mRNA_S-dermatodea_contig12998.1816.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12998.1816.1
Unique NamemRNA_S-dermatodea_contig12998.1816.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12998.1816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12998contigS-dermatodea_contig12998:3161..3569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005910.1
Exons1
Model size411
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.4016807-CDS-S-dermatodea_contig12998:3160..35681622924270.4016807-CDS-S-dermatodea_contig12998:3160..3568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12998 3161..3568 +
1694079139.8335094-CDS-S-dermatodea_contig12998:3160..35681694079139.8335094-CDS-S-dermatodea_contig12998:3160..3568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12998 3161..3568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12998.1816.1prot_S-dermatodea_contig12998.1816.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12998 3161..3568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12998.1816.1

>prot_S-dermatodea_contig12998.1816.1 ID=prot_S-dermatodea_contig12998.1816.1|Name=mRNA_S-dermatodea_contig12998.1816.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
VAALSGFTTIDAEVEFSSKNASDSTNSPPQTDHQAVDGDNTEEKEKDTDD
PPAPEEAPPIFLTFRFRREPLLKPRGAGEDPGSDSEREITAAARQDGVEI
IDLDDENESDAGGDGSGAPGPKVGLENLRRGGSQEQ
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mRNA from alignment at S-dermatodea_contig12998:3161..3569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12998.1816.1 ID=mRNA_S-dermatodea_contig12998.1816.1|Name=mRNA_S-dermatodea_contig12998.1816.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=409bp|location=Sequence derived from alignment at S-dermatodea_contig12998:3161..3569+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGCCGCGCTGAGCGGCTTCACGACCATCGACGCCGAGGTCGAGTTCTC
CTCAAAAAACGCCTCCGATTCCACGAACTCCCCCCCACAAACCGACCACC
AAGCAGTGGACGGCGACAACACCGAAGAAAAAGAAAAAGACACGGACGAC
CCGCCAGCGCCCGAGGAGGCACCGCCCATTTTCCTGACATTCCGATTTCG
AAGGGAGCCGCTCTTGAAGCCTCGGGGAGCCGGCGAAGACCCAGGGAGCG
ACAGCGAGCGCGAAATAACGGCCGCGGCGCGACAGGACGGCGTCGAGATA
ATAGACCTTGACGACGAAAACGAATCGGACGCGGGGGGCGATGGCAGCGG
CGCACCAGGACCTAAAGTCGGCCTCGAAAATCTCCGCCGTGGCGGGAGCC
AGGAGCAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12998:3161..3569+

>mRNA_S-dermatodea_contig12998.1816.1 ID=mRNA_S-dermatodea_contig12998.1816.1|Name=mRNA_S-dermatodea_contig12998.1816.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig12998:3161..3569+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGCCGCGCTGAGCGGCTTCACGACCATCGACGCCGAGGTCGAGTTCTC
CTCAAAAAACGCCTCCGATTCCACGAACTCCCCCCCACAAACCGACCACC
AAGCAGTGGACGGCGACAACACCGAAGAAAAAGAAAAAGACACGGACGAC
CCGCCAGCGCCCGAGGAGGCACCGCCCATTTTCCTGACATTCCGATTTCG
AAGGGAGCCGCTCTTGAAGCCTCGGGGAGCCGGCGAAGACCCAGGGAGCG
ACAGCGAGCGCGAAATAACGGCCGCGGCGCGACAGGACGGCGTCGAGATA
ATAGACCTTGACGACGAAAACGAATCGGACGCGGGGGGCGATGGCAGCGG
CGCACCAGGACCTAAAGTCGGCCTCGAAAATCTCCGCCGTGGCGGGAGCC
AGGAGCAAGTTGCCGCGCTGAGCGGCTTCACGACCATCGACGCCGAGGTC
GAGTTCTCCTCAAAAAACGCCTCCGATTCCACGAACTCCCCCCCACAAAC
CGACCACCAAGCAGTGGACGGCGACAACACCGAAGAAAAAGAAAAAGACA
CGGACGACCCGCCAGCGCCCGAGGAGGCACCGCCCATTTTCCTGACATTC
CGATTTCGAAGGGAGCCGCTCTTGAAGCCTCGGGGAGCCGGCGAAGACCC
AGGGAGCGACAGCGAGCGCGAAATAACGGCCGCGGCGCGACAGGACGGCG
TCGAGATAATAGACCTTGACGACGAAAACGAATCGGACGCGGGGGGCGAT
GGCAGCGGCGCACCAGGACCTAAAGTCGGCCTCGAAAATCTCCGCCGTGG
CGGGAGCCAGGAGCAA
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