prot_S-dermatodea_contig12980.1809.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig12980.1809.1
Unique Name	prot_S-dermatodea_contig12980.1809.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	124

Homology

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 9.470e-67
Identity = 109/121 (90.08%), Postives = 116/121 (95.87%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            V QLAGYVSEHSAYHHGEASLNGTI  MAQ++TGSNNLNLLTP GQFGTRLMGGKDAASPRYIFTAL+KAARAVFHPDDDALLTYLDDDGLSIEPEFY+P++PLILVNG+DGIGTGWSS V
Sbjct:  673 VVQLAGYVSEHSAYHHGEASLNGTITAMAQNFTGSNNLNLLTPGGQFGTRLMGGKDAASPRYIFTALEKAARAVFHPDDDALLTYLDDDGLSIEPEFYMPIIPLILVNGSDGIGTGWSSNV 793

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S3XY17_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY17_HETAK)

HSP 1 Score: 210 bits (535), Expect = 1.450e-62
Identity = 97/121 (80.17%), Postives = 111/121 (91.74%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            VAQLAGY+SEHSAYHHGE SL GTI+GMAQ++ GSNN+NLL PSGQFGTR+MGGKD+ASPRY+FT L+K ARA+FH DDD LLTYLDDDG SIEPE+YVPVLP++LVNG+DGIGTGWSS V
Sbjct:  195 VAQLAGYISEHSAYHHGEMSLTGTIIGMAQNFVGSNNINLLFPSGQFGTRIMGGKDSASPRYVFTRLEKIARAIFHKDDDPLLTYLDDDGKSIEPEYYVPVLPMVLVNGSDGIGTGWSSSV 315

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S4BNY5_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNY5_CHRCT)

HSP 1 Score: 201 bits (511), Expect = 6.480e-62
Identity = 95/121 (78.51%), Postives = 107/121 (88.43%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            VAQLAGYVSEHSAYHHGE SL GTIVGMAQ +TGSNN++LL PSGQFGTRLMGGKDAASPRYIFT L +  R +FHPDDDALL +L++DG SIEP FYVP+LP++LVNG DGIGTGWS+ V
Sbjct:  127 VAQLAGYVSEHSAYHHGEQSLAGTIVGMAQGFTGSNNISLLYPSGQFGTRLMGGKDAASPRYIFTKLPQLTRLIFHPDDDALLNFLEEDGQSIEPAFYVPILPMVLVNGADGIGTGWSTNV 247

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A8J9T3Z1_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T3Z1_PHATR)

HSP 1 Score: 197 bits (501), Expect = 1.940e-61
Identity = 91/121 (75.21%), Postives = 106/121 (87.60%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            VAQL GYV+EHSAYHHGEASL  TIV MAQ++ GSNN+NLLTPSGQFGTR MGGKDAAS RYIFT L+   R +FHPDDD LL+Y++DDG+++EPEFYVPV+P+ILVNG DGIGTGWS+ V
Sbjct:   99 VAQLTGYVAEHSAYHHGEASLQATIVNMAQNFCGSNNINLLTPSGQFGTRRMGGKDAASARYIFTKLEPITRTIFHPDDDELLSYINDDGVTVEPEFYVPVIPMILVNGADGIGTGWSTSV 219

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S0ITE3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0ITE3_9EUKA)

HSP 1 Score: 199 bits (507), Expect = 2.750e-61
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            VAQLAGYVSEHSAYHHGE SL GTIVGMAQ +TGSNN+ LL P+GQFGTRLMGGKDAASPRYIFT L K  R +FHPDDD LL +L+DDG SIEP +YVP+LPL+LVNG DGIGTGWS+ V
Sbjct:   39 VAQLAGYVSEHSAYHHGETSLAGTIVGMAQTHTGSNNIALLYPAGQFGTRLMGGKDAASPRYIFTRLPKLTRLLFHPDDDCLLNFLEDDGQSIEPSYYVPILPLVLVNGADGIGTGWSTSV 159

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7R9ZGL7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGL7_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.070e-61
Identity = 100/121 (82.64%), Postives = 111/121 (91.74%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            VAQLAGYVSEHSAYHHGEASLNGTIV MAQ++ GSNN+NLLTPSGQFGTR MGGKDAASPRYIFT L+   R +FHPDDDALL+YL+DDGLSIEPEFY+PV+P+ LVNG+DGIGTGWSS V
Sbjct:  342 VAQLAGYVSEHSAYHHGEASLNGTIVNMAQNFCGSNNINLLTPSGQFGTRRMGGKDAASPRYIFTKLENITRKIFHPDDDALLSYLNDDGLSIEPEFYMPVIPMALVNGSDGIGTGWSSSV 462

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S2XMN6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMN6_9STRA)

HSP 1 Score: 209 bits (533), Expect = 6.060e-61
Identity = 97/121 (80.17%), Postives = 109/121 (90.08%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            VAQLAGY+ EHSAYHHGEASLNGTI+ MAQ + GSNNLN+LTPSGQFGTR MGGKDAASPRYIFT L+K  R +FHPDDDALL YL+DDGLSIEPE+Y+PV+P+ LVNG+DGIGTGWSS V
Sbjct:  191 VAQLAGYIGEHSAYHHGEASLNGTIINMAQSFCGSNNLNVLTPSGQFGTRRMGGKDAASPRYIFTMLEKVTRTIFHPDDDALLNYLNDDGLSIEPEYYMPVIPMTLVNGSDGIGTGWSSSV 311

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S1Z3I8_9STRA (DNA topoisomerase 2 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3I8_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.480e-60
Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            VAQLAGY+ EHSAYHHGEASL GTIV MAQ + GSNN+NLLTPSGQFGTR MGGKDAASPRYIFT L+K  R +FHPDDDALLTYL DDGLSIEPEFY+PV+P++LVNG++GIGTGWSS V
Sbjct:  831 VAQLAGYIGEHSAYHHGEASLTGTIVNMAQSFVGSNNVNLLTPSGQFGTRRMGGKDAASPRYIFTKLEKITRTIFHPDDDALLTYLHDDGLSIEPEFYMPVIPMVLVNGSEGIGTGWSSNV 951

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A482UEJ1_9ARCH (TOP4c domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UEJ1_9ARCH)

HSP 1 Score: 197 bits (501), Expect = 4.560e-60
Identity = 93/121 (76.86%), Postives = 105/121 (86.78%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            VAQLAGYVSEH+AYHHGEASL  T+VGMAQ++ GSNN+NLL PSGQFGTRLMGGKDAAS RYIFT L    RA+F P+DDALL YLDDDG SIEPE YVP++PL+LVNG +GIGTGWS+ V
Sbjct:  107 VAQLAGYVSEHAAYHHGEASLGATVVGMAQNFVGSNNINLLVPSGQFGTRLMGGKDAASARYIFTRLTPITRAIFRPEDDALLKYLDDDGQSIEPEHYVPIIPLVLVNGAEGIGTGWSTSV 227

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BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S3XNX1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNX1_HETAK)

HSP 1 Score: 205 bits (522), Expect = 4.930e-60
Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 0

Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 121
            VAQLAGYVSEH+AYHHGEASLN TIVGMAQ++ GSNN+NLL PSGQFGTRLMGGKDAASPRYIFT L+  AR +FHPDDD LL +LDDDG SIEP+ Y+PVLP++LVNG DGIGTGWSS V
Sbjct:  264 VAQLAGYVSEHAAYHHGEASLNSTIVGMAQNFVGSNNVNLLFPSGQFGTRLMGGKDAASPRYIFTRLEAVARLIFHPDDDPLLNFLDDDGQSIEPDHYLPVLPMVLVNGADGIGTGWSSSV 384

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KFS2_9PHAE	9.470e-67	90.08	DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 ...	[more]
A0A7S3XY17_HETAK	1.450e-62	80.17	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S4BNY5_CHRCT	6.480e-62	78.51	Hypothetical protein (Fragment) n=1 Tax=Chrysotila...	[more]
A0A8J9T3Z1_PHATR	1.940e-61	75.21	Hypothetical protein (Fragment) n=1 Tax=Phaeodacty...	[more]
A0A7S0ITE3_9EUKA	2.750e-61	78.51	Hypothetical protein (Fragment) n=1 Tax=Calcidiscu...	[more]
A0A7R9ZGL7_9STRA	3.070e-61	82.64	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A7S2XMN6_9STRA	6.060e-61	80.17	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0A7S1Z3I8_9STRA	1.480e-60	80.99	DNA topoisomerase 2 n=1 Tax=Ditylum brightwellii T...	[more]
A0A482UEJ1_9ARCH	4.560e-60	76.86	TOP4c domain-containing protein (Fragment) n=1 Tax...	[more]
A0A7S3XNX1_HETAK	4.930e-60	80.17	Hypothetical protein (Fragment) n=2 Tax=Heterosigm...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001154	DNA topoisomerase II, eukaryotic-type	PRINTS	PR01158	TOPISMRASEII	coord: 75..95 score: 49.75 coord: 45..67 score: 78.56
IPR013758	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	GENE3D	3.90.199.10		coord: 1..123 e-value: 2.1E-56 score: 193.0
IPR002205	DNA topoisomerase, type IIA, subunit A/C-terminal	PFAM	PF00521	DNA_topoisoIV	coord: 1..122 e-value: 4.3E-49 score: 167.6
None	No IPR available	PANTHER	PTHR10169	DNA TOPOISOMERASE/GYRASE	coord: 1..121
IPR013760	DNA topoisomerase, type IIA-like domain superfamily	SUPERFAMILY	56719	Type II DNA topoisomerase	coord: 1..121

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig12980	contig	S-dermatodea_contig12980:813..2112 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig12980.1809.1	mRNA_S-dermatodea_contig12980.1809.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig12980 813..2112 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig12980.1809.1 ID=prot_S-dermatodea_contig12980.1809.1|Name=mRNA_S-dermatodea_contig12980.1809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTR
LMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVP
VLPLILVNGTDGIGTGWSSQVCA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001154	TopoII_euk
IPR013758	Topo_IIA_A/C_ab
IPR002205	Topo_IIA_A/C
IPR013760	Topo_IIA-like_dom_sf