mRNA_S-dermatodea_contig1309.1853.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1309.1853.1
Unique NamemRNA_S-dermatodea_contig1309.1853.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1309.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1309contigS-dermatodea_contig1309:307..3675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924273.1002882-CDS-S-dermatodea_contig1309:306..4021622924273.1002882-CDS-S-dermatodea_contig1309:306..402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1309 307..402 +
1694079141.7683322-CDS-S-dermatodea_contig1309:306..4021694079141.7683322-CDS-S-dermatodea_contig1309:306..402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1309 307..402 +
1622924273.108639-CDS-S-dermatodea_contig1309:3609..36751622924273.108639-CDS-S-dermatodea_contig1309:3609..3675Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1309 3610..3675 +
1694079141.7784762-CDS-S-dermatodea_contig1309:3609..36751694079141.7784762-CDS-S-dermatodea_contig1309:3609..3675Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1309 3610..3675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1309.1853.1prot_S-dermatodea_contig1309.1853.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1309 307..3675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1309.1853.1

>prot_S-dermatodea_contig1309.1853.1 ID=prot_S-dermatodea_contig1309.1853.1|Name=mRNA_S-dermatodea_contig1309.1853.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
QHARRRRGRAVGYLQHLASARFATRRDVLESTVGRALRAVDPRLKADWMR
WVED
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mRNA from alignment at S-dermatodea_contig1309:307..3675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1309.1853.1 ID=mRNA_S-dermatodea_contig1309.1853.1|Name=mRNA_S-dermatodea_contig1309.1853.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3369bp|location=Sequence derived from alignment at S-dermatodea_contig1309:307..3675+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCACGCGAGGAGAAGGAGAGGCCGGGCTGTTGGATACCTTCAGCATCT
GGCCTCGGCGAGGTTCGCCACTCGGCGAGATGTCCTGGAGTCCACAGTAC
CCCGAAGTCGCACATATATATATACAAGTACAAGTATACATATGTATGTA
TGTATAACAGGAACCATTGGTACTTCCGACACATATGGCATTGTGGTATG
TTGCTAGGGGAGCTGGAGAGGCCGCCACCAAAGGAAGGGGACGCGGAGAG
GGTGGATCCCAGGGGGCAGGAGAAGCAATGGTCCACGTGCATCAACAATG
GTCTCGAGGCGTTTGGGATAATCAGCGACTGGAAAGAGGCAGCGAAAAAC
GCGGCCCGTTGGTGCGAGACAGTGAAGGACCGGGCGGAAACGTACATGAC
AGAGTGTCGTGAGGCGGAGAAAGCGAAGGCCGACGCTCGTCACGCGAAGG
AGGTCGCGGAAAAGGCCAATTTGGCGGAATTTTACTCGGCGGTGCCGCCT
GGGGTAACGGAGAAACAGGCGATCGACTTCAGGGGGGGTTTCAATATCCC
GTCCCGGGTTCTGGTTCTGCCCCCGCCCCCCGAAGCGACAATGCCAAGGC
CGGAACGCGAGGGCCAGCAAGGCCAGATCGGAAAAAAGCACGGTCTTGAT
GTCGAAGCTGACCGCGAGGGCAGAGGCTAGAGCGGAGGAGAGGGCGCGAG
TAGCGCCGCATCAAGCAGCGGGACTTTGAGGTTCTGAGGGTCGGGAACGT
GGGGGGCGGGGGCGAGCGGGGGCGAGGGAGGCTGTGTGTTCGTCTTCGTT
TCGTATTAGCTTCTGGCTCTCCTTCTTTTTTCGAGTTCATACTTCGAGCC
ACGGGGGACGGCGCCTGGGGAACGGGAGATGAGAGAGACTCGGAGTGGGT
TTTTGCTGTGCCTCTGCCCTTCCTTTGTCTGTCTTTTTGTTTGTTCTTTC
TCATCGGCCTGGGCTTCCACTCTCACTTCCCGCGCTCGTTGCTGAAGGTT
TGTCTTTCTTTTGCATGCGTAACCTTAGTCTATTCTATTTTTGTTCGCGC
AACGGTTGCCAGATCCGCGGGTGCGCCGAGCCCTCCCTGCTGTAGGAGAG
GGGATCGTTCTTCTTCTTTCTGTTTTTGTTTTGTTTTGGTTTTTTGTTTT
GTTTTTTTGCCAAGTTCCGAGGCATGCCCCCTCTGTCTCCGGGAGTTAGT
TTGTGTCAATTCCTTCTTTGTATGTACTATATAGTAGGTATTTCCGTAGG
GTTTTTTCTCGATCTCTCGGTTTTTCTCATCTGACAATGAGCGGGATCGG
CAACCATTGGTGGGCCGGTCGGTTGTACTCCGTATGTGTGATAGTAATAA
TAATGTATTTGTCATCGTGCGAATCCACAATGAGCTGTTAGCCGCTTGTG
GGCGCTCACGGGCACTCCATGATCATTGAGTTGTTACTGTAGCGCATGAG
ATAGTATCATGGGTGAAGCCTACGTATGCCATACAACCTTGCCGGTAATC
CGGGTCTTGCATTGTCTACGTTGTCAGTCGTAGGCGGTCAGGGGTGATCC
ACGAGACGTGACGAGACATGCATGTAATATAATATTGCCCTGAGGTTTCC
TTCCAATGTCAGACTATCATGGGTGATGACAAAGCCCATGATACACCATG
ATGAGTGCCGGTAGGTGCGTGATGGAGAAGAAAAGCAATTCATGAGCGAC
CACAGGTGACCCACAGGTGCAAAATGTGAGCTCCCCACGGGCCGTACAGC
ATATATGTGGGAACTACATCGGCTATGACTAATAAATTATATCGTCAACA
CTGAAGCTTCCGCAGGGGGGTTGTTGAACCTAGTGCATGTGATAGTTGTA
GAGGGAAGGCGATTCTCTACGTGATCACGCCTGTGTAGGTTCAGGGGCGA
AAAACAGAGGTATCGTGATCCGCATGGTGAACCTATTATGAAGGTGCAAC
AGCAAGTACACTTGTCCATGACCTATTCGTGTCCCTACTGCAGAGTCACC
CCACGTGGTTTTCCTATGCAAAATCACGAATATCGATGGATGCCCTATAA
TAACATTGCTGTAACAATAACCTTCCAATCAATGTAAAAACAATGGAGCA
AAAAAGCAGTGATGTCGGTTACGGCGTTACGCGTAACTAGACGTGACAAA
TGTTGGACGTACGTAACTTTTATTTTTGACGTAACTCAACAAGGGGCCCC
GTGGATCGCATACCCCCCCCCTAAAGGGGGCCCCGTTGGGACACACACAC
GTCTGGCTGCTGCTGCACACGACACACTACACACGCCCAGCATACAGCAC
ACACAGCACACAACCCCAACGGCAGAAGCTCACACCCATGGCTGAGGGGG
GCTCCTCCTCATGGGGATCGCTCGTGCCTCAGGCAGCACAGGAGAAAGGT
GGTCGTGCAGGGCTGCTCACGTTTGTAAATGTATCGAGAGCAACCTCAGC
CCACGCGACCACGCGTGTCAAATGTAAGGCATGCGGTTTAGACTTTGCAG
CCACCAAAGAAAGGCTGGCGGCTCACTTCGCAGTCCAAGACCAATATGAA
CGCAGAGGGGCTTTTTTAGGGGGCATTGTGAGGGTACAGTGGAAACCTGG
GGATGCTTCATTTTCGTCCCCGTTTTTTTTACGTAACTTACGTACGTAAC
TAAAGTTCCTGTTTTGAGGCTGTTACGCGTACGTAACCAACTCTGATCTG
CCGTAGCCGACATCACTGCAAAAAAACGCCTTGCTTGCTGTTTATCTGCG
ACGACACCCTGGACTCCCACGGGCACTCAACACTACACGCAATAAGACGC
TGAGGTAATAGGTTACCCACGGGAATCCACGGGCCCCCGTCGGTGACCCA
CACAAACCCATGGTTCATCCGTGAAGCACTCGTAATTACGACCTCATGGC
CCGCCGCCGGATTGTTTCATGCTCACGCTATCCTCTAGATCGCGCCACAC
CTCTATTGTAGGATTCCTGACGAAGACTGCACATTCGTGCGGATAAGCCC
TTGCCGTACGAAGTGACGGGTCGGTTTTCCTAGAGGTTATCTTGCAGGGC
GTATTTGCACTGGGCTATCACGCCCGAAGCCGCACGCGTTCGATCCTTAA
ATGTATATACACATCGGAGCAGCAGCGCAATAACTTGAACAACTGCACGA
TGATAAGGATATGACGAAAAACGAACAAGAGAGGAGGCTGTAACGATATA
TAAATATAAGTTTTGTGGACACCCTGTGGTCTAATATCGCCTACCGCATT
CCATGAAGACTTTGCTGTGTGCTCCTTCCCTTTCCAGAATTCTGACCAAC
CAGGTGGGTCGAGCGTTGCGCGCCGTCGACCCTCGCCTGAAAGCCGACTG
GATGCGATGGGTCGAGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1309:307..3675+

>mRNA_S-dermatodea_contig1309.1853.1 ID=mRNA_S-dermatodea_contig1309.1853.1|Name=mRNA_S-dermatodea_contig1309.1853.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig1309:307..3675+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCACGCGAGGAGAAGGAGAGGCCGGGCTGTTGGATACCTTCAGCATCT
GGCCTCGGCGAGGTTCGCCACTCGGCGAGATGTCCTGGAGTCCACACAGC
ACGCGAGGAGAAGGAGAGGCCGGGCTGTTGGATACCTTCAGCATCTGGCC
TCGGCGAGGTTCGCCACTCGGCGAGATGTCCTGGAGTCCACAGTGGGTCG
AGCGTTGCGCGCCGTCGACCCTCGCCTGAAAGCCGACTGGATGCGATGGG
TCGAGGACGTGGGTCGAGCGTTGCGCGCCGTCGACCCTCGCCTGAAAGCC
GACTGGATGCGATGGGTCGAGGAC
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