mRNA_S-dermatodea_contig13056.1843.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13056.1843.1
Unique NamemRNA_S-dermatodea_contig13056.1843.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13056.1843.1 vs. uniprot
Match: A0A6H5K1A6_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1A6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 8.760e-15
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = -1 
Query:  271 EVRKQQRMLRNRESAALSRKRKSDRIGELEIQVESLEEENRRLRRRITQFGD 426
            EVRKQQRMLRNRESAALSRKRKSDRIGELEIQVE+L+EENRRLR+RI +  D
Sbjct:   62 EVRKQQRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRQRIDRQED 113
[Close]
BLAST of mRNA_S-dermatodea_contig13056.1843.1 vs. uniprot
Match: D8LF84_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF84_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.890e-15
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = -1 
Query:  271 EVRKQQRMLRNRESAALSRKRKSDRIGELEIQVESLEEENRRLRRRITQFGD 426
            EVRKQQRMLRNRESAALSRKRKSDRIGELEIQVE+L+EENRRLR+RI +  D
Sbjct:   62 EVRKQQRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRQRIDRKED 113
[Close]
BLAST of mRNA_S-dermatodea_contig13056.1843.1 vs. uniprot
Match: A0A7S2WMG5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMG5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.290e-6
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = -1 
Query:  286 GSADGGASGNCGNEVRKQQRMLRNRESAALSRKRKSDRIGELEIQVESLEEENRRLRRRI 465
            GSA+ GA+     E +KQ RM+RNR+SAALSRKRK+DRI  LE +V  LE EN +LRRR+
Sbjct:   57 GSANSGAT-----EQKKQMRMIRNRQSAALSRKRKADRISALEQRVIELETENMQLRRRL 111
[Close]
BLAST of mRNA_S-dermatodea_contig13056.1843.1 vs. uniprot
Match: A0A7S2ALG2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALG2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.040e-6
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = -1 
Query:  283 RKQQRMLRNRESAALSRKRKSDRIGELEIQVESLEEENRRLRRRIT 420
            +KQ+RM+RNR+SAALSRKRK+DRI  LE +V  LEEEN+ LR +IT
Sbjct:  137 KKQERMIRNRQSAALSRKRKADRISSLEKRVAFLEEENKSLRNQIT 182
[Close]
BLAST of mRNA_S-dermatodea_contig13056.1843.1 vs. uniprot
Match: A0A6H5JF82_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF82_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.640e-6
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = -1 
Query:  277 RKQQRMLRNRESAALSRKRKSDRIGELEIQVESLEEENRRLRRRITQF 420
            +KQQRM+RNRESAALSRKRK D+I  LE QV  L EENR LR R+ ++
Sbjct:  155 KKQQRMIRNRESAALSRKRKRDKIESLEDQVARLAEENRGLRHRLAKY 202
[Close]
BLAST of mRNA_S-dermatodea_contig13056.1843.1 vs. uniprot
Match: A0A7S2WN10_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WN10_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.450e-6
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = -1 
Query:  286 GSADGGASGNCGNEVRKQQRMLRNRESAALSRKRKSDRIGELEIQVESLEEENRRLRRRI 465
            GSA+ GA+     E +KQ RM+RNR+SAALSRKRK+DRI  LE +V  LE EN +LRRR+
Sbjct:  113 GSANSGAT-----EQKKQMRMIRNRQSAALSRKRKADRISALEQRVIELETENMQLRRRL 167
[Close]
BLAST of mRNA_S-dermatodea_contig13056.1843.1 vs. uniprot
Match: D7FYX6_ECTSI (Similar to activating transcription factor 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX6_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.510e-6
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = -1 
Query:  277 RKQQRMLRNRESAALSRKRKSDRIGELEIQVESLEEENRRLRRRITQF 420
            +KQQRM+RNRESAALSRKRK D+I  LE QV  L EENR LR R+ ++
Sbjct:  156 KKQQRMIRNRESAALSRKRKRDKIESLEEQVARLAEENRGLRHRLAKY 203
[Close]
BLAST of mRNA_S-dermatodea_contig13056.1843.1 vs. uniprot
Match: A0A4D9D9D1_9STRA (BZIP domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9D1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.560e-5
Identity = 27/49 (55.10%), Postives = 43/49 (87.76%), Query Frame = -1 
Query:  277 VRKQQRMLRNRESAALSRKRKSDRIGELEIQVESLEEENRRLRRRITQF 423
             +KQ RM+RNRESAALSRKRK D++  LE++VE+L+++NR+L++R+ ++
Sbjct:  250 TKKQLRMIRNRESAALSRKRKRDQVEALELEVEALKDKNRQLKQRLARY 298
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13056.1843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K1A6_9PHAE8.760e-1586.54BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LF84_ECTSI8.890e-1586.54BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2WMG5_9STRA2.290e-660.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2ALG2_9STRA4.040e-667.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5JF82_9PHAE4.640e-666.67BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2WN10_9STRA5.450e-660.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FYX6_ECTSI5.510e-666.67Similar to activating transcription factor 6 n=1 T... [more]
A0A4D9D9D1_9STRA1.560e-555.10BZIP domain-containing protein n=4 Tax=Monodopsida... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13056contigS-dermatodea_contig13056:2533..3020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.2823856-CDS-S-dermatodea_contig13056:2532..30181622924272.2823856-CDS-S-dermatodea_contig13056:2532..3018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13056 2533..3018 +
1694079141.1144302-CDS-S-dermatodea_contig13056:2532..30181694079141.1144302-CDS-S-dermatodea_contig13056:2532..3018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13056 2533..3018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13056.1843.1prot_S-dermatodea_contig13056.1843.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13056 2533..3018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13056.1843.1

>prot_S-dermatodea_contig13056.1843.1 ID=prot_S-dermatodea_contig13056.1843.1|Name=mRNA_S-dermatodea_contig13056.1843.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
KEGREGHGDFNRPDLKVLRKHCGSRDDVKACSSSRRSGRRGGGRDHGRQD
VGDEEGRRRCGGPGRNSSTCSAGAFCSSGRAAGGPGAAAPVSELGDAPTK
ATVLLFERFHLNLELADPVALALAGEGGGLAVPQHSLLLPDLIPAVARRA
AVGRARTASTGR
back to top

mRNA from alignment at S-dermatodea_contig13056:2533..3020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13056.1843.1 ID=mRNA_S-dermatodea_contig13056.1843.1|Name=mRNA_S-dermatodea_contig13056.1843.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=488bp|location=Sequence derived from alignment at S-dermatodea_contig13056:2533..3020+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGAAGGTCGAGAGGGCCATGGCGATTTTAATCGGCCCGACTTAAAGGT
GTTACGCAAACACTGCGGGTCGCGAGACGATGTTAAAGCTTGCAGCAGCA
GTAGAAGAAGTGGCAGAAGGGGTGGCGGGCGAGACCACGGTCGGCAGGAT
GTTGGGGATGAAGAAGGGCGTCGCCGTTGCGGCGGACCGGGGCGGAACAG
CAGTACTTGTAGTGCGGGGGCGTTTTGTAGCAGTGGGCGGGCAGCAGGCG
GCCCCGGCGCCGCCGCCCCCGTCTCCGAACTGGGTGATGCGCCGACGAAG
GCGACGGTTCTCCTCTTCGAGCGATTCCACCTGAATCTCGAGCTCGCCGA
TCCGGTCGCTCTTGCGCTTGCGGGAGAGGGCGGCGGACTCGCGGTTCCTC
AGCATTCGCTGCTGCTTCCGGACCTCATTCCCGCAGTTGCCAGACGCGCC
GCCGTCGGCCGAGCCCGGACTGCCTCCACCGGTAGACG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13056:2533..3020+

>mRNA_S-dermatodea_contig13056.1843.1 ID=mRNA_S-dermatodea_contig13056.1843.1|Name=mRNA_S-dermatodea_contig13056.1843.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig13056:2533..3020+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGAAGGTCGAGAGGGCCATGGCGATTTTAATCGGCCCGACTTAAAGGT
GTTACGCAAACACTGCGGGTCGCGAGACGATGTTAAAGCTTGCAGCAGCA
GTAGAAGAAGTGGCAGAAGGGGTGGCGGGCGAGACCACGGTCGGCAGGAT
GTTGGGGATGAAGAAGGGCGTCGCCGTTGCGGCGGACCGGGGCGGAACAG
CAGTACTTGTAGTGCGGGGGCGTTTTGTAGCAGTGGGCGGGCAGCAGGCG
GCCCCGGCGCCGCCGCCCCCGTCTCCGAACTGGGTGATGCGCCGACGAAG
GCGACGGTTCTCCTCTTCGAGCGATTCCACCTGAATCTCGAGCTCGCCGA
TCCGGTCGCTCTTGCGCTTGCGGGAGAGGGCGGCGGACTCGCGGTTCCTC
AGCATTCGCTGCTGCTTCCGGACCTCATTCCCGCAGTTGCCAGACGCGCC
GCCGTCGGCCGAGCCCGGACTGCCTCCACCGGTAGAAAGGAAGGTCGAGA
GGGCCATGGCGATTTTAATCGGCCCGACTTAAAGGTGTTACGCAAACACT
GCGGGTCGCGAGACGATGTTAAAGCTTGCAGCAGCAGTAGAAGAAGTGGC
AGAAGGGGTGGCGGGCGAGACCACGGTCGGCAGGATGTTGGGGATGAAGA
AGGGCGTCGCCGTTGCGGCGGACCGGGGCGGAACAGCAGTACTTGTAGTG
CGGGGGCGTTTTGTAGCAGTGGGCGGGCAGCAGGCGGCCCCGGCGCCGCC
GCCCCCGTCTCCGAACTGGGTGATGCGCCGACGAAGGCGACGGTTCTCCT
CTTCGAGCGATTCCACCTGAATCTCGAGCTCGCCGATCCGGTCGCTCTTG
CGCTTGCGGGAGAGGGCGGCGGACTCGCGGTTCCTCAGCATTCGCTGCTG
CTTCCGGACCTCATTCCCGCAGTTGCCAGACGCGCCGCCGTCGGCCGAGC
CCGGACTGCCTCCACCGGTAGA
back to top