mRNA_S-dermatodea_contig13075.1851.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13075.1851.1
Unique NamemRNA_S-dermatodea_contig13075.1851.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: A0A6H5JXW2_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW2_9PHAE)

HSP 1 Score: 401 bits (1030), Expect = 2.030e-134
Identity = 210/300 (70.00%), Postives = 234/300 (78.00%), Query Frame = 1 
Query:   19 MDLLITKPEHSLVSQSRDASFHPGCLDKRNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVGNVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFLDELPNTDDQLSAADIAEVVRRSIARLVTAVARFTR-PCPQSHSTPSSSSPANGAATNEQGSLGASTAPTPTQGGVAGGLGASSSSSSTARGSPATPPMSLNFCVTDGRHIVCSRYRNHARQDPPSLFVLSGAGFACDKDGSCLRLTA 915
            MD+L+TKPEHSLV QSRDASFHPGC DKRNIRVN DGFG+AWY P+RI EGGCVVKFPTPAWS+ NLLNIAKFVESGLVFAHVRAA DGA LVGNVNHENTHPFK KRYTFMHNGGIPGF  MKRQLL+ LGDEAY  IEG+TDSE+CFA+FLDELPNT DQLSA +I++V+RR+IAR+V+AVA  +  PCP         +P+        G  G  T   P    V GG  AS+          A P MSLNFCVTDGRHIVCSRYR+HARQ+PPSLFVL+GAGFACD+ G CLR TA
Sbjct:    1 MDVLVTKPEHSLVFQSRDASFHPGCADKRNIRVNGDGFGIAWYTPRRIEEGGCVVKFPTPAWSNTNLLNIAKFVESGLVFAHVRAASDGAVLVGNVNHENTHPFKYKRYTFMHNGGIPGFARMKRQLLAQLGDEAYLTIEGSTDSELCFAYFLDELPNTGDQLSAQEISQVLRRTIARIVSAVASLSASPCPXXXXXXXXXAPST------SGHDGGPTTSLPDAASVRGGSSASA----------AAPAMSLNFCVTDGRHIVCSRYRSHARQNPPSLFVLAGAGFACDEAG-CLRQTA 283
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BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 7.030e-127
Identity = 208/319 (65.20%), Postives = 230/319 (72.10%), Query Frame = 1 
Query:    1 MGEAIPMDLLITKPEHSLVSQSRDASFHPGCLDKRNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVGNVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFLDELPNTDDQLSAADIAEVVRRSIARLVTAVARFTRPCPQSHSTPSSSSPANGAATNEQGSLGASTAPTPT-------------QGGVAGGLGASSSSSSTARGSPATPPMSLNFCVTDGRHIVCSRYRNHARQDPPSLFVLSGAGFACDKDGSCLRLTAP 918
            MG ++PMD+L+TKPEHSLV QSRDASFHPGC DKRNIRVN DGFG+AWY P+RI EGGCVVKFPTPAWS+ NLLNIAKFVESGLVFAHVRAA DGA LVGNVNHENTHPFK KRYTFMHNGGIPGF  MKRQLL+ LGD AY A+EG+TDSE+CFA+FLDELPNT DQLSA +I++V+RR+IAR+V+AVA                            SL AST P                 G                    A P MSLNFCVTDGRHIVCSRYR+HARQDPPSLFVL+GAG ACD+ G CLRLTAP
Sbjct:    1 MGASVPMDVLVTKPEHSLVFQSRDASFHPGCADKRNIRVNGDGFGIAWYTPRRIEEGGCVVKFPTPAWSNTNLLNIAKFVESGLVFAHVRAASDGAVLVGNVNHENTHPFKYKRYTFMHNGGIPGFARMKRQLLAQLGDAAYLAVEGSTDSELCFAYFLDELPNTGDQLSAQEISKVLRRTIARIVSAVA----------------------------SLSASTCPPXXXXXXXXXXXXXGHDGXXXXXXXXXXXXXXXXXXXAAAPAMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLACDEAG-CLRLTAP 290
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BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: A0A482RVP5_9ARCH (Class II glutamine amidotransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVP5_9ARCH)

HSP 1 Score: 158 bits (399), Expect = 3.620e-44
Identity = 84/164 (51.22%), Postives = 110/164 (67.07%), Query Frame = 1 
Query:    4 GEAIPMDLLITKPEHSLVSQSRDASFHPGCLDK---RNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVGN---VNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFL 477
            G+ + +  L+T P +SL+ QSRDA++HPG  DK   RNI VN DGFGV WY  + +++GGC  KF TPAWS+ NL +I + V S LV AH+RAA  G   +     V+HEN HPF+  R+TFMHNGGIP F  +KR L +LL +  +  I+G+TDSE  FA FL
Sbjct:    9 GKPMLIGDLVTNPSNSLIYQSRDAAYHPGVTDKTHRRNILVNGDGFGVCWYG-ENVSKGGCCFKFVTPAWSNGNLRSIGEHVASHLVCAHIRAASSGHDPLHERVAVSHENCHPFRYGRFTFMHNGGIPYFARIKRPLQNLLHEAFFSEIKGSTDSEHIFALFL 171
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BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: A0A7S0DVN1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DVN1_9EUKA)

HSP 1 Score: 148 bits (373), Expect = 5.290e-40
Identity = 81/168 (48.21%), Postives = 104/168 (61.90%), Query Frame = 1 
Query:    4 GEAIPMDLLITKPEHSLVSQSRDASFHPGCL-------DKRNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVGNVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFLDEL 486
            G  I +  L+  PE+S+++QSRDA F PG         DKRN RVN DGFGVAWY   R  +  C+ K   P+W   NLL +A  VES  +FAHVRAA  G A V     +N HPFK K +TFMHNGGI  F  +KR++ +L+ DE +E+++G+TDSE  F  FL  L
Sbjct:    7 GPPINLSTLVLYPENSIINQSRDAQFLPGLTYENQAITDKRNNRVNADGFGVAWYTKGR--KNACLYKSTQPSWGDSNLLELADHVESPTIFAHVRAASMGVASV-----QNCHPFKWKSFTFMHNGGISEFLKIKRRIQNLMEDEFFESLQGSTDSENIFYLFLSVL 167
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BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: A0A7C5ABP5_9BACT (Class II glutamine amidotransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5ABP5_9BACT)

HSP 1 Score: 143 bits (360), Expect = 3.280e-37
Identity = 82/186 (44.09%), Postives = 111/186 (59.68%), Query Frame = 1 
Query:    4 GEAIPMDLLITKPEHSLVSQSRDASFHPGCLDKRNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVGNVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFLDELPNTDDQLSAAD-IAEVVRRSIARLV 558
            G  IP+D +IT+P HS++ QS+D++        R+  VN DGFG+AWY P      G V +   PAW++ N+ +I++   SGLV AHVRAA         V   N HPF   RY FMHNGGI  F +++R+L+  L D AYE +EGTTDSE+ FA FLD L      L A+D IA  + ++I  +V
Sbjct:    9 GPPIPLDHIITRPAHSIIQQSKDSTL-------RSEPVNGDGFGMAWYVPSVSPHPG-VFRSIRPAWNNRNVRSISRVTTSGLVAAHVRAASPELP----VADVNCHPFTFGRYAFMHNGGIARFRSLRRRLVDCLSDAAYEGVEGTTDSEIAFAMFLDRLDVQPSDLPASDRIANAIEKTIHDIV 182
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BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: F0Y652_AURAN (Glutamine amidotransferase type-2 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y652_AURAN)

HSP 1 Score: 140 bits (352), Expect = 1.160e-36
Identity = 78/190 (41.05%), Postives = 105/190 (55.26%), Query Frame = 1 
Query:    4 GEAIPMDLLITKPEHSLVSQSRDASFHPGCLDKRNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWS----SPNLLNIAKFVESGLVFAHVRAAFDGAALVGNVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFLDEL--PNTDDQLSAADIAEVVRRSIARL 555
             E I +  L+    HS+V QS    FHP C DK N+R+N DGFG+ WY  +       + +  TPAWS    + NL  +A  V S   FAHVRAA  G+     V+ ENTHPF+  R  F HNG I GF  +KR+L+  L D     ++G+TDSE CFA  L +L  P+  D+   A++   V R++A L
Sbjct:   10 AEPIVLADLVLNSHHSIVRQSFSGGFHPDCSDKNNMRMNADGFGLGWYGLRESGASAAIFRSITPAWSCAWSNRNLRELAGVVSSRCCFAHVRAATPGSV----VSEENTHPFRYGRLLFQHNGHIEGFARVKRRLIEKLPDGLLAWVDGSTDSEYCFALLLAQLERPDRADRFPVAELEFAVLRTLAIL 195
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BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: A0A7Y5S245_9BACT (Class II glutamine amidotransferase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7Y5S245_9BACT)

HSP 1 Score: 135 bits (340), Expect = 3.160e-34
Identity = 78/195 (40.00%), Postives = 112/195 (57.44%), Query Frame = 1 
Query:    1 MGEAIPMDLLITKPEHSLVSQSRDASFHPGCLDKRNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVGNVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFLDELPNTDDQLSAADIAEVVRRSIARLVTAVARFTRP 585
            +G  +P+  L+T+P +SL++QS D        + R   +N DGFGVAWY P+   E   + +  +PAWS+ NL  +A+  +SG V AH+R+A  G      V   N HPF + R  FMHNG + GF  ++R+LL+ L DEA+ AIEG+TDSE  FA FLD L        A  +AE +R ++ R++   A    P
Sbjct:    8 LGPPLPLSALLTEPSNSLINQSYDD-------EDREEPLNGDGFGVAWYRPEAGPEPA-LFRSISPAWSNRNLQQLARVTQSGCVLAHIRSATQGLL----VAESNCHPFVHGRLAFMHNGDLAGFSGLRRRLLADLSDEAFAAIEGSTDSEHIFAVFLDMLLQARAADPAEALAEALRAALRRVLALAAGVRDP 190
[Close]
BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: A0A0H5R783_9EUKA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R783_9EUKA)

HSP 1 Score: 133 bits (335), Expect = 3.680e-33
Identity = 72/153 (47.06%), Postives = 92/153 (60.13%), Query Frame = 1 
Query:   28 LITKPEHSLVSQSRDASFHPGCLDKRNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVGNVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFLDEL 486
            LIT+PEHS++ Q+             N  +N DGFG+ WY PK I    CV     PAW++ NL  +   + S L+FAHVRAA  G+     +   N HPF   RY FMHNG I  F  +KR+L++ LGD+A++ IEGTTDSE CFA FLDEL
Sbjct:   20 LITRPEHSIIKQAYQCRERQEGTHLPNA-LNADGFGIGWYTPK-IDWTPCVFTSTLPAWNNRNLNRLCAKISSSLIFAHVRAAGQGSP----ITETNCHPFVAGRYMFMHNGHIAEFSKLKRKLVASLGDKAFQIIEGTTDSEHCFAVFLDEL 166
[Close]
BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: F2J3M2_POLGS (Glutamine amidotransferase, class-II n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) TaxID=991905 RepID=F2J3M2_POLGS)

HSP 1 Score: 132 bits (331), Expect = 3.990e-33
Identity = 77/190 (40.53%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:    1 MGEAIPMDLLITKPEHSLVSQSRDASFHPGCLDKRNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVGNVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFL----DELPNTDDQLSAADIAEVVRRSIARLV 558
            +G  IP++ +I KP HSL+ QS+DA        +  +RVN DGFG+AWY    + E G + K   PAWS  NL ++ + V S L  AHVRAA  GA      + +N HPF + R+ FMHNGGI  F  ++R + +L+GD+ Y A  GTTDSE+ F   L    DE P+   + + A + ++  R   R V
Sbjct:    8 LGTEIPLENIIAKPRHSLLVQSQDAQ-------EAKLRVNGDGFGIAWYG--HLPEPG-LFKDVLPAWSDTNLPSVCRLVRSRLFLAHVRAATTGA-----TSRDNCHPFTHGRWAFMHNGGIGAFSAIRRDMEALIGDDYYAARRGTTDSELFFLMLLTNGLDEDPHGALETTLAQVLDIAARRTDRSV 182
[Close]
BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Match: A0A654DZL9_9BACT (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654DZL9_9BACT)

HSP 1 Score: 130 bits (327), Expect = 2.600e-32
Identity = 74/181 (40.88%), Postives = 107/181 (59.12%), Query Frame = 1 
Query:    4 GEAIPMDLLITKPEHSLVSQSRDASFHPGCLDKRNIRVNCDGFGVAWYNPKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVGNVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTDSEVCFAFFLDELPNTD-----DQLSAADIAEV 531
            G+ I +  LIT+P HSL+ QS +A        +R+  +N DGFG+ WYN   I+      K  TPAW++ NL+ +A+  ES  + AHVRAA  G      V+  N HPF  ++Y FMHNG I GF  ++R+++ LL DEA+E ++G+TDSE  F    DEL   D     DQ+S++ +A +
Sbjct:    9 GKPIRIGSLITEPTHSLIHQSFNAL-------ERDEPLNGDGFGLGWYNHS-ISNSPAFFKSVTPAWNNRNLIQLARITESTCIMAHVRAATQGLQ----VSENNCHPFSYQQYAFMHNGDIGGFHKIRRKIVQLLSDEAFEELKGSTDSEHFFCLVQDELKKRDTLPPHDQMSSSLMAAI 177
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13075.1851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXW2_9PHAE2.030e-13470.00Glutamine amidotransferase type-2 domain-containin... [more]
D8LKF2_ECTSI7.030e-12765.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482RVP5_9ARCH3.620e-4451.22Class II glutamine amidotransferase (Fragment) n=1... [more]
A0A7S0DVN1_9EUKA5.290e-4048.21Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7C5ABP5_9BACT3.280e-3744.09Class II glutamine amidotransferase n=1 Tax=Planct... [more]
F0Y652_AURAN1.160e-3641.05Glutamine amidotransferase type-2 domain-containin... [more]
A0A7Y5S245_9BACT3.160e-3440.00Class II glutamine amidotransferase n=1 Tax=Phycis... [more]
A0A0H5R783_9EUKA3.680e-3347.06Glutamine amidotransferase type-2 domain-containin... [more]
F2J3M2_POLGS3.990e-3340.53Glutamine amidotransferase, class-II n=1 Tax=Polym... [more]
A0A654DZL9_9BACT2.600e-3240.88Glutamine amidotransferase type-2 domain-containin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13075contigS-dermatodea_contig13075:695..4638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score394.4
Seed ortholog evalue4.7e-107
Seed eggNOG ortholog2880.D8LKF2
Preferred nameDUG3
KEGG rclassRC00408
KEGG koko:K01836,ko:K14262,ko:K18802
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
GOsGO:0003674,GO:0003824,GO:0004044,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006751,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0009056,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0019538,GO:0032991,GO:0034641,GO:0042219,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044424,GO:0044464,GO:0051186,GO:0051187,GO:0061672,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368
EggNOG free text desc.glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EggNOG OGsCOG0449@1,KOG1268@2759
EC5.4.2.3
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-16_002740.1
Exons6
Model size918
Cds size918
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13075.1851.1prot_S-dermatodea_contig13075.1851.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13075 695..4638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.9721165-CDS-S-dermatodea_contig13075:694..10841622924272.9721165-CDS-S-dermatodea_contig13075:694..1084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 695..1084 -
1694079141.6614568-CDS-S-dermatodea_contig13075:694..10841694079141.6614568-CDS-S-dermatodea_contig13075:694..1084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 695..1084 -
1622924272.9862573-CDS-S-dermatodea_contig13075:1866..19381622924272.9862573-CDS-S-dermatodea_contig13075:1866..1938Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 1867..1938 -
1694079141.674547-CDS-S-dermatodea_contig13075:1866..19381694079141.674547-CDS-S-dermatodea_contig13075:1866..1938Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 1867..1938 -
1622924272.9953885-CDS-S-dermatodea_contig13075:2481..26041622924272.9953885-CDS-S-dermatodea_contig13075:2481..2604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 2482..2604 -
1694079141.684342-CDS-S-dermatodea_contig13075:2481..26041694079141.684342-CDS-S-dermatodea_contig13075:2481..2604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 2482..2604 -
1622924273.0063448-CDS-S-dermatodea_contig13075:3270..34601622924273.0063448-CDS-S-dermatodea_contig13075:3270..3460Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 3271..3460 -
1694079141.6940148-CDS-S-dermatodea_contig13075:3270..34601694079141.6940148-CDS-S-dermatodea_contig13075:3270..3460Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 3271..3460 -
1622924273.0151176-CDS-S-dermatodea_contig13075:3984..40821622924273.0151176-CDS-S-dermatodea_contig13075:3984..4082Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 3985..4082 -
1694079141.7154748-CDS-S-dermatodea_contig13075:3984..40821694079141.7154748-CDS-S-dermatodea_contig13075:3984..4082Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 3985..4082 -
1622924273.0261571-CDS-S-dermatodea_contig13075:4593..46381622924273.0261571-CDS-S-dermatodea_contig13075:4593..4638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 4594..4638 -
1694079141.731879-CDS-S-dermatodea_contig13075:4593..46381694079141.731879-CDS-S-dermatodea_contig13075:4593..4638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13075 4594..4638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13075.1851.1

>prot_S-dermatodea_contig13075.1851.1 ID=prot_S-dermatodea_contig13075.1851.1|Name=mRNA_S-dermatodea_contig13075.1851.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=306bp
MGEAIPMDLLITKPEHSLVSQSRDASFHPGCLDKRNIRVNCDGFGVAWYN
PKRIAEGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALVG
NVNHENTHPFKNKRYTFMHNGGIPGFDTMKRQLLSLLGDEAYEAIEGTTD
SEVCFAFFLDELPNTDDQLSAADIAEVVRRSIARLVTAVARFTRPCPQSH
STPSSSSPANGAATNEQGSLGASTAPTPTQGGVAGGLGASSSSSSTARGS
PATPPMSLNFCVTDGRHIVCSRYRNHARQDPPSLFVLSGAGFACDKDGSC
LRLTAP
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mRNA from alignment at S-dermatodea_contig13075:695..4638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13075.1851.1 ID=mRNA_S-dermatodea_contig13075.1851.1|Name=mRNA_S-dermatodea_contig13075.1851.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3944bp|location=Sequence derived from alignment at S-dermatodea_contig13075:695..4638- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGAGGCCATCCCGATGGACCTTCTCATCACAAAACCAGAGGTAAG
GTGTACGTAAGAACAACGGCACCCGCGATATAAACTCGCAAACCTGTGCA
CTTGTGTCATTGCATGCTCACTATCGCAAATACACAGCCTTTCGCGATGT
CCACACCTGTGCCAACCAGGCGTAGCCTGGCGGATACGCAAACAGACACA
AATCGAAAAGGCTAGCGGAGAAAGAGGCTGTTTTACCACATGGTTGCCCG
GTTTTTGTCACCCTAGAACAATTTGTTGTTTCCTCGCGACTAAACCCCAG
AGCAGCGTTGGCCGCTACCGTATCACCTACAGTCCCTATGACGGTGCACG
AGCTCACCAATTGGTAGGTGCTGCCTTCATCCTGGTTTAGCTATACGAAA
AAACAAAAATGGCTCGGTAACCTTGTACTAACTTCCCACGCTTGCTGCCG
ATTGGCCTCGCCCCTAGTTTTCTTATCAACTCTGGTGCGTCTCCCCGCTC
TCCGGCCCTCCGTATTTCATCGCCATCACGATCGCCGTCCGTGTGGCGGT
GAACAGCACTCGTTGGTTTCGCAATCAAGAGACGCCTCTTTCCATCCGGG
GTGCCTCGACAAGCGGAACATACGCGTCAACTGCGACGGTTTCGGGGTCG
CCTGGTGAGGTCGAACCCCCCGGCCCGGGGGGCAGTCGCCGAAAACAACA
AGAAGAGCGAAAACCCGGCTAGTTGGACGCGTTTCGTGTGGAATATGATA
CACGCCCTGTGTGAAGCACGCCCTGTGTGAAGCATTCAAGCATTGCCGTT
GATATTATAGGAAAGCACTCTTGTTGTACTGTAAATTGGCGTGCTGTGAC
CGGTATCGTAATATTTTAATAGCGGCGTTTTCGTGTTCGCCAGAGTTGTC
TGCGTGACCTCAAGAGTATGTTTTGGAGCGTTCATTACAAAAACCGAATC
TGCGTTAAATCGGCATTGTTGCTGTTGCACCGGCTTGGTGTTGCAGGGCG
TCAAATCGTATGCTGTCACGAGGAGTAACTCTTCCCTGGGCGTTAGATGG
AACCGGTTTTTGTCATGCGGTTCCTGTCAAGGCGTCCTGCACCTCGCCAC
TTGCACCCTACGCCCCCAAATGGCATAGTCCCTTCAAAAATCAACATCCC
TTGTTTTTTTTGGCGTGCAACAAAACAGGTACAATCCCAAGCGAATCGCA
GAAGGGGGATGCGTGGTCAAGTTCCCGACCCCGGCGTGGTCCAGCCCGAA
CCTCCTCAACATCGCAAAGTTCGTCGAGTCCGGGCTGGTGTTCGCTCACG
TCCGCGCGGCGTTCGACGGGGCCGCATTGGTGGGAAATGTCAACCACGAG
AACACACACCCTTTCAAGGTACGACAGGAAGTACGACCCCGCGTGCGAAA
TATTCGCACGCGGTCAAGGGCGAGGGTGCTGTGCGAACGCGCAGCGGGGG
CGTTTCTTGTGCTTGATTGCTCCTCGCTGTCGTGAGCAAGCGGGCGTCAT
TTATCTTTCGTACGCGCGCGTTTCGATGGCGGGGTCGTCGGTACCCGAGC
GTTTTTTGCTTTGCGTCAGGCAGGGCTGAAGGCGTGTTTGGATGTAGGCT
AAGGTTGGTGGTTATACGTGTGTTAACCGGCGTTCGGTAGCTCGATGCGT
CATTGCTACCTTCCTGTGTCGTGGTTTGTGATTCCTGCCATGCTGGCTGT
TGTTTTTCTCTTCCTCACGCTCGCGGGCAGCTTGTTTGCCTTCGCCCTCG
CAACACGCCGCGCTCATGAACCGTATGTTCGGACATGACCGCTTGGGAGG
TTCCCGCTGGCCCCTTGGGGCGGGGGGGGGGGGGCGTACTCATGGTTTGC
ATGCCTTAGCTGTTAGACCATTGACCACGCGTCCTCGAGAGGACGGAGCA
TGGGGGGGGGGTGTATATTTGCTTGTTCCTCGGACGTGCGCCACAACGCT
CCCCTACGCTCGCCCTGCATTATCTGCTCCTTGTCCACGCCGCCGCCACC
GCCGCCGCCCCCACCGCCGCTTGTACCTTTTCAGAACAAGAGGTACACAT
TCATGCACAACGGGGGCATTCCTGGGTTCGACACGATGAAGCGGCAACTG
CTCTCTCTGCTTGGCGATGAGGCGTACGAAGCCATCGAGGGCACCACGGA
TTCCGAGGTTTGATGGCGGTGTGTCCGGCTCGGACGTTGGCACGCGCGGA
TGGTGCACCAGTAGTGCGTGCGGTGCTTGTTTTTTGTCGCGTTTTTGTTA
TTATTATTCTTCGAGTTACCGCAGCAGCGGCCGCTCACGAGGAGGCACGT
TTCGCGCCGTCCGCCGTTGTTTCCTTCGCAGTGTAGATAAGTCGATATTT
TGTTTACAAGCTTCGCCAGTTAGTTGTCTACCGCAACGTCAGAATATCGA
GGCCGCCTTGGGGCGATTATGTGCGTGAGCGCCTTCATGCCATCTGCCAG
TCAAGACCCTGCCTCGGCCAGCGTCGCGATTGCCAGATAGTAGACGGCGC
CCCTTCCCGATATCCTATCAGCTTCTGGCTGTTGCTACGTCGGGAAAGAC
TAGCACCGGTATTTAGTTTCTCCGTTCGCTGCGTTAACAATTCCGACTAT
GTTGGGCGGGACGGAAAACTGCTATGTACGTTTTCGACTTGTGCTTCACC
GTTGCCCGCCCATCGTTTTCTTTGTGCGAACGCTGCGCTGCGCTGAACAG
GTTTGCTTTGCCTTTTTCCTGGACGAGCTTCCGAATACGGACGACCAGCT
TAGCGCGGCGGACATCGCCGAGGTGCGTGCGGGGGTAGCATTGTTTTGGA
TGACGAACGAGGATCTCACGCAGGCAGCATCATACCCTCCTACAGATTTA
CGAACAGGGGCCATGGTCTTGTGTGTCTCTTGGTGTGCATTGAACCACCT
GCGAGTGTGGAGGAATGCTGTCTTTGTAGTTGGCATTGCGTTTCCTTCAT
CCTCTGGTCGAGAATCGTCTATTTATGCACTTTTCCTGTACAGGTTATGT
CCACCTTTTGTTGATGTTGACCATGGAAGCCCCCCCCCCCGCCTTTTCGA
TCAGATCGCGTGTTTTGATAAGCCATATATGTTCAGATAGCGAGAAGGAC
TGACGGGGTATCACAACCTCACCGGCGGCGCGTGCTCCTCGGACTCTCCG
CCACCTCTGTCTCGACTGTTTTTCGCCGGCTAAAAACAAAATACGCTTGG
AATCCTTGCGAGATAATTCTTGCTCAAACATGTTCGATTTTTCACATGGG
GGCTCCGCTTCGCGGGCGCGTCCCCAGAATCATGGAGAGCGTGCACTTTT
GCGTCACGCAAAGGGCCTGTGCCGCACCGAAGCGCACATGTTGTCTCTAC
GATCTGCCCACGGCAAGAGGCCAAGCGTACATACGTACTGAGGCAATATC
TGCCCAATACACACGGAGTAGGCTAATCGCGAGCGGGCGAGACCGACAGA
AACAAAACGAAAGAAATCTCCCACACCCACTGACTGCGTCACGCGACGCC
CGTCCGCTCTCCCTTTTCCATCCGCCCGCTACACTGCGCTCCTCTCCTTG
TCAGGTCGTACGCCGATCGATCGCGCGGCTCGTCACCGCGGTTGCACGCT
TCACTCGGCCGTGCCCACAGTCCCACTCCACCCCTTCCTCCTCCTCCCCC
GCCAACGGCGCCGCGACCAACGAGCAAGGTTCTCTCGGAGCATCGACGGC
ACCCACACCCACCCAAGGCGGCGTGGCCGGTGGCTTGGGAGCGTCTTCTT
CCTCGTCTTCCACCGCGAGAGGGTCTCCTGCTACGCCGCCCATGTCTCTC
AACTTCTGCGTGACCGACGGGAGGCACATCGTGTGCTCACGGTATCGAAA
CCACGCGCGGCAGGACCCGCCCAGCCTGTTCGTGCTGTCCGGGGCCGGGT
TTGCTTGTGACAAGGACGGGAGCTGTCTGCGGTTGACCGCGCCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13075:695..4638-

>mRNA_S-dermatodea_contig13075.1851.1 ID=mRNA_S-dermatodea_contig13075.1851.1|Name=mRNA_S-dermatodea_contig13075.1851.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at S-dermatodea_contig13075:695..4638- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGAGGCCATCCCGATGGACCTTCTCATCACAAAACCAGAGATGGG
GGAGGCCATCCCGATGGACCTTCTCATCACAAAACCAGAGCACTCGTTGG
TTTCGCAATCAAGAGACGCCTCTTTCCATCCGGGGTGCCTCGACAAGCGG
AACATACGCGTCAACTGCGACGGTTTCGGGGTCGCCTGCACTCGTTGGTT
TCGCAATCAAGAGACGCCTCTTTCCATCCGGGGTGCCTCGACAAGCGGAA
CATACGCGTCAACTGCGACGGTTTCGGGGTCGCCTGGTACAATCCCAAGC
GAATCGCAGAAGGGGGATGCGTGGTCAAGTTCCCGACCCCGGCGTGGTCC
AGCCCGAACCTCCTCAACATCGCAAAGTTCGTCGAGTCCGGGCTGGTGTT
CGCTCACGTCCGCGCGGCGTTCGACGGGGCCGCATTGGTGGGAAATGTCA
ACCACGAGAACACACACCCTTTCAAGGTACAATCCCAAGCGAATCGCAGA
AGGGGGATGCGTGGTCAAGTTCCCGACCCCGGCGTGGTCCAGCCCGAACC
TCCTCAACATCGCAAAGTTCGTCGAGTCCGGGCTGGTGTTCGCTCACGTC
CGCGCGGCGTTCGACGGGGCCGCATTGGTGGGAAATGTCAACCACGAGAA
CACACACCCTTTCAAGAACAAGAGGTACACATTCATGCACAACGGGGGCA
TTCCTGGGTTCGACACGATGAAGCGGCAACTGCTCTCTCTGCTTGGCGAT
GAGGCGTACGAAGCCATCGAGGGCACCACGGATTCCGAGAACAAGAGGTA
CACATTCATGCACAACGGGGGCATTCCTGGGTTCGACACGATGAAGCGGC
AACTGCTCTCTCTGCTTGGCGATGAGGCGTACGAAGCCATCGAGGGCACC
ACGGATTCCGAGGTTTGCTTTGCCTTTTTCCTGGACGAGCTTCCGAATAC
GGACGACCAGCTTAGCGCGGCGGACATCGCCGAGGTTTGCTTTGCCTTTT
TCCTGGACGAGCTTCCGAATACGGACGACCAGCTTAGCGCGGCGGACATC
GCCGAGGTCGTACGCCGATCGATCGCGCGGCTCGTCACCGCGGTTGCACG
CTTCACTCGGCCGTGCCCACAGTCCCACTCCACCCCTTCCTCCTCCTCCC
CCGCCAACGGCGCCGCGACCAACGAGCAAGGTTCTCTCGGAGCATCGACG
GCACCCACACCCACCCAAGGCGGCGTGGCCGGTGGCTTGGGAGCGTCTTC
TTCCTCGTCTTCCACCGCGAGAGGGTCTCCTGCTACGCCGCCCATGTCTC
TCAACTTCTGCGTGACCGACGGGAGGCACATCGTGTGCTCACGGTATCGA
AACCACGCGCGGCAGGACCCGCCCAGCCTGTTCGTGCTGTCCGGGGCCGG
GTTTGCTTGTGACAAGGACGGGAGCTGTCTGCGGTTGACCGCGCCAGTCG
TACGCCGATCGATCGCGCGGCTCGTCACCGCGGTTGCACGCTTCACTCGG
CCGTGCCCACAGTCCCACTCCACCCCTTCCTCCTCCTCCCCCGCCAACGG
CGCCGCGACCAACGAGCAAGGTTCTCTCGGAGCATCGACGGCACCCACAC
CCACCCAAGGCGGCGTGGCCGGTGGCTTGGGAGCGTCTTCTTCCTCGTCT
TCCACCGCGAGAGGGTCTCCTGCTACGCCGCCCATGTCTCTCAACTTCTG
CGTGACCGACGGGAGGCACATCGTGTGCTCACGGTATCGAAACCACGCGC
GGCAGGACCCGCCCAGCCTGTTCGTGCTGTCCGGGGCCGGGTTTGCTTGT
GACAAGGACGGGAGCTGTCTGCGGTTGACCGCGCCA
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