prot_S-dermatodea_contig13109.1862.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig13109.1862.1
Unique Nameprot_S-dermatodea_contig13109.1862.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length143
Homology
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BLAST of mRNA_S-dermatodea_contig13109.1862.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.340e-35
Identity = 86/150 (57.33%), Postives = 100/150 (66.67%), Query Frame = 0 
Query:    1 MPGRRRPAF-IMASSMF-VAGWTLTQGFCFVPALTSCSVNVGRSASTSSEGRCR-ATERSDASRQ----GGLTMR-GLHKKGKNGPGLTGVQRVLNTRERVQVVADPCRVMISNLDFTLTEGDVKEFCSTAGLVAAVKLVKRRYAKTSRG 142
            MP  RR +F IMAS++   AG T  QGFCFVPALT             S  RC  AT    A++Q    GGLTMR GL  KGKNGPGLT + RV+ TR+RV    +PC+VMISNLD++LTE DV EFCSTAG VA VKLVK+ YAKTS+G
Sbjct:    1 MPTVRRRSFAIMASALCGAAGLTRVQGFCFVPALTG------------SNTRCHGATAERQATQQAQQGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKG 138
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13109.1862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT74_9PHAE2.340e-3557.33RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 36..142
e-value: 4.8E-7
score: 31.8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..142
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..27
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..35
score: 7.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.779
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 55..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13109contigS-dermatodea_contig13109:182..2753 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13109.1862.1mRNA_S-dermatodea_contig13109.1862.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig13109 182..2753 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig13109.1862.1 ID=prot_S-dermatodea_contig13109.1862.1|Name=mRNA_S-dermatodea_contig13109.1862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
MPGRRRPAFIMASSMFVAGWTLTQGFCFVPALTSCSVNVGRSASTSSEGR
CRATERSDASRQGGLTMRGLHKKGKNGPGLTGVQRVLNTRERVQVVADPC
RVMISNLDFTLTEGDVKEFCSTAGLVAAVKLVKRRYAKTSRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf