mRNA_S-dermatodea_contig13070.1849.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.020e-22 Identity = 75/171 (43.86%), Postives = 94/171 (54.97%), Query Frame = 1
Query: 10 HGANVNAADTGGRTAMHLAVDRNDDRAIETLARFGADIEAMVDEATPLYVACEDLRHKAALALLRNGANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESGVTVHDAASCK------------RVKNLLLNARADKAWRRRGPLILCRNFVVGG 486
HG +VNA G TA+ +A + AI+ L GA+IEA + +TPL+VA ++ R A +ALLR+GA+ TPLH AA PGT EMVDL+LR GADE +V E+G T D K RV+ LL A AD+AWRRRG LIL R GG
Sbjct: 546 HGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIEAQANGSTPLHVASQEGRLAAGIALLRHGASVG----KKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGG 712
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 3.190e-18 Identity = 68/176 (38.64%), Postives = 94/176 (53.41%), Query Frame = 1
Query: 10 HGANVNAADTGGRTAMHLAVDRNDDRAIETLARFGADIEAMVDE-ATPLYVACEDLRHKAALALLRNGANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESGVTVHDA-------ASC-------KRVKNLLLNARADKAWRRRGPLILCRNFVVGGTR 492
HG +VN T G T++H+A N AI+ L GA +E D+ TP AC + H+AALAL ++GAN + + TPL AA G +VD++LR GADE ++ G T + A+C +RV++LL NA AD+AWRRRG L+LCR F + R
Sbjct: 178 HGVDVNRR-TDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRG----ETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAFWIKSRR 348
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 9.900e-17 Identity = 66/176 (37.50%), Postives = 93/176 (52.84%), Query Frame = 1
Query: 10 HGANVNAADTGGRTAMHLAVDRNDDRAIETLARFGADIEAMVDE-ATPLYVACEDLRHKAALALLRNGANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESGVTVHDA-------ASC-------KRVKNLLLNARADKAWRRRGPLILCRNFVVGGTR 492
HG +VN T G T++H+A N AI+ L GA +E D+ TP AC + H+AALAL ++G+N + + TPL AA G +VD++LR GADE ++ G T + A+C +RV++LL NA D+AWRRRG L+LCR F + R
Sbjct: 129 HGVDVNRR-TDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRG----ETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFWIKARR 299
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 2.760e-14 Identity = 66/168 (39.29%), Postives = 89/168 (52.98%), Query Frame = 1
Query: 16 ANVNAADTGGRTAMHLAVDRNDDRAIETLARFGAD--IEAMVDEA---TPLYVACEDLRHKAALALLRNGANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESGVTVHDA----------ASCKRVKNLLLNARA--DKAWRRRGPLILCR 468
A+ A G TA+H A N A+E L GAD +E++ TPL A E + ++A LLRNGA+P P DD PLH AA + PG E+VDL+LRWGA E +V + G T + A+ +R L+L ARA D+AWRRRG +++ R
Sbjct: 193 ASSQACPASGWTALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKP--DD--NGSMPLHLAA-HEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLR 355
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 3.860e-13 Identity = 62/169 (36.69%), Postives = 85/169 (50.30%), Query Frame = 1
Query: 10 HGANVNAADTGGRTAMHLAVDRNDDRAIETLARFGADIEAMVDEA-TPLYVAC--EDLRHKAALA-LLRNGANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESGVTVHDAASCK------------RVKNLLLNARADKAWRRRGPLILCR 468
HGA+V+A + GG A+H A N A++ L R GA+ +M + T L++A A LA LL++GA+ + L A + G E+VDL+LRWGADE V +G+ DA K V+ LL NA AD+AWRRR L+LCR
Sbjct: 182 HGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSV----LEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCR 346
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 4.000e-9 Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 1
Query: 112 GADIEAM-VDEATPLYVACEDLRHKAALALLRNGANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESGVTVHDAA------------SCKRVKNLLLNARADKAWRRRGPLILCR 468
GA+I+A ++ TP + A L +A LALL++GA+ W TPLH+A + + G E+VDL+LRW ADE G T + + +RV L A D+AWR RG L+LCR
Sbjct: 408 GANIQATRINGETPRHAAAGKLNFEATLALLKHGADMNALGQTRW----TPLHSAVHSAGDEGAVEVVDLLLRWNADEADDDTYGRTPRNLVVRMAPETDRMFVNVQRVWKPLQYAPQDRAWRHRGMLVLCR 535
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: A0A6H5JT17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT17_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.240e-8 Identity = 45/113 (39.82%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 145 TPLYVACEDLRHKAALALLRNGANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESGVTVHDAASCK-----RVKNLLLNARADKAWRRRGPLILCR 468
TPL+VA R + ALLR+GAN D+ L TPLH + PG+ + DL+L W ADE + G T S + RV+ L NA AD+ WR RG L++CR
Sbjct: 240 TPLHVAAYYHRSLSMAALLRSGANVDAE-ADNGL---TPLHMVCKTSLAPGSVKANDLLLSWDADETTTDHDGRTPKALVSGRSSLRWRVRQKLANAPADRLWRSRGMLVMCR 348
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 4.520e-8 Identity = 56/160 (35.00%), Postives = 72/160 (45.00%), Query Frame = 1
Query: 22 VNAADTGGRTAMHLAVDRNDDRAIETLARFGADIEAMVDEATPL--YVACEDLRHKAALALLRNGANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESG-----------VTVHDAASCKRVKNLLLNARADKAWRRRGPLIL 462
++A D T + +V N TL GA A T Y A AL LLR GA+ +LF + LH A N T +VDL+LRWGADE V SG T H A + +V+ LL+NA AD+ WRRRG L++
Sbjct: 263 IDAVDGNMMTPLICSVSENHLCVSATLLEAGAAASAEDQTGTSSLSYAAASSSSVDMALLLLRYGADVN---TRCYLFGSSVLHNACTNR--DNTEALVDLLLRWGADETVVDSSGRTPMNHLTEDRFTRHSAETKDKVRKLLVNAPADRTWRRRGWLVM 417
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 8.610e-8 Identity = 57/176 (32.39%), Postives = 76/176 (43.18%), Query Frame = 1
Query: 7 GHGANVNAADTGGRTAMHLAVDRNDDRAIETLARFGADIEAMVDEA--------------TPLYVACEDLRHKAALALLRNG---ANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESGVTVHDAASCKRVKN-----LLLNARADKAWRRRGPLILCR 468
G GA+V + D G +A+H AV ++ L GAD+EA TPL+ A + L LL+ G AN Q D+ +PLH N D++LR GADE + E T D + N LL NA AD+AWRRRG L++ R
Sbjct: 182 GMGADVTSVDNIGYSALHWAVRDGRSDVVDALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAYQGNYPGMLVLLQKGRANANAQ----DE--HGHSPLHILCMNPQVCSAAACSDILLRSGADETATDEDRHTPADIMASSEGHNGWLQQLLANAPADRAWRRRGTLVMLR 351
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 2.840e-7 Identity = 57/176 (32.39%), Postives = 81/176 (46.02%), Query Frame = 1
Query: 22 VNAADTGGRTAMHLAV-----DRNDDRAIETLARFGADIEAMVDE----ATPLYVA-CEDLRHKAAL-ALLRNGANPQPPPLDDWLFWPTPLHAAAANNAEPGTYEMVDLMLRWGADEKSVGESGVTVHDA---------------ASCKRVKNLLLNARADKAWRRRGPLILCRN 471
VNA D G TA+H A R+ A+ L GAD+ A + PL++A C + + ALL GA+ ++D TPLH A ++ V+L+LRWGADEK + VT D A +R+ +L A AD++WRRR L+L R+
Sbjct: 270 VNATDHYGYTALHHAALIEVHGRDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDR----TPLHEACTYSSVAA----VELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRS 437 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13070.1849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13070.1849.1 >prot_S-dermatodea_contig13070.1849.1 ID=prot_S-dermatodea_contig13070.1849.1|Name=mRNA_S-dermatodea_contig13070.1849.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=251bp MHLAVDRNDDRAIETLARFGADIEAMVDEATPLYVACEDLRHKAALALLRback to top mRNA from alignment at S-dermatodea_contig13070:4686..6720+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13070.1849.1 ID=mRNA_S-dermatodea_contig13070.1849.1|Name=mRNA_S-dermatodea_contig13070.1849.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2035bp|location=Sequence derived from alignment at S-dermatodea_contig13070:4686..6720+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13070:4686..6720+ >mRNA_S-dermatodea_contig13070.1849.1 ID=mRNA_S-dermatodea_contig13070.1849.1|Name=mRNA_S-dermatodea_contig13070.1849.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at S-dermatodea_contig13070:4686..6720+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |