mRNA_S-dermatodea_contig13071.1850.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13071.1850.1
Unique NamemRNA_S-dermatodea_contig13071.1850.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: D7FJL3_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.140e-99
Identity = 168/238 (70.59%), Postives = 191/238 (80.25%), Query Frame = 2
Query:    2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIVDSGSEDDWSD 715
            RDLSSPYSTKTVDSSNGLLLP+F EA GLLLLAGRGG G+KYYELS  D   ++ P   FCHE+KA GDPLSG+ALLPPQCL++  VEVARLLRLT TSVEPVS MLPRS D+K +FQD +YR VRSS PC  S +WL GG+   +E     SL P GM+PLSERP P +V+VPKAV+FRQ+MEQR++EEK AAD MAKMT LANQNAEYNPN SV   MGVDQ TI+DSGSE +WSD
Sbjct:  736 RDLSSPYSTKTVDSSNGLLLPMFCEATGLLLLAGRGGSGIKYYELS--DSGGTSAPSAQFCHEYKAEGDPLSGLALLPPQCLDVASVEVARLLRLTSTSVEPVSLMLPRSADMKGFFQDGIYRSVRSSTPCQTSAEWLSGGTPSVSEGGGLTSLRPEGMQPLSERPLPSDVAVPKAVIFRQQMEQREQEEKHAADTMAKMTTLANQNAEYNPNLSVA--MGVDQATILDSGSEGEWSD 969          
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A485L961_9STRA (Coronin n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L961_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.520e-34
Identity = 89/238 (37.39%), Postives = 127/238 (53.36%), Query Frame = 2
Query:    2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIVDSGSEDDWSD 715
            R+L  P +T T+D+S  +LLP + E++ ++ L GRG   +  YE+  G        +L  C      G P++  A+LP +C NI+ VEVARLL LT T++EP+SF LPR+  LK+YFQDD+Y  VR S PC  S  W  G + D        SL PPGM  LSER     V VPK V F+ + ++  +E+K   ++  ++  LA Q   ++     G     D+        ED W D
Sbjct:  681 RNLLDPLTTTTIDTSGSILLPFYDESSSVIYLVGRGDRSLLTYEIESG--------KLQPCSPFSFNGPPIAAAAVLPKRCCNIKDVEVARLLLLTKTTIEPISFSLPRAEKLKNYFQDDIYGVVRDSVPCQTSESWFSGENRDPRVV----SLQPPGMPLLSEREIEAPV-VPKVVDFKAQKQREDEEKKTRDEQFQRLHALAYQPTLHSQRNPRGNADNDDE--------EDGWDD 897          
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A7S2D6J4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6J4_9STRA)

HSP 1 Score: 123 bits (309), Expect = 7.470e-31
Identity = 77/197 (39.09%), Postives = 108/197 (54.82%), Query Frame = 2
Query:  128 YELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIV-DSGSEDDWSD 715
            YEL  G +      +L  C +   AG+PL  +A+LP Q  ++  VE  R+LRLT T+V+P+SF+LPR+  LK +F DDVY P RS      +  WL G ++          L P G+ PLSERP      V KA V RQ++ +  KE+K   D   ++ Q+A Q ++Y    S G V GVD  T+  D  S+ +WSD
Sbjct:    2 YELGSGCR------QLTSCTDMMVAGEPLCSIAMLPKQSCDVMSVETMRVLRLTTTTVDPISFILPRADHLKQFFMDDVYVPARSRAMSQEAAGWLSGANV----APILEELKPEGVAPLSERPVEAP-KVSKAQVTRQQIAETAKEDKKNVDNFNRLQQMAVQRSKYQGLGSKGAVKGVDAATLQSDDVSDSEWSD 187          
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A1V9YP86_9STRA (Coronin (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YP86_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.540e-26
Identity = 76/239 (31.80%), Postives = 121/239 (50.63%), Query Frame = 2
Query:    2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTS-VEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIVDSGSEDDWSD 715
            R+L  P  T T+D+S   LLP++  ++ ++ L GRG   +  YE+      D+  P +  C      G P+S  A LP    NIE VE+ R+L LT  S ++P+SF LPR+  LK YFQDDVY  + ++ P L + +W  G    +    +  +L P GM  LS++P    + VPK + F+   ++  +E+K+  ++  ++  LA     Y P+      +  D     D  S+  W D
Sbjct:  738 RNLLDPLVTTTIDTSGSALLPLYDASSNVMYLVGRGDRTILSYEI------DTTKPAMLPCSIFSFQGPPISSAAFLPKPMCNIEDVELNRMLLLTSGSTIDPISFYLPRAEKLKSYFQDDVYGDIPTNTPTLSAEEWFSG----ETSMPNFTTLQPEGMPKLSDKPPDAPI-VPKVIGFQARKQKELQEQKEKDERFERLHSLA-----YQPSLHANATLKQD-----DDSSDGGWDD 955          
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A5D6XWN9_9STRA (Coronin n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWN9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.590e-25
Identity = 81/238 (34.03%), Postives = 129/238 (54.20%), Query Frame = 2
Query:   17 PYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIV-----DSGSEDDWSD 715
            P + +T  SS  +  P++ E++ LL L G G   V+ +E+     + +A P L F +   A   P+SG ALLP    ++  VEV RLL LTP+ V+ VSF LPR+  L+ +FQDDVY  VR+++P L + +W  G +          SL P  M PLS++P  V  + PK + F+  + +  +E++  A++  ++  LA+Q + ++  +  GV  G  Q         +S S+DDW D
Sbjct:  809 PVTVETTASSV-VHYPLYDESSRLLFLVGLGDRHVQSFEIDAA--AAAAHPNLPFAY---AGQSPISGAALLPKALCDVRRVEVDRLLLLTPSVVDRVSFSLPRTDKLRAFFQDDVYGDVRAAQPALAAAQWFAGENA----APILESLRPNDMVPLSQKPKDVVQARPKTLEFQDRIRKEDEEKRRKAEQFERLNVLASQPSLHSVTK--GVAAGGHQSDAATAAARESDSDDDWDD 1034          
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A8K1CHH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHH7_PYTOL)

HSP 1 Score: 116 bits (290), Expect = 2.610e-25
Identity = 80/244 (32.79%), Postives = 127/244 (52.05%), Query Frame = 2
Query:    2 RDLSSPYSTKTVDSSNG---LLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSAL--PELHFCHEHKAAG-DPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIVDSGSEDDWSD 715
            R+L  P  T  +D +N       P + E++ +L + G G   +  YEL   D S+ +   P +H      A G +P+SG  +LP    ++  VE+ R+L L   +VE VSF LPR+  L++YFQDD+Y PVR+S P L +++W  G  +         SL PP M PLSE+P   E    K+  +R + E+ ++E++  A +  ++  LA Q + ++  +  G V         D+ S+DDW D
Sbjct:  841 RNLVDPLKTTALDCANDSSTTAYPFYDESSRVLFIMGLGARHIWSYELDFKDTSEGSKSSPVVHANLPFVAQGAEPISGAVVLPKALCDVRQVEIDRVLLLRKQTVERVSFTLPRADRLREYFQDDIYGPVRASRPSLSASQWFAGEEV----VLEYDSLRPPDMVPLSEKPVETERRSSKSEYYRAKWEEEEREKQLKAAQYERLQSLAAQPSLHSKYQPQGQVRA-------DNDSDDDWDD 1073          
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: UPI000644F445 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F445)

HSP 1 Score: 108 bits (270), Expect = 3.770e-23
Identity = 54/148 (36.49%), Postives = 84/148 (56.76%), Query Frame = 2
Query:    2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAEC 445
            R+ + P +T ++DS++GLL+P F     +L LAG+G   ++YYE+       S  P  H+  E K A  P  G+  +P +  N+   E+AR L++TP++VEP+SF +PR  D+   FQDD+Y    + EP L S  W  G + +   C
Sbjct:  249 RNFTDPLTTTSIDSASGLLMPFFDADNSILYLAGKGDGNIRYYEMV------SEAPYFHYLSEFKTAS-PQRGICFIPKRACNVSECEIARALKVTPSTVEPISFRVPRKSDI---FQDDLYPDTYAGEPVLTSQAWASGSNAEPKTC 386          
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A2R5GDI9_9STRA (Coronin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDI9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.420e-23
Identity = 88/260 (33.85%), Postives = 121/260 (46.54%), Query Frame = 2
Query:   17 PYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELS-------EGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTK-WLQGGSLDDAECESRRSLCPPGMKPLSER-PAPVEVSVPKAVV----FRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPN-------------RSVGVVMGVDQPTIVDSGSEDD-WSD 715
            P +T  V      L P+  E  G+++L GRG      YE+        + +   S+  + H C E  A GDP + VAL P +  ++ G E AR+LRLTP S+EPVSF +PR+ DL  YF DD+Y   R+ E     T+ WL G + D        SL   G K  S R P     S+ +A      F+Q+  +    +K   D   +M  +A Q+  YNPN             RS+GV   VD+  I     EDD W D
Sbjct:  731 PLNTTKVGQGATALEPLLVEDNGVVILTGRGENTFHVYEIETLTRAVVKPEHCGSSPLKPHQCQEFLARGDPTTAVALAPRRVCDLGGAEWARVLRLTPNSLEPVSFTIPRASDLASYFADDIYPDARTGEAASTDTEAWLAGQNFDPV----LSSLNTSGAKTFSSRDPEEAHASLKRAQANTHRFKQQKAEEDARQKAQDDVFKRMQFMAVQHEAYNPNLSSGKAAVPQAIARSLGVA--VDEEHIDTGDVEDDEWDD 984          
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: COROA_DICDI (Coronin-A n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=COROA_DICDI)

HSP 1 Score: 108 bits (269), Expect = 5.030e-23
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 2
Query:    2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLD 433
            R  ++P S + VDS++GLL+P +     +L LAG+G   ++YYEL   D+S    P +HF  E K+A  P  G+  LP +CLN    E+AR L++TP +VEP+SF +PR  D+   FQDD+Y    + EP L + +W+ G + +
Sbjct:  247 RAFTTPLSAQVVDSASGLLMPFYDADNSILYLAGKGDGNIRYYELV--DES----PYIHFLSEFKSA-TPQRGLCFLPKRCLNTSECEIARGLKVTPFTVEPISFRVPRKSDI---FQDDIYPDTYAGEPSLTAEQWVSGTNAE 380          
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: D3B210_POLPP (Coronin n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B210_POLPP)

HSP 1 Score: 104 bits (260), Expect = 8.800e-22
Identity = 52/148 (35.14%), Postives = 85/148 (57.43%), Query Frame = 2
Query:    2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAEC 445
            R  + P +T T+DS++GLL+P F     +L +AG+G   ++YYE+       +  P  ++  E K+A  P  G+  +P + +N+   E+AR L++TPT+VEP+SF +PR  D+   FQDD+Y    + EP L +  W  G + +   C
Sbjct:  248 RTFAEPLTTVTIDSASGLLMPFFDPDNSILYMAGKGDGNIRYYEMV------NEAPYHYYLSEFKSA-TPQRGICFIPKRAVNVSECEIARALKVTPTTVEPISFRVPRKSDI---FQDDLYPDTYAGEPVLDAAAWAGGANAEPKTC 385          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJL3_ECTSI1.140e-9970.59Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3... [more]
A0A485L961_9STRA4.520e-3437.39Coronin n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
A0A7S2D6J4_9STRA7.470e-3139.09Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1V9YP86_9STRA5.540e-2631.80Coronin (Fragment) n=1 Tax=Thraustotheca clavata T... [more]
A0A5D6XWN9_9STRA2.590e-2534.03Coronin n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
A0A8K1CHH7_PYTOL2.610e-2532.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000644F4453.770e-2336.49hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2R5GDI9_9STRA4.420e-2333.85Coronin n=1 Tax=Hondaea fermentalgiana TaxID=23152... [more]
COROA_DICDI5.030e-2340.28Coronin-A n=1 Tax=Dictyostelium discoideum TaxID=4... [more]
D3B210_POLPP8.800e-2235.14Coronin n=1 Tax=Polysphondylium pallidum (strain A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13071contigS-dermatodea_contig13071:331..4499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.5
Seed ortholog evalue3.2e-67
Seed eggNOG ortholog2880.D7FJL3
KEGG koko:K13886,ko:K18619
EggNOG free text desc.actin filament binding
EggNOG OGsCOG1985@1,KOG0303@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons6
Model size897
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13071.1850.1prot_S-dermatodea_contig13071.1850.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13071 1073..4320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.8640656-UTR-S-dermatodea_contig13071:330..4351622924272.8640656-UTR-S-dermatodea_contig13071:330..435Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13071 331..435 +
1694079141.5657136-UTR-S-dermatodea_contig13071:330..4351694079141.5657136-UTR-S-dermatodea_contig13071:330..435Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13071 331..435 +
1622924272.8741384-UTR-S-dermatodea_contig13071:1065..10721622924272.8741384-UTR-S-dermatodea_contig13071:1065..1072Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13071 1066..1072 +
1694079141.5871282-UTR-S-dermatodea_contig13071:1065..10721694079141.5871282-UTR-S-dermatodea_contig13071:1065..1072Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13071 1066..1072 +
1622924272.9329803-UTR-S-dermatodea_contig13071:4320..44991622924272.9329803-UTR-S-dermatodea_contig13071:4320..4499Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13071 4321..4499 +
1694079141.6508198-UTR-S-dermatodea_contig13071:4320..44991694079141.6508198-UTR-S-dermatodea_contig13071:4320..4499Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13071 4321..4499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.8827453-CDS-S-dermatodea_contig13071:1072..12681622924272.8827453-CDS-S-dermatodea_contig13071:1072..1268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 1073..1268 +
1694079141.6029563-CDS-S-dermatodea_contig13071:1072..12681694079141.6029563-CDS-S-dermatodea_contig13071:1072..1268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 1073..1268 +
1622924272.8917584-CDS-S-dermatodea_contig13071:1930..19911622924272.8917584-CDS-S-dermatodea_contig13071:1930..1991Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 1931..1991 +
1694079141.6121619-CDS-S-dermatodea_contig13071:1930..19911694079141.6121619-CDS-S-dermatodea_contig13071:1930..1991Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 1931..1991 +
1622924272.9021163-CDS-S-dermatodea_contig13071:2330..24341622924272.9021163-CDS-S-dermatodea_contig13071:2330..2434Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 2331..2434 +
1694079141.6210055-CDS-S-dermatodea_contig13071:2330..24341694079141.6210055-CDS-S-dermatodea_contig13071:2330..2434Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 2331..2434 +
1622924272.913109-CDS-S-dermatodea_contig13071:3411..35031622924272.913109-CDS-S-dermatodea_contig13071:3411..3503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 3412..3503 +
1694079141.6305704-CDS-S-dermatodea_contig13071:3411..35031694079141.6305704-CDS-S-dermatodea_contig13071:3411..3503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 3412..3503 +
1622924272.9227204-CDS-S-dermatodea_contig13071:4167..43201622924272.9227204-CDS-S-dermatodea_contig13071:4167..4320Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 4168..4320 +
1694079141.641067-CDS-S-dermatodea_contig13071:4167..43201694079141.641067-CDS-S-dermatodea_contig13071:4167..4320Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13071 4168..4320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13071.1850.1

>prot_S-dermatodea_contig13071.1850.1 ID=prot_S-dermatodea_contig13071.1850.1|Name=mRNA_S-dermatodea_contig13071.1850.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=202bp
MGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGV
EVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKW
LQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQ
KEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIVDSGSEDDWS
D*
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mRNA from alignment at S-dermatodea_contig13071:331..4499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13071.1850.1 ID=mRNA_S-dermatodea_contig13071.1850.1|Name=mRNA_S-dermatodea_contig13071.1850.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4169bp|location=Sequence derived from alignment at S-dermatodea_contig13071:331..4499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGAGATCTGTCCTCACCATACTCGACGAAGACCGTAGACAGCTCCAACG GGCTGCTGCTACCTGTTTTCTCCGAAGCAGCTGGTCTTCTGCTTTTGGCT GGAAGGTGGGGTGTGTTTTGTAGCAGCCCGAACGACGCCTCGCAACCCAC CTACCTGTACCTGTATGTTTTGTGTCTTTGTCTTCGTCTGCACGTGAACA TGGTTGCGAAATGCACGCGTGCCTCATGCTCGCCCCCTCGGATCCTGCTC AATTGCCACGCGCAGGCTCAAGCAGAAGGCGGCACAGCGCATGCTTTTGG GCGTATGCGTAGAAGGCAGTATCTGTTATCATAATAGGATCACGAAGGAC GGTAGTTAACAGGTCAAATTTCGGCACAAATCTCAACTTAGCGAAACGAA AGAGGCCGGAACGGTTGGGTATTCACAGTCGGTATTTGTGGTACAGGCCA GGCCAGGCCTATTATAGTGGTGACTATTGTTCATGATAGTTTGGTGCTAT TTGGGTATGATATGATAGTATTGTATTGTATTGTATTGTATTGTATGCAT GGTCGGAACAGTTGGGTATTTATGGTCGTGACATTTGGTCCTGATTACTT GATTACTTGATTATAGTGTACCTCACTAATAGTCACTTGGGGTGTTGATG TTGATGTGGAAGCCTTTCGCCATTATACCCTTACCCCCTCCTCACCCTAC CCTAACGCTAACCCTATGCATACCTCCGTGGGCAGGGGTGGCATGGGGGT AAAGTACTACGAGTTGAGTGAAGGCGATCAAAGCGACTCAGCCCTGCCCG AGTTGCACTTCTGTCATGAACACAAGGCCGCGGGAGACCCTCTGAGCGGT GTGGCGCTCCTTCCGCCCCAGTGCCTCAACATCGAGGGCGTGGAGGTAGC GCGTTTATTGAGGCTCACGCCCACTTCGGTGGAGCCAGGTGAGACTTGCG AAGCGTTATTTTTTCACAGTACGTAGAGAAGTGTTGGACAATTCCCCCCC CTCTCTTGGGGGCACGAGTAAGCACTAGTGTAAGAACATCAGTGCCGTGG ATGGGTTGTCGTTAGCGTTTGCAAAAAAGCAGAAGGCAGAAAGTGCACAA TATAGGAACAGGACCCTGGTGGAGTTTGTTGTACTTGAAACTGAGATGAC ATCATTTCATCGGCAGCCCGAAATAAAAAATCCTTGGTAGAGCATAGGTC AGGCGACTCCCCAGATTTGGTCACCAGGACGTAACTCGGAGTTTGTCCTG ATTCGACCTTGTTTTCCAGGTTATATCTGGGGTCCTATTTCTTCTTTCTT GTACCATAGTAAGTACCAGGGACGGTACGGTATAGAGTAGAAGTATAATG ATGATTAGTTATTTTCTCCTTGACTCTTTGCGTATCTGACCACAAGTCGG TTAGGTCGGATTAAGCCGATCGGCTATACGTGTGCAAATCAATCAATCAA ATCAAATCAAACCTGTCGCAAAGCATGGCAGCGTTTGTCGAGCTCCTCGC AACACATGGATCATATGGTTGCGTTTCTTTGCCCTCCCGTTAAAATTGGC CTTTGTGGTGGCTTCTTCTATCGCGCTTTCCTCTACAACCGATATCGCAG TTTCGTTCATGCTTCCTCGATCCGGGGACCTGAAGGATTACTTCCAAGAC GATGTGTACCGGTGAGTAGCCAGGCATGTCTGCTGCTGGTAGTCTTTAAT CTTGGAATATCGAATGCCCCTTGCAGTTGTGTACCCCGACTGACCCATGC TTTACCTACGCCGCATGCGTGTAAGCCAAAGTGCGATACCCTGACGACGT TGCGTCAAGGTTGAGGCCTTTGAGGTCTTTCGCCGTTATGATACTGTAGT GTGCTCGACATGACTGCCATCTTTTGTTTTTGAATCATGTCCTATTATAC TATTGTATTAATATTGTAGTATGTCGCGTCGATCGTGCATGTCCGTGTCG CGGTGTGTGATCATATCTTGCATCATGTGCTTGCCCTACGTACGCTGCAG CCCGGTCCGCTCGTCGGAGCCGTGCCTGGGCTCGACGAAGTGGCTGCAGG GTGGTTCTCTGGACGATGCTGAATGCGAGAGTCGCCGGTCTTTGTGTCCA CCAGGTACTGTACTGTATTTGATTGATTGATTGATCGATTGATTGATTGA TTTGCACACGTATAGCTGATCGGCTTAATCCGACCCGGCTTGTGGTCAGA CACGCAAAGACTCAAGGAGAAAATCGTATTAATAACTCTACTTCTACGAT ACACTGTACCGTCCCTGGTACTTCCTATGGTACAAGAAATAATAAATAGT ACCCTATACTTCGAAGTATACAGAGAAAGCGCTACAAGAGGACTCGGAAT CGGAGAGTGCTCCCTGGCCTCTCCACAGATCCTTATTGTACTACAGCCAG CTCCAACGCGGCAGGGACATCAGTAGAAGAGTTAGAGCAGATGAAAAATA TAAATGGAGATAAGAAGGAAATGAGACAGAATTACATGCAAATGTGTATT GTACTTGCGCTGTGCACCGATGGGCGAGCTGTGAGAGTACAGTTAAAGCT GAAAAACCTGCTGCATTCGCGATAAAAAGGTAGGGCGTGTGCCGAGGAGA GAGGGAGGTGGGTGACTTAAGATCGATACACGCCTCGATACAGTACCACA GACGTGATTCAGACAAGGAAGGGCGAACCGCCACTGAAAATGTCACAAGG ATGCGTGAGATTTTCTTTTAGATAAAACAAAACATTTTTTTTTTAATATA TGTGCACTTTTACCCCCCAGATGTTGAGATTTACGCGCGAGTTTCGCGCG CGAATTGTATTCACGCGGCAAGTGCCACAAACGGGATTCGGGCAAGACGG ATCGGTGATATGTATGATAGGCGTAATGTACACACGTACACACACACGCC GGACATGTCGTGCGCTAGAAGAGAGCACTCTACCCGCGTGTACACGACAA TCTCCGCCGTCTCACTGAAGCGGTGGGCATCTCGGAACTGAACTGCACCC CCTGCCTCCGCGAATACAGTAGTACGGGCTTCTTTGATGGGTATCCTTGC TCGCTAACGTGCGCTGACTTCATCATGGCAGGCATGAAGCCGCTGTCTGA ACGGCCTGCTCCTGTGGAAGTGTCGGTGCCAAAGGCCGTGGTTTTCCGTC AGGAGATGGAGCAGCGACAGAAGGTGAGAGCTGAATCGTGAACGAAGTGC TGGAATGCCATTCCCTTGAACACCGATCAGCTAGTTCTTATAATCTGGGT AGTTGCTGCATACCGAGCCGTTTATTTGTTTGATTGATGGATTGATTGAT TATCACACTTACATCCGACCGGCCCGCTATGCATAACGGTTGCCGATCCC GCTCGTGGGTAGATGAGAAAATCGAAAATTCGAAAAACAAACTTAAGGAA TTACGTATATTTATACTTCGTAGTACACTATGATAGGGATGAAAGAATAC AAACAAACGATCGCAACCCTTGGATCGGCAAAAAAATAACGAAATACAAA GCTGTCTCCTTCAGTAAATGCAATAGCATACAATTAAGGTGGGGTGCTGG CGTCTTCTGTCTTATTTGTTGCCATGGTACCACATTCTATCCTTGGAAGG ATCTCCTTGAAAATCAGGCGGTGTAGGAGCGGGGTCCGTATTTATTTTTT CCATGTTCAGCTTAACTGGCCCACTAAGTTCCACTGTCGACCCTTGTGGT ATCACAGCTCGACGATTGCTGTTTCACTCGCTTGGACGGATCGGTGTACC TTTGACGCGATGTGAACGACGTGGACACCGTTGGCGCCCTTTCCCCACGC ATCTCTCCTCTCGCGTTTGCCACGCCTTTTTCATTAGGAGGAGAAAGACG CTGCGGACAAGATGGCCAAGATGACTCAGCTAGCCAATCAAAACGCAGAG TACAATCCGAACCGGAGCGTGGGAGTTGTGATGGGTGTCGACCAGCCGAC GATCGTAGATTCAGGATCCGAAGATGACTGGTCGGATTAATCCCTCCCAG CTACGATGTGCTAGTGCTGTGCTGGTGCTGTGCTGGTGCTGTGCTGGTAC TCCATGTACAAGCACTAACACCTTATCCATTGCAGTTTAACCTAATACTT GTACGTGTAGGTATCATAGCCACGGCTACGCCGGCGAGGTTTGCGTTGGT ACGAAGTGGTGACTACGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13071:331..4499+

>mRNA_S-dermatodea_contig13071.1850.1 ID=mRNA_S-dermatodea_contig13071.1850.1|Name=mRNA_S-dermatodea_contig13071.1850.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at S-dermatodea_contig13071:331..4499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGTAAAGTACTACGAGTTGAGTGAAGGCGATCAAAGCGACTCAGC
CCTGCCCGAGTTGCACTTCTGTCATGAACACAAGGCCGCGGGAGACCCTC
TGAGCGGTGTGGCGCTCCTTCCGCCCCAGTGCCTCAACATCGAGGGCGTG
GAGGTAGCGCGTTTATTGAGGCTCACGCCCACTTCGGTGGAGCCAGATGG
GGGTAAAGTACTACGAGTTGAGTGAAGGCGATCAAAGCGACTCAGCCCTG
CCCGAGTTGCACTTCTGTCATGAACACAAGGCCGCGGGAGACCCTCTGAG
CGGTGTGGCGCTCCTTCCGCCCCAGTGCCTCAACATCGAGGGCGTGGAGG
TAGCGCGTTTATTGAGGCTCACGCCCACTTCGGTGGAGCCAGTTTCGTTC
ATGCTTCCTCGATCCGGGGACCTGAAGGATTACTTCCAAGACGATGTGTA
CCGTTTCGTTCATGCTTCCTCGATCCGGGGACCTGAAGGATTACTTCCAA
GACGATGTGTACCGCCCGGTCCGCTCGTCGGAGCCGTGCCTGGGCTCGAC
GAAGTGGCTGCAGGGTGGTTCTCTGGACGATGCTGAATGCGAGAGTCGCC
GGTCTTTGTGTCCACCAGCCCGGTCCGCTCGTCGGAGCCGTGCCTGGGCT
CGACGAAGTGGCTGCAGGGTGGTTCTCTGGACGATGCTGAATGCGAGAGT
CGCCGGTCTTTGTGTCCACCAGGCATGAAGCCGCTGTCTGAACGGCCTGC
TCCTGTGGAAGTGTCGGTGCCAAAGGCCGTGGTTTTCCGTCAGGAGATGG
AGCAGCGACAGAAGGCATGAAGCCGCTGTCTGAACGGCCTGCTCCTGTGG
AAGTGTCGGTGCCAAAGGCCGTGGTTTTCCGTCAGGAGATGGAGCAGCGA
CAGAAGGAGGAGAAAGACGCTGCGGACAAGATGGCCAAGATGACTCAGCT
AGCCAATCAAAACGCAGAGTACAATCCGAACCGGAGCGTGGGAGTTGTGA
TGGGTGTCGACCAGCCGACGATCGTAGATTCAGGATCCGAAGATGACTGG
TCGGATTAAGAGGAGAAAGACGCTGCGGACAAGATGGCCAAGATGACTCA
GCTAGCCAATCAAAACGCAGAGTACAATCCGAACCGGAGCGTGGGAGTTG
TGATGGGTGTCGACCAGCCGACGATCGTAGATTCAGGATCCGAAGATGAC
TGGTCGGATTAA
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