prot_S-dermatodea_contig12989.1813.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12989.1813.1
Unique Nameprot_S-dermatodea_contig12989.1813.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length720
Homology
BLAST of mRNA_S-dermatodea_contig12989.1813.1 vs. uniprot
Match: A0A6H5K3J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J5_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 2.790e-82
Identity = 333/811 (41.06%), Postives = 387/811 (47.72%), Query Frame = 0
Query:    1 QVTDVQFSPDGYILASAAADGQVKLWDLRAGKPMHTFQASDKLACSGPVRALRXXXXXXXXXXXXXXXXXXXXXIEFMELFCPPFRTRNDFCG-RAITYDPDGQSLYCASPSGLKRWSWDNDTASARLEAMGEVAWGKVGAGALHYNADGRQ---LLAASCSGSRVSVWAVDLDDPSTRCPQQHEPGGSSSSATPSGGTRGTGTSRSPTESSSAAAVTPSRNSASPISVSSAGNASDAGEGADARAPS--PGDQQAQPTGESRNRDESRDGLFQDSKRDAAKQRDESPGD----------------APTFQVLGHH--LFPSTAADKKSPTPTGSSAAAPAATVA----VATPIAPGAG--PPXXXXXXXXXXXXXXXXXXXXXXTDDAVASVSSSGRHRSIGTSISDTLVISSAXXXXXXXXXXXXXXXEGGVISRDGGR----SAWPDPAPGKEDGSDIV-----------------------GKRDKTRAGTDSGH--KWHKRVTGAFAG--SGADDKT-------AGGRGSSG-SRXXXXXEGALAKEVPGGLIAAAXXXXXXXXXXXAGENPRFPSDFRAVRSWLDDPRAGGASLESLHVGGRGEGEGDSPPLLASAE------CSPPLHRHDPXXXXXXCQRPPDDFR--EGLAEVEPRASAVGFPVGGXXXXXXXXXXXXXXXXXXPPAPAPTPAPGTVSG----------------------VSGRGHTSEGAREGDGRIVGD-FGDGRGGDGGDYCGDRELGMTRPRTATRRWDRPGPPGEDEVIAKTLLSRAGVTSTLSIR 711
            QVTDVQFSPDG+ILASAAADGQVKLWDLRAGKPMHTFQA     CSG VRA+ XXXXXXXXXXXXXXXXXXXXX EFMELFCP   T  D C  RAIT+DPDGQ +YCASPSGL+RWSWDN  ASA+LEAMG+V WGKVGAGALHYNADG+Q   L AAS S       +  LD P+          G++++AT S                             P   S +    + G+ ADA+ P   P      P      R  SRD            +++ S GD                 P FQVLG    L P+ A +K  P+                  V  P + G G              XXXXXXXXXXXXTDDAVASV+ S RHRS+GTSISDTLVI+                       R GGR    +AW +PAPGK+DG + V                       G+R  T  G D G   KWHKRV GAFAG    ADD+        +GG GS G +R     +   A+    G   AA           +G   R   D     SW++   A G +   +  GG      DSPPLL S E       +P    ++P       +R PD  +  +    V  R+SAVGFP+                          T A G++SG                                  E +G  V D FGDG G  GG   G  ELGMTRPRTATRRWDRPGPPGEDEVIAKTLLSRA  TSTLS R
Sbjct:  133 QVTDVQFSPDGHILASAAADGQVKLWDLRAGKPMHTFQA-----CSGAVRAIXXXXXXXXXXXXXXXXXXXXXXXEFMELFCP---TAPDTCPTRAITFDPDGQKMYCASPSGLRRWSWDNHIASAQLEAMGDVPWGKVGAGALHYNADGQQGRNLGAASES-------SAPLDTPAR---------GATTTATES-----------------------------PSDPSLSTTDREYGD-ADAKVPESRPSRGNTFPASRDGQRSHSRDSK-------PTMEKEASGGDDGSXXXXXXXXXXXXXMPAFQVLGRQVVLLPTAAEEKAKPSSPXXXXXXXXXXXXXXXXVGGPASAGGGRIQNRHAARAEAVAXXXXXXXXXXXXTDDAVASVAGSIRHRSVGTSISDTLVIADGCTADQ-------------ADDRAGGREHRPAAWSEPAPGKDDGGNYVRDCGRGVAAALGVVAAGDRHRLSGERRAT-GGADDGDECKWHKRVAGAFAGVEGTADDEKGMERRDDSGGDGSGGKTRGKGNADEKEARREGDGTDRAANVGVP------SGVTSRMTVDPWPKDSWVE---AEGRNRAGVPGGGE-----DSPPLLGSPEPAPAAASNPARSMNEPPSFPSSSRRSPDRPQPSDKTDTVVTRSSAVGFPI--------------------------TTADGSISGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPEPEGLSVADIFGDGGGDCGGG--GSDELGMTRPRTATRRWDRPGPPGEDEVIAKTLLSRATATSTLSNR 826          
BLAST of mRNA_S-dermatodea_contig12989.1813.1 vs. uniprot
Match: D8LQ17_ECTSI (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ17_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.200e-53
Identity = 292/772 (37.82%), Postives = 337/772 (43.65%), Query Frame = 0
Query:    3 TDVQFSPDGYILASAAADGQVKLWDLRAGKPMHTFQASDKLACSGPVRALRXXXXXXXXXXXXXXXXXXXXXIEFMELFCPPFRTRNDFCG-RAITYDPDGQSLYCASPSGLKRWSWDNDTASARLEAMGEVAWGKVGAGALHYNADGRQLLAASCSGSRVSVWAVDLDDPSTRCPQQHEPGGSSSSATPSGGTRGTGTSRSPTESSSAAAVTPSRNSASPISVSSAGNASDAGEGADARAPSPGDQQAQPTGESRNRDESRDGLFQDSKRDAAKQRDESPGDAPTFQVLGHH--LFPSTAADK-KSPTPTGSSAAAP-----AATVAVATPIAPGAGPPXXXXXXXXXXXXXXXXXXXXXXTDDAVASVSSSGRHRSIGTSISDTLVISSAXXXXXXXXXXXXXXXEGGVIS----RDGGR----SAWPDPAPGKEDGSD--------------IVGKRDKTRAGTDSGH-----------KWHKRVTGAFAG--SGADDKT-------AGGRGSSG-SRXXXXXEGALAKEVPGGLIAAAXXXXXXXXXXXAGENPRFPSDFRAVRSWLDDPRAGGASLESLHVGGRGEGEGDSPPLLASAE------CSPPLHRHDPXXXXXXCQRPPD--DFREGLAEVEPRASAVGFPVG-GXXXXXXXXXXXXXXXXXXPPAPAPTPAPGTVSGVSGRGHTSEGAREGDGRIVGD-FGDGRGGDGGDYCGDR-ELGMTRPRTATRRWDRPGPPGEDEVIAKTLLSRAGVTSTLSIR 711
            TDVQFSPDG+ILASAA                                   XXXXXXXXXXXXXXXXX     EFMELFCP   T  D C  RAIT+DPDGQ +YCASPSGL+RWSWDNDTASARLEAMG+V WGKVGAGALHYNADG+Q        SR + +    D   +                                         SR+S   +   ++G                GD                     D                P FQVLG    L P+ A +K +S +P G  AA P       TV   +    G                 XXXXXXXXXTDDAVASV+ S RHRS+GTSISDTLVI+                 +GG       R GGR    +AW +PAPGK+DG +              +V   D+ R G +              KWHKRV GAFAG    ADD+        +GG GS G +R     +   A+    G   AA           +G  PRF      V  W  D R          V G G+   DSPPLL S E       +P   +++P       +R PD    RE    V  R+SAVGFP+      XXXXXXXXXXXXXXX                           E +G  V D FG               ELGMTRPRTATRRWDRPGPPG+DEVIAKTLLSRA  TSTLS R
Sbjct:  156 TDVQFSPDGHILASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EFMELFCP---TAPDTCPTRAITFDPDGQKMYCASPSGLRRWSWDNDTASARLEAMGDVPWGKVGAGALHYNADGQQ----QSRPSRGNTFPASRDGQRSH----------------------------------------SRDSKPTMEKEASG----------------GD---------------------DGSXXXXCXXXXXXAGMPAFQVLGRQVVLLPTAAEEKVRSSSPLGGPAATPXXXXSGVTVGGPSSAVGGRLQNRHAARAEAVAATVXXXXXXXXXTDDAVASVAGSIRHRSVGTSISDTLVIA-----------------DGGTADQADDRAGGREHRPAAWSEPAPGKDDGGNYGRDSGRGVAAALGVVAAGDRHRLGGERRXXXXXXXXXDECKWHKRVAGAFAGVEGTADDEKGVERRGDSGGDGSGGKNRGKRTADEKEARREEDGTDRAANAGVS------SGVTPRF-----TVNPWPKDSRVEAGGRIRTEVPGGGQ---DSPPLLGSPEPAPAAASNPARSKNEPPSFPSSSRRSPDRPQPREKTHAVVTRSSAVGFPITTADGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSEPEGLSVADIFGXXXXXXXXXXXXXXDELGMTRPRTATRRWDRPGPPGDDEVIAKTLLSRATATSTLSNR 807          
BLAST of mRNA_S-dermatodea_contig12989.1813.1 vs. uniprot
Match: A0A836CLK5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.430e-11
Identity = 82/186 (44.09%), Postives = 102/186 (54.84%), Query Frame = 0
Query:    1 QVTDVQFSPDGYILASAAADGQVKLWDLRAGKPMHTFQASDKLACSGP-VRALRXXXXXXXXXXXXXXXXXXXXXIEFMELFCPPFRTRNDFCGRAITYDPDGQSLYCASPSGLKRWSWDNDTASARLEAMGEVAWGKVGAGALHYNADGRQLLAASCSGSRVSVWAVDLDD----PSTRCPQQHE 181
            +V +VQFSPDG++LAS A DG V++WD+RAGK +H F A    +  G  VRA  XXXXXXXXXXXXXXXXXXXXX E MELFC                          SP             S++  AM   A+   G  ALHYN +G Q++AA+ + + VS+WA D+DD    P    P Q E
Sbjct:  151 EVCEVQFSPDGFLLASGARDGDVRIWDVRAGKLLHAFAACGGGSGGGSGVRAXXXXXXXXXXXXXXXXXXXXXXXXEEMELFC------------------------ATSPE------------SSQFHAM---AFNAEGNRALHYNPEG-QVVAATSTSNFVSIWAFDVDDAPLDPDGETPTQQE 296          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12989.1813.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K3J5_9PHAE2.790e-8241.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ17_ECTSI1.200e-5337.82Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
A0A836CLK5_9STRA8.430e-1144.09WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 30..74
e-value: 4.0E-4
score: 29.7
coord: 1..27
e-value: 0.8
score: 17.6
coord: 81..117
e-value: 160.0
score: 3.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..36
score: 16.223
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 49..76
score: 8.57
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 93..228
e-value: 1.3E-6
score: 29.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..82
e-value: 4.0E-19
score: 70.9
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 1..42
e-value: 3.8E-5
score: 23.9
NoneNo IPR availablePANTHERPTHR19845KATANIN P80 SUBUNITcoord: 2..257
NoneNo IPR availablePANTHERPTHR19845:SF0KATANIN P80 WD40 REPEAT-CONTAINING SUBUNIT B1coord: 2..257
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 14..28
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..83
score: 18.115
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12989contigS-dermatodea_contig12989:718..6536 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12989.1813.1mRNA_S-dermatodea_contig12989.1813.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12989 718..6536 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12989.1813.1 ID=prot_S-dermatodea_contig12989.1813.1|Name=mRNA_S-dermatodea_contig12989.1813.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=720bp
QVTDVQFSPDGYILASAAADGQVKLWDLRAGKPMHTFQASDKLACSGPVR
ALRFNPQEFLLAASTSDRTVKLYDIEFMELFCPPFRTRNDFCGRAITYDP
DGQSLYCASPSGLKRWSWDNDTASARLEAMGEVAWGKVGAGALHYNADGR
QLLAASCSGSRVSVWAVDLDDPSTRCPQQHEPGGSSSSATPSGGTRGTGT
SRSPTESSSAAAVTPSRNSASPISVSSAGNASDAGEGADARAPSPGDQQA
QPTGESRNRDESRDGLFQDSKRDAAKQRDESPGDAPTFQVLGHHLFPSTA
ADKKSPTPTGSSAAAPAATVAVATPIAPGAGPPRRSSRAAAVAAAVAAVA
SAKAATDDAVASVSSSGRHRSIGTSISDTLVISSASGGGGGRGEGGGGGG
EGGVISRDGGRSAWPDPAPGKEDGSDIVGKRDKTRAGTDSGHKWHKRVTG
AFAGSGADDKTAGGRGSSGSRGRGRGEGALAKEVPGGLIAAAAAEVAAVA
AAAAGENPRFPSDFRAVRSWLDDPRAGGASLESLHVGGRGEGEGDSPPLL
ASAECSPPLHRHDPPPPSSSCQRPPDDFREGLAEVEPRASAVGFPVGGGG
GGAAVAAVTAARNSSSPPAPAPTPAPGTVSGVSGRGHTSEGAREGDGRIV
GDFGDGRGGDGGDYCGDRELGMTRPRTATRRWDRPGPPGEDEVIAKTLLS
RAGVTSTLSIRCETWKWGC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR024977Apc4_WD40_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf