mRNA_S-dermatodea_contig13023.1830.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13023.1830.1
Unique NamemRNA_S-dermatodea_contig13023.1830.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13023.1830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13023contigS-dermatodea_contig13023:4684..5553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924271.477113-CDS-S-dermatodea_contig13023:4683..47201622924271.477113-CDS-S-dermatodea_contig13023:4683..4720Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13023 4684..4720 +
1694079140.563592-CDS-S-dermatodea_contig13023:4683..47201694079140.563592-CDS-S-dermatodea_contig13023:4683..4720Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13023 4684..4720 +
1622924271.4864347-CDS-S-dermatodea_contig13023:5223..55521622924271.4864347-CDS-S-dermatodea_contig13023:5223..5552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13023 5224..5552 +
1694079140.5742705-CDS-S-dermatodea_contig13023:5223..55521694079140.5742705-CDS-S-dermatodea_contig13023:5223..5552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13023 5224..5552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13023.1830.1prot_S-dermatodea_contig13023.1830.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13023 4684..5552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13023.1830.1

>prot_S-dermatodea_contig13023.1830.1 ID=prot_S-dermatodea_contig13023.1830.1|Name=mRNA_S-dermatodea_contig13023.1830.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
GDAPSRTRRRLADDTVFRAGRHRSHPFGAHALPPPPRALPGGFPTGRGRC
GGGKRPRFYRNPPGWFSCRHGACGFGSRRGGRRLGSFVCRREGRGCKNGF
VGFQADLAGVHRGGWPAAVTSE
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mRNA from alignment at S-dermatodea_contig13023:4684..5553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13023.1830.1 ID=mRNA_S-dermatodea_contig13023.1830.1|Name=mRNA_S-dermatodea_contig13023.1830.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=870bp|location=Sequence derived from alignment at S-dermatodea_contig13023:4684..5553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGACGCTCCTAGCAGAACACGCAGACGACTTGCTGGTGAGGGTGTCGG
CGGGGCGGAGAGCGGAGCAGAGTGCGCGCGCCCGTGTTTCGGCCTGTAGT
TCTCGGTGGTAGAAATTGTGCTTGTGGGATACAGTAGCTCGGTACAGGCG
TCGCTTGCGGGGGCGCTAAATAGAAGAAGAATCTCGGTTCGAGCTGCCGC
CGTGAGACCAGGGAGAGGAGGAAGCGGCTGGCAGCTCATGGGCGCTGTCG
GGTGTATTCTAGATCAGCAACGAGACTCTTTTGTTTATTTGTATTTTATA
CTTTTTTTTACTCAGTACTCAGTAGTGTGCGTCGCATTTGCGCAAGCACA
CATAAATGCGTTGCTTCGGTTTCTCCCTCGCATTTGCGCATGCATGCATC
CCGAGGTGGTTTACGTCTGGCAAATCATATCATATATACCGGGAAAAAAT
ATGACTATACCCATTCTTAACCCACACCCCGACGCCCCACCCCCCCCACC
CCCTCTTGCCCAAATAACGGGCGAACGTTCCGCTGCTCAGACGATACTGT
CTTCCGAGCTGGCAGACACCGCTCTCACCCCTTCGGAGCTCATGCCCTAC
CTCCACCGCCACGGGCACTGCCCGGAGGATTTCCAACAGGCCGCGGCAGG
TGTGGAGGGGGAAAACGCCCCCGGTTTTATCGAAACCCCCCTGGCTGGTT
CTCGTGCCGCCATGGCGCTTGCGGATTCGGTTCTCGCCGCGGCGGCCGAA
GGCTTGGTTCGTTTGTTTGCCGACGGGAGGGAAGGGGGTGCAAGAACGGG
TTTGTCGGTTTCCAAGCAGACTTGGCAGGCGTGCATCGCGGAGGCTGGCC
GGCGGCGGTTACGAGTGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13023:4684..5553+

>mRNA_S-dermatodea_contig13023.1830.1 ID=mRNA_S-dermatodea_contig13023.1830.1|Name=mRNA_S-dermatodea_contig13023.1830.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig13023:4684..5553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGACGCTCCTAGCAGAACACGCAGACGACTTGCTGGGCGACGCTCCTA
GCAGAACACGCAGACGACTTGCTGACGATACTGTCTTCCGAGCTGGCAGA
CACCGCTCTCACCCCTTCGGAGCTCATGCCCTACCTCCACCGCCACGGGC
ACTGCCCGGAGGATTTCCAACAGGCCGCGGCAGGTGTGGAGGGGGAAAAC
GCCCCCGGTTTTATCGAAACCCCCCTGGCTGGTTCTCGTGCCGCCATGGC
GCTTGCGGATTCGGTTCTCGCCGCGGCGGCCGAAGGCTTGGTTCGTTTGT
TTGCCGACGGGAGGGAAGGGGGTGCAAGAACGGGTTTGTCGGTTTCCAAG
CAGACTTGGCAGGCGTGCATCGCGGAGGCTGGCCGGCGGCGGTTACGAGT
GAAACGATACTGTCTTCCGAGCTGGCAGACACCGCTCTCACCCCTTCGGA
GCTCATGCCCTACCTCCACCGCCACGGGCACTGCCCGGAGGATTTCCAAC
AGGCCGCGGCAGGTGTGGAGGGGGAAAACGCCCCCGGTTTTATCGAAACC
CCCCTGGCTGGTTCTCGTGCCGCCATGGCGCTTGCGGATTCGGTTCTCGC
CGCGGCGGCCGAAGGCTTGGTTCGTTTGTTTGCCGACGGGAGGGAAGGGG
GTGCAAGAACGGGTTTGTCGGTTTCCAAGCAGACTTGGCAGGCGTGCATC
GCGGAGGCTGGCCGGCGGCGGTTACGAGTGAA
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