mRNA_S-dermatodea_contig13052.1839.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13052.1839.1
Unique NamemRNA_S-dermatodea_contig13052.1839.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: D8LDP2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP2_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.180e-44
Identity = 88/131 (67.18%), Postives = 105/131 (80.15%), Query Frame = 1 
Query:    1 DRTALSGMGKRLFKLVSKGATPSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGAGWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGKKMTALYRASKGGHTAEARVLVLAGADGSLLDS 393
            DRTAL G+ KRLFKLVS+ AT +QW+ W RAPLEHAVAEGD DL LTLLKAGA+ G+GW+GC+ RTLL AA EGG+EEVVSTLL  GGL E++  SG +  TAL+RA  GGHT  AR L++AG+D SLLD+
Sbjct:    6 DRTALKGLEKRLFKLVSEKATSAQWSEWLRAPLEHAVAEGDKDLALTLLKAGANGGSGWEGCNDRTLLQAAAEGGNEEVVSTLLGKGGLEEIDVASGDQDRTALHRALIGGHTGAARALMVAGSDTSLLDT 136
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 6.600e-44
Identity = 88/130 (67.69%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:    1 DRTALSGMGKRLFKLVSKGATPSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGAGWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGKKMTALYRASKGGHTAEARVLVLAGADGSLLD 390
            DRTAL+G+ K LFKLVS+ A  +QW+ W RAPLEHAVAEGD DL L LLKAGAD  AGW+GC  RTLL AA EGG+EEVV TLLD GG+ EL+ +SG  + TAL+RA  GGHT  ARVL+LAGAD  LLD
Sbjct:    6 DRTALNGLEKMLFKLVSEKAASAQWSEWLRAPLEHAVAEGDNDLALALLKAGADGSAGWEGCGDRTLLQAAAEGGNEEVVLTLLDNGGVEELDVVSGDNERTALHRALAGGHTEAARVLMLAGADVGLLD 135
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 5.220e-39
Identity = 81/131 (61.83%), Postives = 101/131 (77.10%), Query Frame = 1 
Query:    1 DRTA-LSGMGKRLFKLVSKGATPSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGAGWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGKKMTALYRASKGGHTAEARVLVLAGADGSLLD 390
            +RTA L G  ++LFKLVS+ ATP+QWA W RAPLEHAVAEG+  L  TLL+AGAD GAGW GCDGR+LLD A +GG+ + VS LL+ G L ++NA++G  + + L+RA  GGHTA ARVL+LAGA  SLLD
Sbjct:    6 ERTAALGGTEEQLFKLVSRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDVAVQGGNSKTVSALLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLD 136
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 9.800e-34
Identity = 81/180 (45.00%), Postives = 110/180 (61.11%), Query Frame = 2 
Query:  848 ALVEAGADLETKQSSYVRTGVNDKYTLKGLTPLHAAAVCHNFGSMVALLRKG-ADINAKYLRGRTPLHVVCMTYVKADSAEVANLLLRWGADETATDNDGKTSGQVIERDADLTGCLGRLLTNAPADRVWRRRGMLVVCRAQSSNILGGAGLSKATPDRVISRLVELEANVLFRTIVGFL 1384
            AL+E GAD+E + S  +    +  + +KG+TPLH AA   N+  M+ LL+KG A+ NA+   G +PLH++CM      +A  +++LLR GADETATD D  T   ++       G L +LL NAPADR WRRRG LV+ RAQ     G    ++AT D V+ RLV+L+   LFR IV FL
Sbjct:  212 ALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAYQGNYPGMLVLLQKGRANANAQDEHGHSPLHILCMNPQVCSAAACSDILLRSGADETATDEDRHTPADIMASSEGHNGWLQQLLANAPADRAWRRRGTLVMLRAQ-----GVQAENEATTDAVLPRLVDLQNEALFRHIVRFL 386
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: D7FYG4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 6.520e-33
Identity = 77/136 (56.62%), Postives = 94/136 (69.12%), Query Frame = 1 
Query:    1 DRTALSGMGKRLFKLVSKG----ATPSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGAGWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGKKMTALYRASKGGHTAEARVLVLAGADGSLLDSR 396
            DRTAL  +   L  +         T +QWA W RAPLEHAVAEGD DL LTLL AGA+ G+GW GC+ RTLL AA EGG+EEVV TLLD  G+ E++A+S  +  T L+RA+ GGHT  ARVL+LAGA   L+DS+
Sbjct:   14 DRTALGRLETILLSINCSNWCGRTTSAQWAEWLRAPLEHAVAEGDKDLALTLLNAGANGGSGWKGCNDRTLLQAAAEGGNEEVVRTLLDIEGMEEVDAVSSDEGGTELHRAAAGGHTNAARVLMLAGASVGLVDSK 149
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: A0A6H5JQI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.760e-32
Identity = 81/156 (51.92%), Postives = 92/156 (58.97%), Query Frame = 1 
Query:   64 PSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGAGWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGK-KMTALYRASKGGHTAEARVLVLAGADGSLLDSRTLXXXXXXXXXXXXXXXXXXXXXXXXHDAKCTNGNTPIHLAAAH 528
            P QWA W R PLEHAVAEGD DL LTLLKAGA  G+GW GCD  TLL  A EGG+E VV TLLD  G  EL+A+SG K K TAL+ A+ GG+T  AR+L LAGA G  L                              +AK  +GNTP+H AAAH
Sbjct:   40 PVQWAEWLRIPLEHAVAEGDKDLALTLLKAGASGGSGWKGCDDPTLLQVAAEGGNEVVVRTLLDIAGTEELDAVSGDKDKRTALHSAAAGGYTDAARMLELAGAKGGHLQ-----------------LAGDFVIAGADLEAKDGDGNTPLHFAAAH 178
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.350e-29
Identity = 66/130 (50.77%), Postives = 89/130 (68.46%), Query Frame = 1 
Query:    1 DRTALSGMGKRLFKLVSKGATPSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGAGWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGKKMTALYRASKGGHTAEARVLVLAGADGSLLD 390
            +RT+L G+G  +FKLVS GA+  QWA W R PLEHA + G+ +L   LL+AGAD GAGW GC GRTLLDAA  GG+ +V+S L+  G  A++N ++   + +AL+ A+  GH A A+ LVL GAD +  D
Sbjct:    6 ERTSLDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVERLLQAGADAGAGWRGCRGRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRD 135
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.080e-28
Identity = 66/125 (52.80%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:    1 DRTALSGMGKRLFKLVSKGATPSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGAGWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGKKMTALYRASKGGHTAEARVLVLAGAD 375
            +R    GMG  ++KLVS  ATP QW  W R PLEHA A G+ +L  +LL+AGAD  AGW GC GRTL+DAA  GGSE VVS LL  G   ++N +S   K ++LY A+  GH   AR L+ AGAD
Sbjct:    6 ERRLFQGMGSEIWKLVSHSATPQQWKEWLRVPLEHAAARGNLNLVNSLLEAGADGSAGWKGCRGRTLIDAAALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGAD 130
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.980e-28
Identity = 69/125 (55.20%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:    1 DRTALSGMGKRLFKLVSKGATPSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGAGWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGKKMTALYRASKGGHTAEARVLVLAGAD 375
            +R  L GM   ++KLVS  ATP QW  W R PLEHA A G+ +L  +LL AGAD  AGW GC GRTL+DAA  GGSE VVSTLL  G   ++N +S   K +ALY A+  GH   AR LV AGAD
Sbjct:    6 ERRLLQGMESEIWKLVSYSATPQQWKEWLRMPLEHAAARGNLNLVSSLLGAGADGSAGWRGCRGRTLIDAAALGGSEPVVSTLLRAGAQWDVNVVSVSSKRSALYTATMCGHEDAARRLVAAGAD 130
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BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.820e-28
Identity = 74/175 (42.29%), Postives = 100/175 (57.14%), Query Frame = 1 
Query:    4 RTALSGMGKRLFKLVSKGATPSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGAGWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGKKMTALYRASKGGHTAEARVLVLAGADGSLLD-SRTLXXXXXXXXXXXXXXXXXXXXXXXXHDAKCTNGNTPIHLAAA 525
            R  L G    +FKL+  GATP QWA W RAPLEHA A G+  L   LL AGA+ GAGW GC GRT+LDAA  GG+ +VV+TLL +G  +++N +S   + +AL+ AS  GH A A+ L++AGAD + +D                              +++  +G TP+HLAAA
Sbjct:    7 RALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAA 181
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13052.1839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDP2_ECTSI1.180e-4467.18Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LKW6_ECTSI6.600e-4467.69Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LH19_ECTSI5.220e-3961.83Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D8LCR2_ECTSI9.800e-3445.00Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FYG4_ECTSI6.520e-3356.62Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JQI2_9PHAE4.760e-3251.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNQ1_9PHAE1.350e-2950.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ8_ECTSI1.080e-2852.80Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LS36_ECTSI1.980e-2855.20Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K1F4_9PHAE3.820e-2842.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13052contigS-dermatodea_contig13052:2906..4289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue1.6e-36
Seed eggNOG ortholog2880.D8LDP2
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-19_001180.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size1384
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13052.1839.1prot_S-dermatodea_contig13052.1839.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13052 3711..4268 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.0579937-UTR-S-dermatodea_contig13052:2905..37101622924272.0579937-UTR-S-dermatodea_contig13052:2905..3710Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13052 2906..3710 -
1694079140.9626577-UTR-S-dermatodea_contig13052:2905..37101694079140.9626577-UTR-S-dermatodea_contig13052:2905..3710Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13052 2906..3710 -
1622924272.082099-UTR-S-dermatodea_contig13052:4268..42891622924272.082099-UTR-S-dermatodea_contig13052:4268..4289Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13052 4269..4289 -
1694079140.982983-UTR-S-dermatodea_contig13052:4268..42891694079140.982983-UTR-S-dermatodea_contig13052:4268..4289Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13052 4269..4289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.0708103-CDS-S-dermatodea_contig13052:3710..42681622924272.0708103-CDS-S-dermatodea_contig13052:3710..4268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13052 3711..4268 -
1694079140.973977-CDS-S-dermatodea_contig13052:3710..42681694079140.973977-CDS-S-dermatodea_contig13052:3710..4268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13052 3711..4268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13052.1839.1

>prot_S-dermatodea_contig13052.1839.1 ID=prot_S-dermatodea_contig13052.1839.1|Name=mRNA_S-dermatodea_contig13052.1839.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=186bp
MGKRLFKLVSKGATPSQWAAWPRAPLEHAVAEGDTDLTLTLLKAGADRGA
GWDGCDGRTLLDAATEGGSEEVVSTLLDTGGLAELNAISGGKKMTALYRA
SKGGHTAEARVLVLAGADGSLLDSRTLSALHHAVKGGHLQLAGDVVVAGT
DHDAKCTNGNTPIHLAAAHTTTKKSSVRSCERELT*
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mRNA from alignment at S-dermatodea_contig13052:2906..4289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13052.1839.1 ID=mRNA_S-dermatodea_contig13052.1839.1|Name=mRNA_S-dermatodea_contig13052.1839.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1384bp|location=Sequence derived from alignment at S-dermatodea_contig13052:2906..4289- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCGCACAGCCCTGAGCGGAATGGGGAAGAGACTGTTTAAACTGGTATC
GAAGGGAGCGACACCATCACAATGGGCGGCATGGCCCAGAGCGCCCCTGG
AGCACGCAGTGGCGGAGGGTGATACGGACCTGACCTTGACGCTCCTAAAA
GCAGGGGCCGACAGAGGTGCGGGCTGGGATGGATGCGATGGCCGCACGTT
GCTGGATGCGGCGACCGAGGGAGGGAGCGAGGAGGTGGTGTCCACTTTGC
TCGACACAGGAGGGTTGGCGGAGTTGAACGCCATATCTGGTGGCAAGAAG
ATGACTGCCCTCTATCGGGCCAGCAAGGGCGGCCACACAGCTGAGGCGCG
TGTGTTGGTGCTTGCAGGCGCGGACGGGAGCCTGCTCGACTCTCGTACTC
TCAGCGCGTTGCACCACGCCGTCAAAGGTGGTCACCTCCAGCTCGCCGGA
GATGTTGTGGTAGCTGGCACTGACCACGACGCAAAGTGTACCAATGGCAA
CACCCCCATTCACCTCGCCGCCGCTCACACGACGACGAAAAAATCGTCTG
TCCGCTCTTGCGAACGGGAGCTGACGTGAAGGTACCCAATAACAAAGGAC
AGCACCCGCTCCATACGGCAGTCGAACACGGCCATGTCACGGCGGCGGAG
GCTCTTTTGAAGGTCGGCGCTGACTCCAACGTTCGCTACGGCAGAAGCAA
CAGATTCTCGCCTCTTCAGCTAGCACGTTCAAATTGGGCGATAACGCAGA
CTCTACTCAACCATGGCGCCGACGTGGAATCATCGGACAATCTCGGGTAG
ACCGCGCTGCACTGGGCCTGGGAAAGTGGTAAACCAAGTGCGGTTGTGCG
CTTGTCGAGGCCGGGGCCGATCTCGAAACAAAGCAGAGTTCCTATGTCCG
TACTGGTGTCAATGACAAGTATACATTAAAGGGGCTGACACCTCTTCACG
CCGCCGCGGTTTGCCACAACTTTGGGAGTATGGTGGCGTTGTTGCGCAAG
GGTGCCGATATCAACGCAAAATATCTCAGGGGGCGGACGCCATTGCATGT
CGTGTGTATGACTTATGTCAAAGCCGACTCGGCCGAGGTAGCCAACCTTC
TACTGAGGTGGGGCGCGGACGAGACGGCTACCGACAACGACGGCAAAACC
TCGGGACAGGTGATCGAAAGAGATGCCGATCTGACCGGATGCTTGGGGAG
GCTGCTGACCAATGCTCCTGCGGACAGAGTGTGGCGACGCCGGGGTATGC
TGGTCGTGTGCCGTGCTCAATCAAGCAACATTCTGGGCGGAGCAGGATTG
AGCAAGGCCACTCCTGATCGTGTAATATCACGTCTGGTCGAGCTGGAGGC
CAACGTACTTTTCCGGACGATAGTGGGGTTCCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13052:2906..4289-

>mRNA_S-dermatodea_contig13052.1839.1 ID=mRNA_S-dermatodea_contig13052.1839.1|Name=mRNA_S-dermatodea_contig13052.1839.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at S-dermatodea_contig13052:2906..4289- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGAAGAGACTGTTTAAACTGGTATCGAAGGGAGCGACACCATCACA
ATGGGCGGCATGGCCCAGAGCGCCCCTGGAGCACGCAGTGGCGGAGGGTG
ATACGGACCTGACCTTGACGCTCCTAAAAGCAGGGGCCGACAGAGGTGCG
GGCTGGGATGGATGCGATGGCCGCACGTTGCTGGATGCGGCGACCGAGGG
AGGGAGCGAGGAGGTGGTGTCCACTTTGCTCGACACAGGAGGGTTGGCGG
AGTTGAACGCCATATCTGGTGGCAAGAAGATGACTGCCCTCTATCGGGCC
AGCAAGGGCGGCCACACAGCTGAGGCGCGTGTGTTGGTGCTTGCAGGCGC
GGACGGGAGCCTGCTCGACTCTCGTACTCTCAGCGCGTTGCACCACGCCG
TCAAAGGTGGTCACCTCCAGCTCGCCGGAGATGTTGTGGTAGCTGGCACT
GACCACGACGCAAAGTGTACCAATGGCAACACCCCCATTCACCTCGCCGC
CGCTCACACGACGACGAAAAAATCGTCTGTCCGCTCTTGCGAACGGGAGC
TGACGTGAATGGGGAAGAGACTGTTTAAACTGGTATCGAAGGGAGCGACA
CCATCACAATGGGCGGCATGGCCCAGAGCGCCCCTGGAGCACGCAGTGGC
GGAGGGTGATACGGACCTGACCTTGACGCTCCTAAAAGCAGGGGCCGACA
GAGGTGCGGGCTGGGATGGATGCGATGGCCGCACGTTGCTGGATGCGGCG
ACCGAGGGAGGGAGCGAGGAGGTGGTGTCCACTTTGCTCGACACAGGAGG
GTTGGCGGAGTTGAACGCCATATCTGGTGGCAAGAAGATGACTGCCCTCT
ATCGGGCCAGCAAGGGCGGCCACACAGCTGAGGCGCGTGTGTTGGTGCTT
GCAGGCGCGGACGGGAGCCTGCTCGACTCTCGTACTCTCAGCGCGTTGCA
CCACGCCGTCAAAGGTGGTCACCTCCAGCTCGCCGGAGATGTTGTGGTAG
CTGGCACTGACCACGACGCAAAGTGTACCAATGGCAACACCCCCATTCAC
CTCGCCGCCGCTCACACGACGACGAAAAAATCGTCTGTCCGCTCTTGCGA
ACGGGAGCTGACGTGA
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