mRNA_S-dermatodea_contig13110.1864.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13110.1864.1
Unique NamemRNA_S-dermatodea_contig13110.1864.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13110.1864.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 6.160e-30
Identity = 89/125 (71.20%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:    1 SVCRCGLRELDPSLRLLPRVRRLSLAHNRVGTVDFFQDCAALEVLDMSFNRLESVENIHRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLSALPLLRRIALEGNPLEAE 375
            S+C+CGLRELDPSLRLLPRVRRLS+AHNR+  VDFFQDC +LEVLD+S NRL SVENIH V           XXXXXXXXXXXXXXXXXXXXXXXX       ARLS LP+LRR+ L GNP+EAE
Sbjct:  561 SICKCGLRELDPSLRLLPRVRRLSMAHNRLSRVDFFQDCGSLEVLDLSHNRLTSVENIHAVLGNLRSLKLRGXXXXXXXXXXXXXXXXXXXXXXXXIEDLKEAARLSTLPMLRRVWLNGNPVEAE 685
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BLAST of mRNA_S-dermatodea_contig13110.1864.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.490e-28
Identity = 100/125 (80.00%), Postives = 107/125 (85.60%), Query Frame = 1 
Query:    1 SVCRCGLRELDPSLRLLPRVRRLSLAHNRVGTVDFFQDCAALEVLDMSFNRLESVENIHRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLSALPLLRRIALEGNPLEAE 375
            SVC+CGLRELD SLRLLPRVRRLSLA+NR   VDFFQDC +LEVLD+S NRL SVENIH V XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      ARLS LP+LRR+ L GNP+EAE
Sbjct:  469 SVCKCGLRELDSSLRLLPRVRRLSLANNRFSRVDFFQDCGSLEVLDLSHNRLNSVENIHAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKEAARLSTLPMLRRVWLNGNPVEAE 593
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13110.1864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMA8_ECTSI6.160e-3071.20Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ecto... [more]
A0A6H5K372_9PHAE3.490e-2880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13110contigS-dermatodea_contig13110:169..1015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue8.4e-26
Seed eggNOG ortholog2880.D8LMA8
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1259@2759,KOG1859@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.249284-CDS-S-dermatodea_contig13110:168..3261622924274.249284-CDS-S-dermatodea_contig13110:168..326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13110 169..326 +
1694079142.6890175-CDS-S-dermatodea_contig13110:168..3261694079142.6890175-CDS-S-dermatodea_contig13110:168..326Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13110 169..326 +
1622924274.260559-CDS-S-dermatodea_contig13110:795..10151622924274.260559-CDS-S-dermatodea_contig13110:795..1015Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13110 796..1015 +
1694079142.7016025-CDS-S-dermatodea_contig13110:795..10151694079142.7016025-CDS-S-dermatodea_contig13110:795..1015Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13110 796..1015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13110.1864.1prot_S-dermatodea_contig13110.1864.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13110 169..1015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13110.1864.1

>prot_S-dermatodea_contig13110.1864.1 ID=prot_S-dermatodea_contig13110.1864.1|Name=mRNA_S-dermatodea_contig13110.1864.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
SVCRCGLRELDPSLRLLPRVRRLSLAHNRVGTVDFFQDCAALEVLDMSFN
RLESVENIHRVLGNLRALNLQGNRIGTTAGLERVFSLEEVDLSHNAIRGL
EEVARLSALPLLRRIALEGNPLEAE*
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mRNA from alignment at S-dermatodea_contig13110:169..1015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13110.1864.1 ID=mRNA_S-dermatodea_contig13110.1864.1|Name=mRNA_S-dermatodea_contig13110.1864.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=847bp|location=Sequence derived from alignment at S-dermatodea_contig13110:169..1015+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGTCTGTCGTTGTGGGCTTCGCGAGCTCGACCCTTCTTTGCGATTGCT
ACCCAGAGTACGTCGACTGTCGCTGGCGCACAACCGTGTTGGTACGGTGG
ATTTCTTCCAGGATTGCGCCGCGCTGGAAGTGCTCGACATGAGCTTCAAC
CGTCTCGAGTGAGTCACGAAAGGAGTGCTCTTGAAAGTTTTTCTAAAGGT
GAAGACTTCCCAAGCAGCGAAGAGGCCTGATTAATGGCAAGCGGTGGCTC
AAGAACTTTATCCTGACGTCGGACATACTTTGCCAATCCGAACGACTAAA
ATGGCCAGATGCTTCGTTTTAGCGCCATTGATGGGCAGCGTCTCTCTTCT
CACATGTCGGATTGGTTTCTAGCGGAAGCACGCAAAACCCGCGGGAAAGC
GAGGATTTTTGTTTCAGTGGTAAAGTTCCATTGCGGTGTTTCCTTACCAA
AGCATCAGCAACATGCGCTGTAAGGGGCCAGGAGCTGGAGGTAAACGCAC
GCTGTACGGGCGAAATACGCGCGAACGCGCGACCTTCCGATTCGTTTCAA
AAGTCGCCCGACTGCCCCACCCCCCCTTCTCGTGCTCCCCTCTTACCTTT
CCAATATCGACCGATTTCCGAACATAGATCCGTGGAGAACATTCACCGGG
TGCTGGGCAACCTCCGTGCGCTGAATCTCCAAGGCAACCGAATCGGAACA
ACCGCCGGACTGGAGCGCGTTTTTTCGCTCGAAGAGGTGGATCTGTCGCA
CAACGCTATCAGGGGGCTAGAGGAGGTGGCGCGGTTGTCGGCACTTCCGC
TGCTGCGCCGTATCGCTCTTGAGGGGAACCCACTGGAGGCTGAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13110:169..1015+

>mRNA_S-dermatodea_contig13110.1864.1 ID=mRNA_S-dermatodea_contig13110.1864.1|Name=mRNA_S-dermatodea_contig13110.1864.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig13110:169..1015+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGTCTGTCGTTGTGGGCTTCGCGAGCTCGACCCTTCTTTGCGATTGCT
ACCCAGAGTACGTCGACTGTCGCTGGCGCACAACCGTGTTGGTACGGTGG
ATTTCTTCCAGGATTGCGCCGCGCTGGAAGTGCTCGACATGAGCTTCAAC
CGTCTCGAAGCGTCTGTCGTTGTGGGCTTCGCGAGCTCGACCCTTCTTTG
CGATTGCTACCCAGAGTACGTCGACTGTCGCTGGCGCACAACCGTGTTGG
TACGGTGGATTTCTTCCAGGATTGCGCCGCGCTGGAAGTGCTCGACATGA
GCTTCAACCGTCTCGAATCCGTGGAGAACATTCACCGGGTGCTGGGCAAC
CTCCGTGCGCTGAATCTCCAAGGCAACCGAATCGGAACAACCGCCGGACT
GGAGCGCGTTTTTTCGCTCGAAGAGGTGGATCTGTCGCACAACGCTATCA
GGGGGCTAGAGGAGGTGGCGCGGTTGTCGGCACTTCCGCTGCTGCGCCGT
ATCGCTCTTGAGGGGAACCCACTGGAGGCTGAGTGAATCCGTGGAGAACA
TTCACCGGGTGCTGGGCAACCTCCGTGCGCTGAATCTCCAAGGCAACCGA
ATCGGAACAACCGCCGGACTGGAGCGCGTTTTTTCGCTCGAAGAGGTGGA
TCTGTCGCACAACGCTATCAGGGGGCTAGAGGAGGTGGCGCGGTTGTCGG
CACTTCCGCTGCTGCGCCGTATCGCTCTTGAGGGGAACCCACTGGAGGCT
GAGTGA
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