mRNA_S-dermatodea_contig13052.1840.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13052.1840.1
Unique NamemRNA_S-dermatodea_contig13052.1840.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 1.340e-61
Identity = 228/318 (71.70%), Postives = 249/318 (78.30%), Query Frame = 1 
Query:    4 MPPSEDRAALNGMEKRLFKLVPKGAAPAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDKRMAALHWALAGGHTDVARVLMLAGADVGLLDTRDRSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGQSNKLSPLQLARSNLAMTKTLLNHGADVKSSDRLGYTALHWAADS--------------GEVCVVGSFVEAGADVENQSSKMF 915
            M   EDR ALNG+EK LFKLV + AA AQW+EWLRAPLEHAVA+GD  L LALLKAGADG AGWEGC  R LL  AAEGGNEEVV TLL+ GG+ ELD  SGD    ALH ALAGGHT+ ARVLMLAGADVGLLD + R   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYG+    SPL  A  N+AMT+TLL +GADV S + LG+TALH AA                    V+G+ +EAGAD+E +S ++F
Sbjct:    1 MAAEEDRTALNGLEKMLFKLVSEKAASAQWSEWLRAPLEHAVAEGDNDLALALLKAGADGSAGWEGCGDRTLLQAAAEGGNEEVVLTLLDNGGVEELDVVSGDNERTALHRALAGGHTEAARVLMLAGADVGLLDVKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGRLRDRSPLFFAHENVAMTRTLLEYGADVLSFNHLGFTALHTAATEVFWHFSPILVKYAWANAKVIGALLEAGADLEARSGEVF 318
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BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: D8LDP2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP2_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.780e-58
Identity = 202/304 (66.45%), Postives = 222/304 (73.03%), Query Frame = 1 
Query:    4 MPPSEDRAALNGMEKRLFKLVPKGAAPAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDKRMAALHWALAGGHTDVARVLMLAGADVGLLDTRDRSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGQSNKLSPLQLARS-NLAMTKTLLNHGADVKSSDRLGYTALHWAADSGEVCVVGSFVEAGADVENQSSKM 912
            M   EDR AL G+EKRLFKLV + A  AQW+EWLRAPLEHAVA+GDK L L LLKAGA+GG+GWEGC+ R LL  AAEGGNEEVVSTLL  GGL E+D ASGD+   ALH AL GGHT  AR LM+AG+D  LLDT      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    +G+S   SPL LA   +LA  + LL HGA+V S D LG+TALHWAAD      +   VEAGAD+E  SS +
Sbjct:    1 MAAKEDRTALKGLEKRLFKLVSEKATSAQWSEWLRAPLEHAVAEGDKDLALTLLKAGANGGSGWEGCNDRTLLQAAAEGGNEEVVSTLLGKGGLEEIDVASGDQDRTALHRALIGGHTGAARALMVAGSDTSLLDTEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDRLTVAEALLTAGADPNVRFGKSKIYSPLFLAVGRSLATMRVLLQHGANVNSPDDLGFTALHWAADFDASAEIDVLVEAGADLEASSSSV 304
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BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 7.280e-58
Identity = 214/302 (70.86%), Postives = 242/302 (80.13%), Query Frame = 1 
Query:   16 EDRAALNGMEKRLFKLVPKGAAPAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDKRMAALHWALAGGHTDVARVLMLAGADVGLLDTRDRSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGQSNKLSPLQLARSN--LAMTKTLLNHGADVKSSDRLGYTALHWAADSGEVCVVGSFVEAGADVENQSSKMF 915
            E  AAL G E++LFKLV + A PAQWAEWLRAPLEHAVA+G++ L   LL+AGADGGAGW+GCDGR LL+ A +GGN + VS LLEAG L +++  +G  R + LH A+AGGHT VARVLMLAGA V LLD       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     YG S K SPLQLA S+   AMT+ LL HGADVKS D  G+TALHWAA  G+ CV+ + V AGAD+E +SS+++
Sbjct:    6 ERTAALGGTEEQLFKLVSRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDVAVQGGNSKTVSALLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVW 307
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BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: A0A6H5JQI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI2_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.840e-41
Identity = 110/275 (40.00%), Postives = 124/275 (45.09%), Query Frame = 1 
Query:   82 PAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDK-RMAALHWALAGGHTDVARVLMLAGADVGLLDTRDRSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGQSNKLSPLQLARSNLAMTKTLLNHGADVKSSDRLGYTALHWAADSGEVCVVGSFVEAGADVENQS 903
            P QWAEWLR PLEHAVA+GDK L L LLKAGA GG+GW+GCD   LL  AAEGGNE VV TLL+  G  ELD  SGDK +  ALH A AGG+TD AR+L LAGA  G L       +                                                                                           YG     SPL LAR N AMT+TLL  GADVKS   LG+ +LHWAA  G + VV + VE  A VE +S
Sbjct:   40 PVQWAEWLRIPLEHAVAEGDKDLALTLLKAGASGGSGWKGCDDPTLLQVAAEGGNEVVVRTLLDIAGTEELDAVSGDKDKRTALHSAAAGGYTDAARMLELAGAKGGHLQLAGDFVIAGADLEAKDGDGNTPLHFAAAHDSDTFIGTLRRGVCVLVVSNKGEHPLHIAVDHDDMTVRKALLKAGTDPNVR------------------YGSDKIFSPLNLARGNAAMTRTLLGSGADVKSVCELGHASLHWAAGHGVLEVVDALVEGRAKVEARS 296
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BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: D7FYG4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 9.470e-38
Identity = 200/302 (66.23%), Postives = 218/302 (72.19%), Query Frame = 1 
Query:    1 SMPPSEDRAALNGMEKRLFKLVPKG----AAPAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDKRMAALHWALAGGHTDVARVLMLAGADVGLLDTRDRSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGQSNKLSPLQLARSNLAMTKTLLNHGADVKSSDRLGYTALHWAADSGEVCVVGSFVEAGADVE 894
            +M   EDR AL  +E  L  +           AQWAEWLRAPLEHAVA+GDK L L LL AGA+GG+GW+GC+ R LL  AAEGGNEEVV TLL+  G+ E+D  S D+    LH A AGGHT+ ARVLMLAGA VGL+D++     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          GADVKS DRLG+TALHWAA  G   VV + VE GADVE
Sbjct:    8 TMATEEDRTALGRLETILLSINCSNWCGRTTSAQWAEWLRAPLEHAVAEGDKDLALTLLNAGANGGSGWKGCNDRTLLQAAAEGGNEEVVRTLLDIEGMEEVDAVSSDEGGTELHRAAAGGHTNAARVLMLAGASVGLVDSKGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGADVKSVDRLGHTALHWAAFDGIQEVVHALVEVGADVE 309
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BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 6.280e-31
Identity = 70/129 (54.26%), Postives = 85/129 (65.89%), Query Frame = 1 
Query:   22 RAALNGMEKRLFKLVPKGAAPAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDKRMAALHWALAGGHTDVARVLMLAGADVGLLD 408
            R  L G E  +F L+  GA P QW EWLRAPLEHA A+G+ +L   LL AGADGGAGW GC GR LL+ AA GGN +VV+TLL AG L +++  S   R +ALH +   GH   AR L+LAGAD   +D
Sbjct:    5 RPVLEGAEVGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVLVEKLLNAGADGGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVSSRRSALHLSAVCGHEAAARKLILAGADANRVD 133
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BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.140e-30
Identity = 70/132 (53.03%), Postives = 89/132 (67.42%), Query Frame = 1 
Query:   22 RAALNGMEKRLFKLVPKGAAPAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDKRMAALHWALAGGHTDVARVLMLAGADVGLLDTRD 417
            RA L G E  +FKL+  GA P QWAEWLRAPLEHA A+G+  L   LL AGA+GGAGW GC GR +L+ AA GGN +VV+TLL +G  ++++  S   R +ALH A   GH   A+ L++AGADV  +D  D
Sbjct:    7 RALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGD 138
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BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 6.520e-29
Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = 1 
Query:   19 DRAALNGMEKRLFKLVPKGAAPAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDKRMAALHWALAGGHTDVARVLMLAGADVGLLD 408
            +R  L GME  ++KLV   A P QW EWLR PLEHA A+G+  L  +LL AGADG AGW GC GR L++ AA GG+E VVSTLL AG   +++  S   + +AL+ A   GH D AR L+ AGADV   D
Sbjct:    6 ERRLLQGMESEIWKLVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADGSAGWRGCRGRTLIDAAALGGSEPVVSTLLRAGAQWDVNVVSVSSKRSALYTATMCGHEDAARRLVAAGADVDFED 135
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BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.560e-27
Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 1 
Query:   19 DRAALNGMEKRLFKLVPKGAAPAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDKRMAALHWALAGGHTDVARVLMLAGADVGLLD 408
            +R    GM   ++KLV   A P QW EWLR PLEHA A+G+  L  +LL+AGADG AGW+GC GR L++ AA GG+E VVS LL AG   +++  S   + ++L+ A   GH D AR L+ AGADV   D
Sbjct:    6 ERRLFQGMGSEIWKLVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWKGCRGRTLIDAAALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGADVNFED 135
[Close]
BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.550e-27
Identity = 67/140 (47.86%), Postives = 85/140 (60.71%), Query Frame = 1 
Query:    4 MPPSEDRAALNGMEKRLFKLVPKGAAPAQWAEWLRAPLEHAVAKGDKILTLALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDASGDKRMAALHWALAGGHTDVARVLMLAGADVGLLDTRDRS 423
            MP    R+ L G E  +FKLV KGA P QWAEWLR PLEHA A G+  L   LLKAGADG AGW GC  R LL+ A  GGN  V+S LL+AG   + +  +     + L+ ++      VAR L+LAGADV + D  +++
Sbjct:    1 MPVRRTRSLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADGEAGWRGCGDRTLLDAALSGGNAGVMSALLQAGCGPDANVLAPSTGRSVLYQSILSNQKAVARELILAGADVNIKDRAEKA 140
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13052.1840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW6_ECTSI1.340e-6171.70Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LDP2_ECTSI1.780e-5866.45Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LH19_ECTSI7.280e-5870.86Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5JQI2_9PHAE3.840e-4140.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYG4_ECTSI9.470e-3866.23Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LBP9_ECTSI6.280e-3154.26Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5K1F4_9PHAE4.140e-3053.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS36_ECTSI6.520e-2952.31Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRZ8_ECTSI1.560e-2749.23Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K513_9PHAE2.550e-2747.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13052contigS-dermatodea_contig13052:5493..6784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue4.8e-54
Seed eggNOG ortholog2880.D8LKW6
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size1292
Cds size945
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13052.1840.1prot_S-dermatodea_contig13052.1840.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13052 5496..6440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.112185-UTR-S-dermatodea_contig13052:5492..54951622924272.112185-UTR-S-dermatodea_contig13052:5492..5495Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13052 5493..5495 +
1694079140.9929836-UTR-S-dermatodea_contig13052:5492..54951694079140.9929836-UTR-S-dermatodea_contig13052:5492..5495Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13052 5493..5495 +
1622924272.1332643-UTR-S-dermatodea_contig13052:6440..67841622924272.1332643-UTR-S-dermatodea_contig13052:6440..6784Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13052 6441..6784 +
1694079141.0245762-UTR-S-dermatodea_contig13052:6440..67841694079141.0245762-UTR-S-dermatodea_contig13052:6440..6784Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13052 6441..6784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.122763-CDS-S-dermatodea_contig13052:5495..64401622924272.122763-CDS-S-dermatodea_contig13052:5495..6440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13052 5496..6440 +
1694079141.0128367-CDS-S-dermatodea_contig13052:5495..64401694079141.0128367-CDS-S-dermatodea_contig13052:5495..6440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13052 5496..6440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13052.1840.1

>prot_S-dermatodea_contig13052.1840.1 ID=prot_S-dermatodea_contig13052.1840.1|Name=mRNA_S-dermatodea_contig13052.1840.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=315bp
MPPSEDRAALNGMEKRLFKLVPKGAAPAQWAEWLRAPLEHAVAKGDKILT
LALLKAGADGGAGWEGCDGRILLNGAAEGGNEEVVSTLLEAGGLTELDDA
SGDKRMAALHWALAGGHTDVARVLMLAGADVGLLDTRDRSTLYYPVEGGH
LQLADMVIIGGADLHAKDTDGCSHLHLGAAHDDDNFVCTLLHRGASVNVA
NSKGQCPLHVAVEHRRITVAVALLKAGADPNVRYGQSNKLSPLQLARSNL
AMTKTLLNHGADVKSSDRLGYTALHWAADSGEVCVVGSFVEAGADVENQS
SKMFYCSTDIHSMG*
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mRNA from alignment at S-dermatodea_contig13052:5493..6784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13052.1840.1 ID=mRNA_S-dermatodea_contig13052.1840.1|Name=mRNA_S-dermatodea_contig13052.1840.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1292bp|location=Sequence derived from alignment at S-dermatodea_contig13052:5493..6784+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCATGCCACCCAGCGAGGACCGCGCAGCCCTGAACGGGATGGAGAAGAG
ACTGTTCAAACTGGTGCCGAAAGGGGCAGCACCAGCACAATGGGCGGAAT
GGCTCCGAGCGCCCCTGGAACACGCAGTGGCGAAGGGTGACAAGATCCTC
ACCTTGGCGCTCCTAAAAGCAGGGGCCGACGGGGGTGCAGGCTGGGAGGG
GTGCGACGGTCGCATCCTGCTGAATGGCGCGGCCGAGGGAGGAAACGAGG
AAGTGGTGTCCACTCTGCTCGAGGCAGGAGGCTTGACGGAGTTGGACGAT
GCATCCGGCGACAAGAGGATGGCAGCCCTCCATTGGGCGCTTGCTGGTGG
TCATACTGATGTGGCGCGGGTGTTGATGCTCGCAGGCGCGGACGTGGGTC
TGCTCGACACTCGTGACCGTAGCACCCTGTACTACCCAGTCGAGGGTGGT
CACCTCCAGCTCGCCGACATGGTGATAATTGGTGGAGCCGACCTGCATGC
CAAGGATACCGATGGCTGTAGCCACCTTCACCTTGGAGCCGCTCATGATG
ACGACAACTTCGTCTGTACCCTCTTGCACAGGGGGGCTAGTGTAAACGTG
GCAAACAGCAAGGGGCAGTGCCCGCTTCACGTGGCAGTCGAACACCGCCG
TATCACGGTGGCGGTGGCTCTTTTGAAGGCGGGTGCTGACCCCAATGTTC
GCTACGGCCAAAGCAACAAATTATCGCCTCTTCAACTCGCACGTTCAAAT
TTGGCGATGACCAAGACTCTACTAAACCATGGCGCCGACGTGAAATCATC
CGATCGTCTCGGCTATACCGCACTGCACTGGGCCGCGGACAGTGGCGAAG
TTTGCGTGGTGGGTTCGTTTGTCGAGGCCGGCGCAGATGTCGAAAATCAG
AGTTCCAAGATGTTTTACTGCTCGACAGACATTCATTCGATGGGCTGACA
TTTCTTTACCTCGCCGCCTACAGGATCGACGTCCCAGGCATGACCACAGC
AGTGCTACAAAAGGAAGCCAACATCAACGCGAAATCTGACAACGGTCTCA
CTCCCCTCCACGTGTTGTGCAAGACTTACACCAGCATCTTTGGGTTCTGG
GCCCCGGGAGCCGCCGACCTTCTACTGCGGTGGGGTGCGGACGAGACCGT
CAGCGACAACGATGGCCATAACCCCAATGCCCTGAGTGAGGGCCTTACGG
TAAAAAACCAGAGGTTGCGACGGGTGCTGGCCAACGCTCCAGCGGACAGG
ATGGGGCGTCGCCAGGGTATGCTGGTTATGTGCCGTGATCGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13052:5493..6784+

>mRNA_S-dermatodea_contig13052.1840.1 ID=mRNA_S-dermatodea_contig13052.1840.1|Name=mRNA_S-dermatodea_contig13052.1840.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1890bp|location=Sequence derived from alignment at S-dermatodea_contig13052:5493..6784+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCACCCAGCGAGGACCGCGCAGCCCTGAACGGGATGGAGAAGAGACT
GTTCAAACTGGTGCCGAAAGGGGCAGCACCAGCACAATGGGCGGAATGGC
TCCGAGCGCCCCTGGAACACGCAGTGGCGAAGGGTGACAAGATCCTCACC
TTGGCGCTCCTAAAAGCAGGGGCCGACGGGGGTGCAGGCTGGGAGGGGTG
CGACGGTCGCATCCTGCTGAATGGCGCGGCCGAGGGAGGAAACGAGGAAG
TGGTGTCCACTCTGCTCGAGGCAGGAGGCTTGACGGAGTTGGACGATGCA
TCCGGCGACAAGAGGATGGCAGCCCTCCATTGGGCGCTTGCTGGTGGTCA
TACTGATGTGGCGCGGGTGTTGATGCTCGCAGGCGCGGACGTGGGTCTGC
TCGACACTCGTGACCGTAGCACCCTGTACTACCCAGTCGAGGGTGGTCAC
CTCCAGCTCGCCGACATGGTGATAATTGGTGGAGCCGACCTGCATGCCAA
GGATACCGATGGCTGTAGCCACCTTCACCTTGGAGCCGCTCATGATGACG
ACAACTTCGTCTGTACCCTCTTGCACAGGGGGGCTAGTGTAAACGTGGCA
AACAGCAAGGGGCAGTGCCCGCTTCACGTGGCAGTCGAACACCGCCGTAT
CACGGTGGCGGTGGCTCTTTTGAAGGCGGGTGCTGACCCCAATGTTCGCT
ACGGCCAAAGCAACAAATTATCGCCTCTTCAACTCGCACGTTCAAATTTG
GCGATGACCAAGACTCTACTAAACCATGGCGCCGACGTGAAATCATCCGA
TCGTCTCGGCTATACCGCACTGCACTGGGCCGCGGACAGTGGCGAAGTTT
GCGTGGTGGGTTCGTTTGTCGAGGCCGGCGCAGATGTCGAAAATCAGAGT
TCCAAGATGTTTTACTGCTCGACAGACATTCATTCGATGGGCTGAATGCC
ACCCAGCGAGGACCGCGCAGCCCTGAACGGGATGGAGAAGAGACTGTTCA
AACTGGTGCCGAAAGGGGCAGCACCAGCACAATGGGCGGAATGGCTCCGA
GCGCCCCTGGAACACGCAGTGGCGAAGGGTGACAAGATCCTCACCTTGGC
GCTCCTAAAAGCAGGGGCCGACGGGGGTGCAGGCTGGGAGGGGTGCGACG
GTCGCATCCTGCTGAATGGCGCGGCCGAGGGAGGAAACGAGGAAGTGGTG
TCCACTCTGCTCGAGGCAGGAGGCTTGACGGAGTTGGACGATGCATCCGG
CGACAAGAGGATGGCAGCCCTCCATTGGGCGCTTGCTGGTGGTCATACTG
ATGTGGCGCGGGTGTTGATGCTCGCAGGCGCGGACGTGGGTCTGCTCGAC
ACTCGTGACCGTAGCACCCTGTACTACCCAGTCGAGGGTGGTCACCTCCA
GCTCGCCGACATGGTGATAATTGGTGGAGCCGACCTGCATGCCAAGGATA
CCGATGGCTGTAGCCACCTTCACCTTGGAGCCGCTCATGATGACGACAAC
TTCGTCTGTACCCTCTTGCACAGGGGGGCTAGTGTAAACGTGGCAAACAG
CAAGGGGCAGTGCCCGCTTCACGTGGCAGTCGAACACCGCCGTATCACGG
TGGCGGTGGCTCTTTTGAAGGCGGGTGCTGACCCCAATGTTCGCTACGGC
CAAAGCAACAAATTATCGCCTCTTCAACTCGCACGTTCAAATTTGGCGAT
GACCAAGACTCTACTAAACCATGGCGCCGACGTGAAATCATCCGATCGTC
TCGGCTATACCGCACTGCACTGGGCCGCGGACAGTGGCGAAGTTTGCGTG
GTGGGTTCGTTTGTCGAGGCCGGCGCAGATGTCGAAAATCAGAGTTCCAA
GATGTTTTACTGCTCGACAGACATTCATTCGATGGGCTGA
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