mRNA_S-dermatodea_contig13109.1862.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13109.1862.1
Unique NamemRNA_S-dermatodea_contig13109.1862.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13109.1862.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.340e-35
Identity = 86/150 (57.33%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:    1 MPGRRRPAF-IMASSMF-VAGWTLTQGFCFVPALTSCSVNVGRSASTSSEGRCR-ATERSDASRQ----GGLTMR-GLHKKGKNGPGLTGVQRVLNTRERVQVVADPCRVMISNLDFTLTEGDVKEFCSTAGLVAAVKLVKRRYAKTSRG 426
            MP  RR +F IMAS++   AG T  QGFCFVPALT             S  RC  AT    A++Q    GGLTMR GL  KGKNGPGLT + RV+ TR+RV    +PC+VMISNLD++LTE DV EFCSTAG VA VKLVK+ YAKTS+G
Sbjct:    1 MPTVRRRSFAIMASALCGAAGLTRVQGFCFVPALTG------------SNTRCHGATAERQATQQAQQGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKG 138
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13109.1862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT74_9PHAE2.340e-3557.33RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13109contigS-dermatodea_contig13109:182..2753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-12_002780.1
Exons3
Model size429
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13109.1862.1prot_S-dermatodea_contig13109.1862.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13109 182..2753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924273.9351544-CDS-S-dermatodea_contig13109:181..3071622924273.9351544-CDS-S-dermatodea_contig13109:181..307Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13109 182..307 -
1694079142.4819577-CDS-S-dermatodea_contig13109:181..3071694079142.4819577-CDS-S-dermatodea_contig13109:181..307Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13109 182..307 -
1622924273.9464614-CDS-S-dermatodea_contig13109:1229..13461622924273.9464614-CDS-S-dermatodea_contig13109:1229..1346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13109 1230..1346 -
1694079142.4904692-CDS-S-dermatodea_contig13109:1229..13461694079142.4904692-CDS-S-dermatodea_contig13109:1229..1346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13109 1230..1346 -
1622924273.9576023-CDS-S-dermatodea_contig13109:2567..27531622924273.9576023-CDS-S-dermatodea_contig13109:2567..2753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13109 2568..2753 -
1694079142.4993253-CDS-S-dermatodea_contig13109:2567..27531694079142.4993253-CDS-S-dermatodea_contig13109:2567..2753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13109 2568..2753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13109.1862.1

>prot_S-dermatodea_contig13109.1862.1 ID=prot_S-dermatodea_contig13109.1862.1|Name=mRNA_S-dermatodea_contig13109.1862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
MPGRRRPAFIMASSMFVAGWTLTQGFCFVPALTSCSVNVGRSASTSSEGR
CRATERSDASRQGGLTMRGLHKKGKNGPGLTGVQRVLNTRERVQVVADPC
RVMISNLDFTLTEGDVKEFCSTAGLVAAVKLVKRRYAKTSRG*
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mRNA from alignment at S-dermatodea_contig13109:182..2753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13109.1862.1 ID=mRNA_S-dermatodea_contig13109.1862.1|Name=mRNA_S-dermatodea_contig13109.1862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2572bp|location=Sequence derived from alignment at S-dermatodea_contig13109:182..2753- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTGGGCGAAGGAGACCTGCGTTTATCATGGCATCTTCAATGTTTGT
GGCGGGGTGGACGTTAACCCAGGGATTCTGCTTCGTGCCGGCGCTGACCT
CGTGCTCTGTGAACGTGGGGCGGTCGGCTTCTACTAGTAGTGAAGGGAGG
TGTCGCGCGACGGAGCGGAGCGACGCCAGTCGGCAGGTGAACAGAGAGCC
GCGTCGGTGCGCCACCCCCCTTTCCCCCGTCCTCGAACTCAGTTTTACTC
GAGCTGGCAATCCTTGTGTGTTGTTGGAGTCGCTCCAGTACTCTGTGCTC
TCGATCCTCGAACTAACAAACAGTCCTTGTTTGTCGTTATCATACAAACG
TCAAAGTTGTGTTTGCCCTGAAACGCGGTCATGTTCAACTCGGCCTGGCT
GGTCTGGTGTGGGTGTGGACCACGATTGTATGGATGTGGCGATCATGGGG
CGCCCACCTCGAGCTGGCAGCACAGCGGTGGCCTAAGAGGGCTAGCATAT
AAATGTATAATGGCGCTGCCGTCGTCGCGATGTGCGCCGTTCGTCGGCGT
TCTCCGCGCAACGTTGGTGTGTTTTTTTGTTTTTGTTTTTTTGTCCATCT
GCAGTCATACACTTGTACTGGTACCTTTTATTGTATGATACTGTATGCAT
AGCGGCTGCGTCGGCCAACAACGGCGCTCTCATGTAGCATGTACATGTAG
CATGTATTGTGTAGCAATGTATGATACTGGTAGCGTAAGGCGATGCTGTG
CTGTGATTGCTCTCCACCGGCGGACTCTTCATTATCTACGTGTGAGGTTA
TTGGAAGGCTGGGGTAGCCTGAAATCGCGGTGTTCCTTGAAGTGGGATAC
TATCCTGTTATACCGGCTGGCGCCTATTTATTGTGGAATACTAATAGCTA
GTATTAATAGCTCCATACGTAGACAAGTATATTAATACTCGTAGCATGAT
TCCACAAAAGCTAAGGTTTTATTTTTTGTTTTGTTGGGGCACACCTTTCT
TGGTGGGTGAGCTTCGCCGAGGTTGAAAGCTGTTTGAGACGAATGGAGAT
CCTCTGCGCGATCCACCCAGCAACCGCGTCCGAAGCAGCCACCACCAGCG
AAACGGCGTGGCAGCACAGTCAGCGCAAAGCACGCACCATTACAGAATAC
CACCCAACGGCATCGGTGTTGATAGATGGGTTTATTATTATATAAGGGTT
GCTCGAGAAGGGTCATGCGTCATGCACCTCAATAGTTTAAAGAGTTTCGA
TGCCCTCCCAACAGCAGTTTTCGTATTGTTATATCTTGTGTATTTCGCAC
CGACACCAGTGTCCTCCTTCATAAATGACACCTCCGTTATTTTTCTCGCC
ATCCGTATGACCGGCCGTTCGCTTCGACTATCTATGATAATGCTCACGCG
ATCCCAGGGGGGGCTGACGATGCGCGGCCTTCACAAGAAAGGCAAGAACG
GGCCGGGGCTTACCGGAGTACAGCGAGTCCTCAACACGCGGGAACGCGTC
CAAGTAGTCGCAGATCCTTGCAGGGTGAGCGGCTGGTCAATTTTCTGCAC
AACCTGTTATTTATTTTCTTGTTGTTTCACCGGAGCTCCTCCACCCGCCC
TGCCTCGACAATGTGTTGGGAGCTGCCGCACGGCGGCTGCGGTTCTGCGC
GTGCATGGCAGTAACAGCGCGCACGGTCGTAATTTGACAAGCGCATGCTT
TGCTGTTCGTCGAGGCGAAGAGCTGCGGCGTGTCCGGCTGCGGTTCTGCG
CGTGCATGGCAGTAACAGCGCGTACTGTCGTAATTTGACAAGAGCATGCT
AGTCGGGTGGGATTAAGCCGATCGGCTGTACGTGTGCAAATCAAATCAAA
CAAGCAATCAAATGGTTTCCTGTCGTCGAGGCCGAGAGCTGGGACTTGTC
CGGCTAACTTCCTCCCGACGGAGTGGCCCTGTTTGTTGTAGAGGGCTGAG
TGAAATTTTTGCTGTTCTCGAAAAGAGAAGAGAGGGACGCAAGAACGACG
GCCTCGTGGAATCCTGATCTGGCAAGGGCGACCCTCCCCGTTGTCCGAAG
AATCTGCCCTATCCGATTCACCATCGCTCTCATATGGCGATCGAATGCGG
CGGACCCCCTCCCTAGATTGCGGTGTGTGCCGCCACGGTTGCTGTAGCAT
ATATCTATATGCTCCGACTCGGTTACCGCGGCTCAAACACTTCAGAGTCC
CTGTATTAGTAGGTGCGGGCACCTCTTGCTCACGTATCATATGTGCCACG
ATTTGCCCACCTTGCTGGACACCCAAACCGGCGACCAACAGATACCGTAG
CGCCGTCCCGAGCGCTGGGTTCCGATAATGGTGCTCTATTTATCGGGTTA
ACAAGCGTAGCTTTGGTTGGAAGCTATTATTGTGTGCTTGCACAATCAAC
CCCCTGAACTTGGAGTTTCTCTATCGCGTGCGTGTGGGTTCGATAGGTGA
TGATCTCGAACCTGGACTTCACCTTGACCGAGGGTGACGTGAAGGAGTTC
TGCAGCACGGCAGGTCTCGTCGCCGCCGTTAAACTCGTCAAGCGGCGCTA
CGCCAAAACTTCAAGGGGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13109:182..2753-

>mRNA_S-dermatodea_contig13109.1862.1 ID=mRNA_S-dermatodea_contig13109.1862.1|Name=mRNA_S-dermatodea_contig13109.1862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig13109:182..2753- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTGGGCGAAGGAGACCTGCGTTTATCATGGCATCTTCAATGTTTGT
GGCGGGGTGGACGTTAACCCAGGGATTCTGCTTCGTGCCGGCGCTGACCT
CGTGCTCTGTGAACGTGGGGCGGTCGGCTTCTACTAGTAGTGAAGGGAGG
TGTCGCGCGACGGAGCGGAGCGACGCCAGTCGGCAGATGCCTGGGCGAAG
GAGACCTGCGTTTATCATGGCATCTTCAATGTTTGTGGCGGGGTGGACGT
TAACCCAGGGATTCTGCTTCGTGCCGGCGCTGACCTCGTGCTCTGTGAAC
GTGGGGCGGTCGGCTTCTACTAGTAGTGAAGGGAGGTGTCGCGCGACGGA
GCGGAGCGACGCCAGTCGGCAGGGGGGGCTGACGATGCGCGGCCTTCACA
AGAAAGGCAAGAACGGGCCGGGGCTTACCGGAGTACAGCGAGTCCTCAAC
ACGCGGGAACGCGTCCAAGTAGTCGCAGATCCTTGCAGGGGGGGGCTGAC
GATGCGCGGCCTTCACAAGAAAGGCAAGAACGGGCCGGGGCTTACCGGAG
TACAGCGAGTCCTCAACACGCGGGAACGCGTCCAAGTAGTCGCAGATCCT
TGCAGGGTGATGATCTCGAACCTGGACTTCACCTTGACCGAGGGTGACGT
GAAGGAGTTCTGCAGCACGGCAGGTCTCGTCGCCGCCGTTAAACTCGTCA
AGCGGCGCTACGCCAAAACTTCAAGGGGGTGAGTGATGATCTCGAACCTG
GACTTCACCTTGACCGAGGGTGACGTGAAGGAGTTCTGCAGCACGGCAGG
TCTCGTCGCCGCCGTTAAACTCGTCAAGCGGCGCTACGCCAAAACTTCAA
GGGGGTGA
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