mRNA_S-dermatodea_contig12980.1809.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12980.1809.1
Unique NamemRNA_S-dermatodea_contig12980.1809.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 9.470e-67
Identity = 109/121 (90.08%), Postives = 116/121 (95.87%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            V QLAGYVSEHSAYHHGEASLNGTI  MAQ++TGSNNLNLLTP GQFGTRLMGGKDAASPRYIFTAL+KAARAVFHPDDDALLTYLDDDGLSIEPEFY+P++PLILVNG+DGIGTGWSS V
Sbjct:  673 VVQLAGYVSEHSAYHHGEASLNGTITAMAQNFTGSNNLNLLTPGGQFGTRLMGGKDAASPRYIFTALEKAARAVFHPDDDALLTYLDDDGLSIEPEFYMPIIPLILVNGSDGIGTGWSSNV 793          
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S3XY17_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY17_HETAK)

HSP 1 Score: 210 bits (535), Expect = 1.450e-62
Identity = 97/121 (80.17%), Postives = 111/121 (91.74%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            VAQLAGY+SEHSAYHHGE SL GTI+GMAQ++ GSNN+NLL PSGQFGTR+MGGKD+ASPRY+FT L+K ARA+FH DDD LLTYLDDDG SIEPE+YVPVLP++LVNG+DGIGTGWSS V
Sbjct:  195 VAQLAGYISEHSAYHHGEMSLTGTIIGMAQNFVGSNNINLLFPSGQFGTRIMGGKDSASPRYVFTRLEKIARAIFHKDDDPLLTYLDDDGKSIEPEYYVPVLPMVLVNGSDGIGTGWSSSV 315          
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S4BNY5_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNY5_CHRCT)

HSP 1 Score: 201 bits (511), Expect = 6.480e-62
Identity = 95/121 (78.51%), Postives = 107/121 (88.43%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            VAQLAGYVSEHSAYHHGE SL GTIVGMAQ +TGSNN++LL PSGQFGTRLMGGKDAASPRYIFT L +  R +FHPDDDALL +L++DG SIEP FYVP+LP++LVNG DGIGTGWS+ V
Sbjct:  127 VAQLAGYVSEHSAYHHGEQSLAGTIVGMAQGFTGSNNISLLYPSGQFGTRLMGGKDAASPRYIFTKLPQLTRLIFHPDDDALLNFLEEDGQSIEPAFYVPILPMVLVNGADGIGTGWSTNV 247          
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A8J9T3Z1_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T3Z1_PHATR)

HSP 1 Score: 197 bits (501), Expect = 1.940e-61
Identity = 91/121 (75.21%), Postives = 106/121 (87.60%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            VAQL GYV+EHSAYHHGEASL  TIV MAQ++ GSNN+NLLTPSGQFGTR MGGKDAAS RYIFT L+   R +FHPDDD LL+Y++DDG+++EPEFYVPV+P+ILVNG DGIGTGWS+ V
Sbjct:   99 VAQLTGYVAEHSAYHHGEASLQATIVNMAQNFCGSNNINLLTPSGQFGTRRMGGKDAASARYIFTKLEPITRTIFHPDDDELLSYINDDGVTVEPEFYVPVIPMILVNGADGIGTGWSTSV 219          
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S0ITE3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0ITE3_9EUKA)

HSP 1 Score: 199 bits (507), Expect = 2.750e-61
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            VAQLAGYVSEHSAYHHGE SL GTIVGMAQ +TGSNN+ LL P+GQFGTRLMGGKDAASPRYIFT L K  R +FHPDDD LL +L+DDG SIEP +YVP+LPL+LVNG DGIGTGWS+ V
Sbjct:   39 VAQLAGYVSEHSAYHHGETSLAGTIVGMAQTHTGSNNIALLYPAGQFGTRLMGGKDAASPRYIFTRLPKLTRLLFHPDDDCLLNFLEDDGQSIEPSYYVPILPLVLVNGADGIGTGWSTSV 159          
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7R9ZGL7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGL7_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.070e-61
Identity = 100/121 (82.64%), Postives = 111/121 (91.74%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            VAQLAGYVSEHSAYHHGEASLNGTIV MAQ++ GSNN+NLLTPSGQFGTR MGGKDAASPRYIFT L+   R +FHPDDDALL+YL+DDGLSIEPEFY+PV+P+ LVNG+DGIGTGWSS V
Sbjct:  342 VAQLAGYVSEHSAYHHGEASLNGTIVNMAQNFCGSNNINLLTPSGQFGTRRMGGKDAASPRYIFTKLENITRKIFHPDDDALLSYLNDDGLSIEPEFYMPVIPMALVNGSDGIGTGWSSSV 462          
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S2XMN6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMN6_9STRA)

HSP 1 Score: 209 bits (533), Expect = 6.060e-61
Identity = 97/121 (80.17%), Postives = 109/121 (90.08%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            VAQLAGY+ EHSAYHHGEASLNGTI+ MAQ + GSNNLN+LTPSGQFGTR MGGKDAASPRYIFT L+K  R +FHPDDDALL YL+DDGLSIEPE+Y+PV+P+ LVNG+DGIGTGWSS V
Sbjct:  191 VAQLAGYIGEHSAYHHGEASLNGTIINMAQSFCGSNNLNVLTPSGQFGTRRMGGKDAASPRYIFTMLEKVTRTIFHPDDDALLNYLNDDGLSIEPEYYMPVIPMTLVNGSDGIGTGWSSSV 311          
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S1Z3I8_9STRA (DNA topoisomerase 2 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3I8_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.480e-60
Identity = 98/121 (80.99%), Postives = 109/121 (90.08%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            VAQLAGY+ EHSAYHHGEASL GTIV MAQ + GSNN+NLLTPSGQFGTR MGGKDAASPRYIFT L+K  R +FHPDDDALLTYL DDGLSIEPEFY+PV+P++LVNG++GIGTGWSS V
Sbjct:  831 VAQLAGYIGEHSAYHHGEASLTGTIVNMAQSFVGSNNVNLLTPSGQFGTRRMGGKDAASPRYIFTKLEKITRTIFHPDDDALLTYLHDDGLSIEPEFYMPVIPMVLVNGSEGIGTGWSSNV 951          
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A482UEJ1_9ARCH (TOP4c domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UEJ1_9ARCH)

HSP 1 Score: 197 bits (501), Expect = 4.560e-60
Identity = 93/121 (76.86%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            VAQLAGYVSEH+AYHHGEASL  T+VGMAQ++ GSNN+NLL PSGQFGTRLMGGKDAAS RYIFT L    RA+F P+DDALL YLDDDG SIEPE YVP++PL+LVNG +GIGTGWS+ V
Sbjct:  107 VAQLAGYVSEHAAYHHGEASLGATVVGMAQNFVGSNNINLLVPSGQFGTRLMGGKDAASARYIFTRLTPITRAIFRPEDDALLKYLDDDGQSIEPEHYVPIIPLVLVNGAEGIGTGWSTSV 227          
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Match: A0A7S3XNX1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNX1_HETAK)

HSP 1 Score: 205 bits (522), Expect = 4.930e-60
Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 1
Query:    1 VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVPVLPLILVNGTDGIGTGWSSQV 363
            VAQLAGYVSEH+AYHHGEASLN TIVGMAQ++ GSNN+NLL PSGQFGTRLMGGKDAASPRYIFT L+  AR +FHPDDD LL +LDDDG SIEP+ Y+PVLP++LVNG DGIGTGWSS V
Sbjct:  264 VAQLAGYVSEHAAYHHGEASLNSTIVGMAQNFVGSNNVNLLFPSGQFGTRLMGGKDAASPRYIFTRLEAVARLIFHPDDDPLLNFLDDDGQSIEPDHYLPVLPMVLVNGADGIGTGWSSSV 384          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12980.1809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFS2_9PHAE9.470e-6790.08DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S3XY17_HETAK1.450e-6280.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4BNY5_CHRCT6.480e-6278.51Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A8J9T3Z1_PHATR1.940e-6175.21Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A7S0ITE3_9EUKA2.750e-6178.51Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7R9ZGL7_9STRA3.070e-6182.64Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2XMN6_9STRA6.060e-6180.17Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1Z3I8_9STRA1.480e-6080.99DNA topoisomerase 2 n=1 Tax=Ditylum brightwellii T... [more]
A0A482UEJ1_9ARCH4.560e-6076.86TOP4c domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S3XNX1_HETAK4.930e-6080.17Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12980contigS-dermatodea_contig12980:813..2112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.9
Seed ortholog evalue1.6e-58
Seed eggNOG ortholog2880.D7G0Y6
Preferred nameTOP2
KEGG koko:K03164
KEGG Pathwayko01524,map01524
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
EggNOG OGsCOG0187@1,KOG0355@2759
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.9702067-CDS-S-dermatodea_contig12980:812..10191622924269.9702067-CDS-S-dermatodea_contig12980:812..1019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12980 813..1019 -
1694079139.5160217-CDS-S-dermatodea_contig12980:812..10191694079139.5160217-CDS-S-dermatodea_contig12980:812..1019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12980 813..1019 -
1622924269.9789958-CDS-S-dermatodea_contig12980:1947..21121622924269.9789958-CDS-S-dermatodea_contig12980:1947..2112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12980 1948..2112 -
1694079139.5280976-CDS-S-dermatodea_contig12980:1947..21121694079139.5280976-CDS-S-dermatodea_contig12980:1947..2112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12980 1948..2112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12980.1809.1prot_S-dermatodea_contig12980.1809.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12980 813..2112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12980.1809.1

>prot_S-dermatodea_contig12980.1809.1 ID=prot_S-dermatodea_contig12980.1809.1|Name=mRNA_S-dermatodea_contig12980.1809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
VAQLAGYVSEHSAYHHGEASLNGTIVGMAQDYTGSNNLNLLTPSGQFGTR
LMGGKDAASPRYIFTALQKAARAVFHPDDDALLTYLDDDGLSIEPEFYVP
VLPLILVNGTDGIGTGWSSQVCA*
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mRNA from alignment at S-dermatodea_contig12980:813..2112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12980.1809.1 ID=mRNA_S-dermatodea_contig12980.1809.1|Name=mRNA_S-dermatodea_contig12980.1809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1300bp|location=Sequence derived from alignment at S-dermatodea_contig12980:813..2112- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGCGCAGCTGGCGGGGTACGTCTCGGAGCACTCGGCTTACCACCACGG CGAGGCATCCCTTAACGGGACGATCGTAGGCATGGCGCAGGACTACACCG GAAGCAACAACCTCAACCTCTTGACCCCTTCGGGACAGTTCGGCACTCGC CTTATGGGTGGCAAGGTACGAAGGGGGGGGGAGAGCGCAGGGTTTTTGTG TTTTTTTTTCCTGTTTTTGTTTTTTTTTCATTTCTGACATGGAGGAGGAC AAGTGGTATATATGGCCAAGGTACACTATTTACGGTCTACTGACCTGTGC ACGTCTTTAATTGCTTTTTTATTTGGAATTTACGTGTTTCCGTTTGGGTT TTCCCCTGGGTTCGGCGGCCTTGTACAAGTTGCCACGGCCGGTTTATGAT TTGTTTCTCCATCAGCCAACACGATCACAGATGCACAGTCAGATATGAAT CAAAGCAAATTGATTCACACTCGTTTCTCACAACTTTAACCCCACCCCTA CCTCCGTTCGGCGTCAGGAATGTAAACACCATATCCCTCCGACCCCGAAA AAATCTGTCATTTTTTTTTATTTCACGATATATATATACAAGTATAGGGT GTGTCTGTAAGTTTTTTTCGATTTCGCTTGTTTTCGCCCGACCACGAGAC AGCGGGAGATGCAACCAATGGATGCAACCATCACTATTATGGTGGGCCCG TTGGTTGATTCGGTTGATTCGATTGTAAGCGCGATATCCAATCGAATCAA CCAACGACAAAAACAACCAAGCTCACCCTTAACCTACAAGCCCCACCTCA ACAGCACTCCCTTCACAAACACATGTGCAAGCCTCTTAAACCCGAACGTA CGTTTGTGACAATTCGTTGGTATTCGCGATTAATAGGTACTTCCGTCATT TTTTTCCATTTCCCATTTTGTCATCCGACCAAGCGCGAGTGGGATCGGCG ACCGTTCGTGGGCCGGTCGTTTGTAAGTCCGACCATGAATAAAATCAACC GATCTGTAATTATCAACTGCTCACCCTTGACCGTTAACCTCAATGCCACG CTCTACTTGTACACAAACACATCTTATTACTTGGGTCCCCTAGGACGCGG CTAGCCCTCGATACATCTTCACGGCCCTGCAGAAGGCCGCGCGCGCCGTG TTCCACCCGGACGATGATGCCCTCCTTACCTACCTCGACGACGACGGGCT GTCCATCGAGCCCGAGTTCTATGTGCCGGTGTTGCCGCTTATCCTCGTTA ACGGGACGGACGGGATCGGCACGGGTTGGAGCAGCCAGGTATGCGCGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12980:813..2112-

>mRNA_S-dermatodea_contig12980.1809.1 ID=mRNA_S-dermatodea_contig12980.1809.1|Name=mRNA_S-dermatodea_contig12980.1809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig12980:813..2112- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGCGCAGCTGGCGGGGTACGTCTCGGAGCACTCGGCTTACCACCACGG
CGAGGCATCCCTTAACGGGACGATCGTAGGCATGGCGCAGGACTACACCG
GAAGCAACAACCTCAACCTCTTGACCCCTTCGGGACAGTTCGGCACTCGC
CTTATGGGTGGCAAGGTGGCGCAGCTGGCGGGGTACGTCTCGGAGCACTC
GGCTTACCACCACGGCGAGGCATCCCTTAACGGGACGATCGTAGGCATGG
CGCAGGACTACACCGGAAGCAACAACCTCAACCTCTTGACCCCTTCGGGA
CAGTTCGGCACTCGCCTTATGGGTGGCAAGGACGCGGCTAGCCCTCGATA
CATCTTCACGGCCCTGCAGAAGGCCGCGCGCGCCGTGTTCCACCCGGACG
ATGATGCCCTCCTTACCTACCTCGACGACGACGGGCTGTCCATCGAGCCC
GAGTTCTATGTGCCGGTGTTGCCGCTTATCCTCGTTAACGGGACGGACGG
GATCGGCACGGGTTGGAGCAGCCAGGTATGCGCGTAGGACGCGGCTAGCC
CTCGATACATCTTCACGGCCCTGCAGAAGGCCGCGCGCGCCGTGTTCCAC
CCGGACGATGATGCCCTCCTTACCTACCTCGACGACGACGGGCTGTCCAT
CGAGCCCGAGTTCTATGTGCCGGTGTTGCCGCTTATCCTCGTTAACGGGA
CGGACGGGATCGGCACGGGTTGGAGCAGCCAGGTATGCGCGTAG
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