWIGTF GHKGAVWG  LD   + AA+GS
Sbjct:   42 TPMLRNGQTGDWIGTFEGHKGAVWGCCLDTNALRAASGS 80
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13127.1871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST9_ECTSI5.130e-1792.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS17_9PHAE2.350e-1591.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YS18_9STRA3.590e-1276.92WD40-repeat protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S3XEH0_9CHLO1.180e-1176.32Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7M7JNH2_VARDE1.210e-1176.32Uncharacterized protein n=2 Tax=Varroa TaxID=62624... [more]
A0A7J7PRN3_9CHLO1.420e-1173.68WD40 repeat-like protein n=1 Tax=Scenedesmus sp. N... [more]
A0A1V9XVI8_9ACAR1.660e-1176.32Serine-threonine kinase receptor-associated protei... [more]
A0A0L7L1M4_9NEOP1.820e-1171.05Putative serine-threonine kinase receptor-associat... [more]
T1PDW2_MUSDO1.920e-1171.79WD domain protein n=2 Tax=Musca domestica TaxID=73... [more]
A0A5J5BHX0_9ASTE3.580e-1171.79Uncharacterized protein n=2 Tax=Pentapetalae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13127contigS-dermatodea_contig13127:242..358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue3.5e-12
Seed eggNOG ortholog2880.D8LST9
Preferred nameSTRAP
KEGG koko:K13137
KEGG Pathwayko03013,map03013
KEGG ModuleM00426
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001894,GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007586,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010632,GO:0010633,GO:0010646,GO:0010648,GO:0010669,GO:0010717,GO:0010719,GO:0016043,GO:0016070,GO:0016071,GO:0017015,GO:0019219,GO:0019220,GO:0019222,GO:0022600,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023057,GO:0030277,GO:0030334,GO:0030336,GO:0030512,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032991,GO:0034622,GO:0034641,GO:0034719,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045892,GO:0045934,GO:0045936,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051270,GO:0051271,GO:0060249,GO:0060255,GO:0060393,GO:0060394,GO:0060429,GO:0060562,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0120114,GO:1901360,GO:1902679,GO:1903506,GO:1903507,GO:1903844,GO:1903845,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000146,GO:2001141
EggNOG free text desc.negative regulation of transforming growth factor beta receptor signaling pathway
EggNOG OGsKOG0278@1,KOG0278@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-15_002630.1
Exons1
Model size117
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.5118272-CDS-S-dermatodea_contig13127:241..3521622924274.5118272-CDS-S-dermatodea_contig13127:241..352Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13127 242..352 -
1694079142.8242517-CDS-S-dermatodea_contig13127:241..3521694079142.8242517-CDS-S-dermatodea_contig13127:241..352Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13127 242..352 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.529539-UTR-S-dermatodea_contig13127:352..3581622924274.529539-UTR-S-dermatodea_contig13127:352..358Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13127 353..358 -
1694079142.836949-UTR-S-dermatodea_contig13127:352..3581694079142.836949-UTR-S-dermatodea_contig13127:352..358Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13127 353..358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13127.1871.1prot_S-dermatodea_contig13127.1871.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13127 242..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13127.1871.1

>prot_S-dermatodea_contig13127.1871.1 ID=prot_S-dermatodea_contig13127.1871.1|Name=mRNA_S-dermatodea_contig13127.1871.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=37bp
MIRNGTTGDWIGTFVGHKGAVWGVALDDTGMLAATGS
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mRNA from alignment at S-dermatodea_contig13127:242..358-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13127.1871.1 ID=mRNA_S-dermatodea_contig13127.1871.1|Name=mRNA_S-dermatodea_contig13127.1871.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at S-dermatodea_contig13127:242..358- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACCCATGATCCGCAACGGAACGACGGGAGACTGGATCGGAACGTTTGT
GGGACACAAGGGGGCCGTTTGGGGGGTGGCGCTAGACGATACGGGCATGC
TCGCTGCCACAGGTTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13127:242..358-

>mRNA_S-dermatodea_contig13127.1871.1 ID=mRNA_S-dermatodea_contig13127.1871.1|Name=mRNA_S-dermatodea_contig13127.1871.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig13127:242..358- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCCGCAACGGAACGACGGGAGACTGGATCGGAACGTTTGTGGGACA
CAAGGGGGCCGTTTGGGGGGTGGCGCTAGACGATACGGGCATGCTCGCTG
CCACAGGTTCGATGATCCGCAACGGAACGACGGGAGACTGGATCGGAACG
TTTGTGGGACACAAGGGGGCCGTTTGGGGGGTGGCGCTAGACGATACGGG
CATGCTCGCTGCCACAGGTTCG
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