mRNA_S-dermatodea_contig1298.1806.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1298.1806.1
Unique NamemRNA_S-dermatodea_contig1298.1806.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: A0A6H5JMW3_9PHAE (GTP_cyclohydro2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMW3_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 3.880e-102
Identity = 186/314 (59.24%), Postives = 222/314 (70.70%), Query Frame = 1 
Query:  358 AVRMFGGVIIGTAAEELSRKWRNPPQGASGSGDACSCGDDSGNESDRGEPLVASFSLPRPPPLRRGGEASFKEVQSGGNEDEAACTRRETGGGSMPSKRPGGLNKRKLGELACSPRGGSFVSECALPTEKGLFRLRAYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGHLINNL 1299
            ++ +FGGV +G AAE     W    Q   G G   SC +DS   + RG+   A  ++ R    +R G  +  +      E +AA   +  G G                   C+    +FVSEC+LPTEKG FRLRAYRY   +K+HEPVVMVAG++RGR +V VRVHDQCQTSEV GSKRCDCREQLD+SLRYIQ++GGG VIYLAQEGRGIGLANKVAAYALQD GLDTV+ANR+LGF+DDERSYECV+FIL DM IKS+QL+TNNP KI  LRA GVKV+GRIPI+VPAN+HNH YLEAKA+RM HLIN+L
Sbjct:   42 SLHLFGGVFVGKAAEAY---WTAILQLRRGDG---SCFEDSQTGAARGDARRADGAI-RGLKRKRAGAMASSDATPRAPEGQAAAQAKAAGQG-------------------CT----TFVSECSLPTEKGNFRLRAYRYADGVKTHEPVVMVAGNVRGRENVPVRVHDQCQTSEVLGSKRCDCREQLDMSLRYIQEHGGGVVIYLAQEGRGIGLANKVAAYALQDDGLDTVEANRQLGFEDDERSYECVEFILGDMDIKSVQLITNNPFKIGWLRAMGVKVEGRIPIEVPANEHNHGYLEAKASRMSHLINSL 325
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: A0A836CJG3_9STRA (GTP cyclohydrolase II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG3_9STRA)

HSP 1 Score: 286 bits (731), Expect = 3.310e-85
Identity = 144/196 (73.47%), Postives = 164/196 (83.67%), Query Frame = 1 
Query:  712 SFVSECALPTEKGLFRLRAYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGHLINNL 1299
            SFVSECALPT KGLFRLRAYR+Q   K HEPVVMVAG+ +G   V VRVHDQCQTSEV GS+RCDCREQLD SL++IQ +GG AVIYL QEGRGIGLANKVAAYALQDGGLDTVDANR LGF DDERSYECV FIL+DMG+ S++LMTNNP K++ LR  GV V G IPI +P N+HN  Y+++K  RMGHLI++L
Sbjct:   73 SFVSECALPTSKGLFRLRAYRHQGR-KRHEPVVMVAGEAKGEG-VHVRVHDQCQTSEVLGSQRCDCREQLDASLKHIQAHGG-AVIYLQQEGRGIGLANKVAAYALQDGGLDTVDANRALGFGDDERSYECVPFILEDMGVSSVKLMTNNPFKVDSLRELGVNVLGNIPIVIPTNEHNAKYIQSKVQRMGHLIDSL 265
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: A0A835ZEW2_9STRA (GTP cyclohydrolase II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW2_9STRA)

HSP 1 Score: 276 bits (706), Expect = 1.580e-81
Identity = 142/225 (63.11%), Postives = 170/225 (75.56%), Query Frame = 1 
Query:  646 SKRPGGLNKRKL-------GELACSPRGGSFVSECALPTEKGLFRLRAYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGHLINNL 1299
            S+ P    KRKL          AC     +FVS C+LPT+KG F LRAYR+    +SHEPVVMVAG+ +G   V VRVHDQCQTSEV GS+RCDC+EQLD +LR+IQ++GG AVIYL QEGRGIGLANKVAAYALQDGGLDTVDANR LGF DDERSYECV +IL+DMG+KS++LMTNNP K+  LRA GV+V   +P+ VP ++ N  Y+ +K  RMGHLI+ L
Sbjct:   52 SQAPRLTRKRKLPLAQSATAAAACGACATTFVSACSLPTDKGAFTLRAYRHIGPKRSHEPVVMVAGEAKGEG-VFVRVHDQCQTSEVLGSRRCDCKEQLDAALRHIQEHGG-AVIYLQQEGRGIGLANKVAAYALQDGGLDTVDANRHLGFADDERSYECVPYILEDMGVKSVRLMTNNPFKVASLRALGVRVLDSVPVVVPTHEDNERYMRSKVERMGHLIDGL 274
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: L1IM83_GUITC (GTP_cyclohydro2 domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IM83_GUITC)

HSP 1 Score: 254 bits (649), Expect = 1.180e-74
Identity = 126/192 (65.62%), Postives = 151/192 (78.65%), Query Frame = 1 
Query:  715 FVSECALPTEKGLFRLRAYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGHLI 1290
            F++EC +PT++G+FRLR+YRY+   K  EPVVMV+GDLRG+  V VRVHDQC TSEV GSKRCDC+EQLD++L YI QN G A+IY+ QEGRGIGLANK+AAY LQD GLDTVDANR LGF+DDERSY+CV  IL+DMGI S+QL+TNNP KI+ L   GVK+D   P  V  N +N  YL  KAARM H +
Sbjct:    5 FIAECHMPTDRGMFRLRSYRYRGA-KIMEPVVMVSGDLRGKEGVVVRVHDQCFTSEVLGSKRCDCKEQLDMALNYINQNSG-AIIYMPQEGRGIGLANKIAAYQLQDNGLDTVDANRHLGFEDDERSYDCVPAILEDMGILSVQLVTNNPYKIQQLTDVGVKIDRTKPSLVEPNTYNVKYLRTKAARMSHSL 194
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BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: A0A835ZPV4_9STRA (GTP cyclohydrolase II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPV4_9STRA)

HSP 1 Score: 261 bits (668), Expect = 2.410e-73
Identity = 130/203 (64.04%), Postives = 156/203 (76.85%), Query Frame = 1 
Query:  682 GELACSPRGGSFVSECALPTEKGLFRLRAYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGHLI 1290
            GE  C  R   FVSEC LPT KG FRLRAY Y+   K  EP+ +V+GD+     V VRVHDQC TSEV GS RCDCREQL+LSL YI ++GG  VIY+ QEGRGIGLANK+AAY+LQD GLDTVDANR LGF+DD RSYE V+FIL+D+G+KS+QLMTNNP K++CL+A G+KV  RIP+ V  N H+  YL+AK+ RM HL+
Sbjct:   12 GESDCFTR---FVSECKLPTRKGTFRLRAYSYEGPTKGLEPLAIVSGDIGDGVDVPVRVHDQCVTSEVLGSMRCDCREQLELSLDYIHRHGG-IVIYMQQEGRGIGLANKIAAYSLQDQGLDTVDANRHLGFEDDYRSYEAVEFILRDLGVKSVQLMTNNPFKLKCLKAMGIKVQARIPMLVAPNPHSERYLQAKSRRMSHLL 210
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: A0A6H5KNR9_9PHAE (GTP cyclohydrolase II n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNR9_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 1.360e-72
Identity = 132/195 (67.69%), Postives = 157/195 (80.51%), Query Frame = 1 
Query:  715 FVSECALPTEKGLFRLRAYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGHLINNL 1299
            +VSEC LPT +G FRLR+YR++   +S EPVVMVAGDL+    V VRVHDQC TSEV GS RCDC+EQL+L+L YI ++GG  VIY+ QEGRGIGLANKVAAYALQDGGLDTVDANR LGF DD RSYE V+ IL DMGIKSI+LMTNNP K++CL++ G+KV  RIP+ VP N H+ AYL AKA RM H+++ L
Sbjct:  183 YVSECLLPTPRGKFRLRSYRHEGHGRSMEPVVMVAGDLQDLEGVPVRVHDQCLTSEVLGSLRCDCKEQLELALDYISEHGG-CVIYMQQEGRGIGLANKVAAYALQDGGLDTVDANRHLGFDDDLRSYEAVEHILADMGIKSIKLMTNNPFKLKCLKSMGIKVLSRIPMLVPPNVHSLAYLRAKAHRMSHVLHQL 376
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BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: A0A7S2UW32_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW32_9STRA)

HSP 1 Score: 244 bits (622), Expect = 9.660e-69
Identity = 124/194 (63.92%), Postives = 150/194 (77.32%), Query Frame = 1 
Query:  718 VSECALPTEKGLFRLRAYRYQTELKSH--EPVVMVAGDLRG---RSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGH 1284
            V EC+LPT+KGLFRLR+YR++  L++   EPVV++AGDL+       V VRVHDQC TSEV GS+RCDC+EQLDL+L +IQ++GG A+IYL QEGRGIGLANKVAAY LQDGGLDTVDANR LGF DD+RSYECV FIL+D+GI SI LMTNNP+K++ L   GV+V    P+  P N HN  YL  K  +M H
Sbjct:   71 VGECSLPTKKGLFRLRSYRHRGPLEAGHLEPVVVIAGDLQEIYQGKDVAVRVHDQCLTSEVLGSQRCDCKEQLDLALDHIQRHGG-ALIYLQQEGRGIGLANKVAAYELQDGGLDTVDANRHLGFADDQRSYECVPFILRDLGISSISLMTNNPMKVKSLTRLGVEVTSTTPVLAPPNKHNLQYLRTKVEKMDH 263
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: A0A2D4BRM1_PYTIN (GTP cyclohydrolase II n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRM1_PYTIN)

HSP 1 Score: 240 bits (612), Expect = 4.930e-68
Identity = 117/192 (60.94%), Postives = 147/192 (76.56%), Query Frame = 1 
Query:  715 FVSECALPTEKGLFRLRAYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGHLI 1290
            F++E  LPT  G FR+RAYR    L+  EP+ +V+GD+ G+S V VRVHDQC TSEVFGS +CDCREQLD +  YI+QNGG  VIY+ QEGRGIGLANK+ AY++Q+ GLDTVDANR LGFKDD RSYE V  IL+D+GIKSI+L+TNNP KI  L    ++V+GR+P+ +   +H+  YLEAKA RM HL+
Sbjct:   53 FIAETNLPTADGFFRVRAYRSTGSLREAEPIAIVSGDVSGKSGVPVRVHDQCFTSEVFGSLKCDCREQLDFAKDYIRQNGG-VVIYMPQEGRGIGLANKIHAYSMQEKGLDTVDANRVLGFKDDYRSYEPVPAILQDLGIKSIRLLTNNPRKIRLLNQLSIQVEGRLPVIIQGGEHSQGYLEAKAQRMAHLL 243
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: H3GIE5_PHYRM (GTP_cyclohydro2 domain-containing protein n=18 Tax=Phytophthora TaxID=4783 RepID=H3GIE5_PHYRM)

HSP 1 Score: 238 bits (607), Expect = 1.470e-67
Identity = 116/193 (60.10%), Postives = 148/193 (76.68%), Query Frame = 1 
Query:  712 SFVSECALPTEKGLFRLRAYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGHLI 1290
            +FV+E ALPT+ GLFR+RAYR    L+  EP+ M+ GDLR + +V VRVHDQC TSEVFGS +CDCREQLD +  Y +Q+GG  VIY+ QEGRGIGLANK+ AY++Q+ GLDTVDANR LGFKDD RSYE V  ILKD+G++SI+L+TNNP KI  L   G+ V+GR+P+ +   +++  YL AKA RM HL+
Sbjct:   39 TFVAETALPTDGGLFRVRAYRSTGSLRECEPIAMITGDLRDKRNVPVRVHDQCFTSEVFGSLKCDCREQLDYAKAYTKQHGG-VVIYMPQEGRGIGLANKIMAYSMQERGLDTVDANRVLGFKDDYRSYEPVPAILKDLGVQSIRLLTNNPRKIRLLSQLGITVEGRLPVVIKGGEYSQGYLTAKAKRMSHLL 230
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Match: A0A662WVF5_9STRA (GTP_cyclohydro2 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVF5_9STRA)

HSP 1 Score: 244 bits (622), Expect = 2.400e-67
Identity = 119/193 (61.66%), Postives = 148/193 (76.68%), Query Frame = 1 
Query:  712 SFVSECALPTEKGLFRLRAYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCREQLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANRRLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRIPIQVPANDHNHAYLEAKAARMGHLI 1290
            +FV+E ALPT  G FR+RAYR    L+  EP+ M++GD+RG+  V VRVHDQC TSEVFGS +CDCREQLD +  Y +Q+GG  VIY+ QEGRGIGLANK+ AY++Q+ GLDTVDANR LGFKDD RSYE V  ILKD+GIKSI+L+TNNP KI  L   G+KV+GR+P+ +   +H+  YL AKA RM HL+
Sbjct:  213 TFVAETALPTAGGTFRVRAYRSVGSLRESEPIAMISGDVRGQRDVPVRVHDQCFTSEVFGSLKCDCREQLDFAKAYTKQHGG-VVIYMPQEGRGIGLANKIMAYSMQEQGLDTVDANRVLGFKDDYRSYEPVPAILKDLGIKSIRLLTNNPRKIRMLSQLGIKVEGRLPVVIKGGEHSQGYLTAKAVRMSHLL 404
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1298.1806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMW3_9PHAE3.880e-10259.24GTP_cyclohydro2 domain-containing protein n=2 Tax=... [more]
A0A836CJG3_9STRA3.310e-8573.47GTP cyclohydrolase II-domain-containing protein n=... [more]
A0A835ZEW2_9STRA1.580e-8163.11GTP cyclohydrolase II-domain-containing protein n=... [more]
L1IM83_GUITC1.180e-7465.63GTP_cyclohydro2 domain-containing protein (Fragmen... [more]
A0A835ZPV4_9STRA2.410e-7364.04GTP cyclohydrolase II n=1 Tax=Tribonema minus TaxI... [more]
A0A6H5KNR9_9PHAE1.360e-7267.69GTP cyclohydrolase II n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S2UW32_9STRA9.660e-6963.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BRM1_PYTIN4.930e-6860.94GTP cyclohydrolase II n=1 Tax=Pythium insidiosum T... [more]
H3GIE5_PHYRM1.470e-6760.10GTP_cyclohydro2 domain-containing protein n=18 Tax... [more]
A0A662WVF5_9STRA2.400e-6761.66GTP_cyclohydro2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1298contigS-dermatodea_contig1298:2112..7773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.0
Seed ortholog evalue2.9e-90
Seed eggNOG ortholog2880.D8LTI2
Preferred nameRIB1
KEGG rclassRC00293,RC02504
KEGG koko:K01497
KEGG ReactionR00425
KEGG Pathwayko00740,ko00790,ko01100,ko01110,ko02024,map00740,map00790,map01100,map01110,map02024
KEGG ModuleM00125
GOsGO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.3,4-dihydroxy-2-butanone-4-phosphate synthase activity
EggNOG OGsCOG0807@1,KOG1284@2759
EC3.5.4.25
COG Functional cat.H
BiGG ReactioniRC1080.CRv4_Au5_s9_g15352_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGTP cyclohydrolase II, RibA
Ec32 orthologEc-02_005710.1
Exons4
Model size3243
Cds size1137
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1298.1806.1prot_S-dermatodea_contig1298.1806.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1298 4053..7608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.7462454-UTR-S-dermatodea_contig1298:2111..40521622924269.7462454-UTR-S-dermatodea_contig1298:2111..4052Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 2112..4052 -
1694079139.3550053-UTR-S-dermatodea_contig1298:2111..40521694079139.3550053-UTR-S-dermatodea_contig1298:2111..4052Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 2112..4052 -
1622924269.7972333-UTR-S-dermatodea_contig1298:7608..77731622924269.7972333-UTR-S-dermatodea_contig1298:7608..7773Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 7609..7773 -
1694079139.420826-UTR-S-dermatodea_contig1298:7608..77731694079139.420826-UTR-S-dermatodea_contig1298:7608..7773Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 7609..7773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.7596695-CDS-S-dermatodea_contig1298:4052..42171622924269.7596695-CDS-S-dermatodea_contig1298:4052..4217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 4053..4217 -
1694079139.3718624-CDS-S-dermatodea_contig1298:4052..42171694079139.3718624-CDS-S-dermatodea_contig1298:4052..4217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 4053..4217 -
1622924269.7675602-CDS-S-dermatodea_contig1298:4774..48791622924269.7675602-CDS-S-dermatodea_contig1298:4774..4879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 4775..4879 -
1694079139.3888087-CDS-S-dermatodea_contig1298:4774..48791694079139.3888087-CDS-S-dermatodea_contig1298:4774..4879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 4775..4879 -
1622924269.7761216-CDS-S-dermatodea_contig1298:5367..55171622924269.7761216-CDS-S-dermatodea_contig1298:5367..5517Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 5368..5517 -
1694079139.4002054-CDS-S-dermatodea_contig1298:5367..55171694079139.4002054-CDS-S-dermatodea_contig1298:5367..5517Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 5368..5517 -
1622924269.7861407-CDS-S-dermatodea_contig1298:6891..76081622924269.7861407-CDS-S-dermatodea_contig1298:6891..7608Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 6892..7608 -
1694079139.4112349-CDS-S-dermatodea_contig1298:6891..76081694079139.4112349-CDS-S-dermatodea_contig1298:6891..7608Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 6892..7608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1298.1806.1

>prot_S-dermatodea_contig1298.1806.1 ID=prot_S-dermatodea_contig1298.1806.1|Name=mRNA_S-dermatodea_contig1298.1806.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=379bp
MILDHPTVASEQLRALNELLPGTDSLTSAAHHGHLHNSCDSSSSDSDTGT
GHRVLGSETLGLVQAVRMFGGVIIGTAAEELSRKWRNPPQGASGSGDACS
CGDDSGNESDRGEPLVASFSLPRPPPLRRGGEASFKEVQSGGNEDEAACT
RRETGGGSMPSKRPGGLNKRKLGELACSPRGGSFVSECALPTEKGLFRLR
AYRYQTELKSHEPVVMVAGDLRGRSSVTVRVHDQCQTSEVFGSKRCDCRE
QLDLSLRYIQQNGGGAVIYLAQEGRGIGLANKVAAYALQDGGLDTVDANR
RLGFKDDERSYECVDFILKDMGIKSIQLMTNNPLKIECLRAAGVKVDGRI
PIQVPANDHNHAYLEAKAARMGHLINNL*
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mRNA from alignment at S-dermatodea_contig1298:2112..7773-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1298.1806.1 ID=mRNA_S-dermatodea_contig1298.1806.1|Name=mRNA_S-dermatodea_contig1298.1806.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5662bp|location=Sequence derived from alignment at S-dermatodea_contig1298:2112..7773- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTAAATTCCCCACCGCCACAAGCAAAGGTTATCTCTTCCAAGGATACGGC
ATCTCACATAGCATCACAGCTCCACAGCTCCTACCACAACAAACACCTAC
CCTACGACGAGCCGAGACAACCACCCACTCCCGAGAGACAGCAGGATAGA
AGACAGCAAGCAGTCATGATCCTGGATCACCCCACGGTGGCGAGCGAGCA
GCTCCGCGCGCTGAACGAGTTGCTGCCTGGGACTGATTCCCTTACGAGTG
CTGCTCACCACGGCCATCTCCATAACTCGTGCGACAGCAGCAGCAGCGAC
AGCGACACGGGCACCGGGCACCGGGTTCTCGGCAGTGAAACGCTGGGGCT
CGTCCAGGCCGTCCGAATGTTCGGCGGCGTGATCATCGGCACGGCCGCTG
AGGAGCTCTCGCGTAAGTGGCGTAATCCCCCCCAGGGAGCAAGCGGCTCT
GGAGATGCCTGCTCGTGCGGCGATGACTCCGGAAACGAGAGCGACCGCGG
CGAGCCTTTGGTGGCGTCGTTCAGCCTCCCGCGCCCCCCCCCCCTGCGTC
GTGGAGGCGAAGCCTCCTTCAAAGAGGTCCAGAGCGGTGGCAACGAGGAT
GAGGCCGCGTGCACGAGAAGGGAGACAGGCGGCGGGTCAATGCCTTCGAA
ACGGCCCGGCGGATTGAACAAGAGGAAGCTCGGGGAGCTTGCCTGCAGTC
CTCGGGGTGGCTCCTTCGTTTCTGAGTGCGCACTGCCTACAGAGAAGGGG
CTCTTTCGGCTGCGAGCATACCGTTACCAGACCGAGCTCAAGTCGCACGA
GCCCGTCGTGATGGTCGCGGGCGATCTACGGGGCCGCTCGAGCGTGACGG
TGCGGGTGCACGACCAGTGCCAAACCTCGGAGGTGAGGCCATGGGACATG
GGGGATGCGTGCCACGTTTTTTGTATCCATACTGTTATTTGTAACGATCG
TACGTAGCGTACGGTGTGCCCCTTCGACGAAACCGTTGTACGGCTCCGGC
TCTAGTAGGCTGGCTTGTTGGGCGTTGGGCGTGGCCAAGGACGTTGGGAT
AACATTGAGGGGTTCGGCCGCCGCATCGTGTGGGTGTGCGAGGCGTAAAA
ATCATTCTGATTCGTCCATCTGTAGCCAGTCGCGGCTGAATCGGGCAATC
GGTATAGGCTAGCGAAGGGGTGGGGGGGCGGGCGCTCTGCCCTTGTACAT
CTGCTGTACAAGTACAACTTTTACCTGAGGCTCCAAGGGGTCGTGCGTGC
CCCAGAAGTTGTTGAGGGTAGAGGATCGTGACATGCTAGCTGTACCTCGT
CTGGCATGTTCTCTTCATGCAGCCTTCATTCAAGCTTTTGCGAGCGCGGC
GATGGTCACGGGCACTGCTGCTGCATCATGCCCCCCCCCCCCCCCGCCCC
CGTCACTTCACTGACTTGAAGAACACACATCATATACGATACGCACTCGC
GGCTCGCGAGTAACCCACACCCGACGTCACTCTTCTGCTGTGGTGGTAAC
AGAAAAATATCGGCGCCACCTGTCTTGCTCCAAGACGGTGGAACTCACCG
CCTCAGAAGCTCTTCTGTTCCAACCACTCCCAACCACTCTCTTCTCTGAC
CATCTCCTTCGGTCTTCCGACTAAGGGGTTGCATTTCCCCGAAGATCCAT
TATATCCCCGCACAGCAGCGGTGTATGGACACACGGGAGGTTCCCTTTTC
CTTCCCTTTCCCTTATTTCTGCGCTCGGCGTTGCACCGGCTCGATGCGGG
CCTGCCGTCTCCCATCTGTTTTGCGAACCCTGCCTCGGACCAATTGCGGT
CCATTATCTAGCTTCGCTAATTCCGAGCACCGACCTCGCAGTTGCGCTTT
GTAGCCACTGGTCTCGGCTGTCCACGGTATCAGAAGTGAAAACAGTGATG
ACTCGGGGAAACCTATAGTACATACCTTGTGGTTATTTTATATGCAAATT
CTCAATAGTCGGGCCGTGATAACTACAAAGGTTACCGCCGGTTTGGTGCT
GTTTTTTTGCCTGGAGACCATGCCCACTGGCACGGGGTCTGATGATTATA
TGATAGCACATGTATATACCATCGGTCATCATCACTGGCGCGCTGCTGCT
GTGAAACGCAGCATCAGCAACAACAATAGATGCACGTAAATATGCATATA
GTTGCAGTTAACAGCAGTAGCGTTTTAGCATATCTCTATCATAGCACATT
TAGCGGCATATTCGCCCGCACTTATCGTCCTATGCAACACGACGCGTTCC
GTGCAGGTGTTCGGCTCGAAGCGTTGCGATTGCAGGGAGCAGCTGGACCT
GTCTCTGAGGTACATTCAGCAGAACGGGGGCGGCGCCGTCATTTATCTGG
CGCAGGAAGGGCGAGGGATCGGCCTGGCGAACAAGGTGGCGGCTTACGCT
CTCCAGGTACTTGTGAAGGGTGGCCGTTGGTTTTGCGCCCATTTGTAACC
ACAATCGTGTGCATGTGCATGTACAAGTAAATCTATGCCTACCAGAGTTA
CGCTACCGGAAAACACTTCACTGCCGGAGGTTCAAAGTTCAAAGTGCTGC
CTCGTCCTCGTCGCACCTAATGTTCAGCCGTCTCGGATCGTTCTCGGGCA
TGGCGGAGTTTAGTTTACTTCATGCGAAACAAGCAACAGATTACAGCCTC
AACACCAGGACAAAATGCCCCATCAACCATGGCCGGCGTTGGATCCTGTT
GACCAGACATGCTCGCTTTCTCGAGCTGTGCGCCAGATTCGCCGCACCAT
TCTGCCCACGTATCATACCGTACAGTGCTTGGAAAGTCCAAAGCCTGTTC
TGTGTTCCGCGCGACCGGAGTAGAATGTGCTCTCGATATGTTTCTTCTTC
GCATTAACTCACAAGCAGTTTGTTTTGCGACTGGGCGGCAACAGGACGGT
GGGCTGGACACTGTGGACGCAAATCGAAGGCTCGGGTTCAAGGACGATGA
GCGGTCCTACGAGTGTGTGGACTTCATCCTCAAAGACATGGGAATTAAGG
TAAACGTTCTTTTGTGCGGTTGCAACGTTGTTGACGCTGCTGACAGTTTC
ACCTCACCGTAATTTCGGGGATTTTGATGAAATGCCTCCACTAATAGAAG
CAACGGTGGGCTGCACTCGATAGCCGACTCCATTCGCGCGCCTGTTCAAT
ATACATATTGGTAGGTAGTTCGCTTACGACGAACTTACTTTTTCTCTGTT
GATGCGCAAAGACGTGCCCCACGCCATGGCCGTAAAATCATACCGCATTT
ATTGTGAAACGTTGAGCTTGCACGCTTAGGGGTGGGAAGAGAGCCGACGC
GCGTGGGCCAGCCTAGCAAATCATCTTCTGTCAACAGTAGCATTGCCCCG
TATTGACAGTTGTATAATAACAGACATTCAGCGTGTGCCCACGGCATCAG
CCACGTTCACCAACCCGCGTCGGTGAAGAACTCTCAAAGCACGCTTGTAC
CCCCGTGATTAGCGGGGGAGCCTTTCAACGAGCCTGGTCGTTCCGTCTTC
CCGCCCTTATCTGTTCGTGCAACTATGATGCCATACTGTCTGTTTTCTGT
CCGCAGAGCATCCAACTCATGACGAACAACCCGTTGAAGATTGAGTGCCT
GCGAGCTGCGGGGGTTAAGGTGGATGGACGCATTCCGATCCAGGTACCTG
CTAACGACCACAACCACGCGTACCTTGAGGCTAAGGCCGCTCGGATGGGA
CACTTGATCAACAACTTGTAGCTTCGTGATGAGCCCCAAAATTTCTTGGT
GTGCCCAGAATGCGGATATTGAGGATGTTTTCTGTCTTCGCGTTTTTCGG
CGTCGACGGCCTTAGTCGTCCCGACGGGGCTTCGGTTTGCCCGGTCCGCT
GCTAGGCCTGCTAAAGAGCGACGCCGTGTCATGCGCGGTTATTTTTTTCT
TTTGAGATTTCTTGGTGCCCACCGTGCGGATCGGCTGTTGAGGATGTTTC
CTGTTTTTTTCGGCGTCGGCGGCTTGTGTTTTGCCAACGGTGTCCTTTCA
CCAGTTTCGATGCCGTGTCTGGTGATCAACCCCGTGCTTTGTCGTGCGCA
GTTTCTGCTTTCTCGTGCCACCAGACTAAACTAGCACTCGTGTAGTGTTC
TATGTTTTTACATTTGATCGTACAGCACGAAACGTGCACGTACAAAGTTT
GCCTCGTCAGCCCGACCTCATTCCTGCATTAGTATTGCGGCTTCAGCCTC
TCAAGGCTTGGGCTCGATGACTGCGATGTATACCGTTAAGTCTAGTCACG
TATTTGATATTGTATATTCCACGTACGGTGTGTGACGTTTTTTTTTAGTG
GAAAAAGTGCGGACGTGTGGGCGACGTTTTTGCTCTGAATTTTACGCTTG
TCTCTCCGTTCGCACTGCAGCAGGTTATGTAGAGGTACAGTACAGGAGAG
GGGGTTCATCTTTGTGCTGTGTGTGAGCGAATGTGCTTTCCAGGGAGTTT
TATCGGTTTGGTTTCTTTGGAGGAAACGAGGCGTTTTATAGTGCGGGGTA
GCTGTTTTGTTCGAAACCCCTTTCGTTTATTGGGCGATTGAACCCAGCGT
CAAGCGGAGGCTAACTGGCGTTCGCTGTAAGCAGAGTAAAAGGTTGGTAT
GATACCTGGTAACCAACTCACCGTCAAAGCGAAGAGCGTATATGTATTGT
ACCCATAAGAGTAATAGTGGAGTTACACAAGGAACGTCTGGGTTAGGGTA
TAATATGTCATACAACGACCGATGCGTCCTGCACCATACAGCAGTACGCT
CCTGTTTATTAGTCAACCGTTGGATTTGAACCATATATGAGCTCGAGCGC
TCTCTTTAGTTCGTGGCATCCTGTGCGTCGGCGCGCTGCGGGAGTGCTGA
AACCAATGCGCGATCAAGATCGGATGCACCCACTAGGGAGATACGGGGTG
GTCCCTGGTGGCCACGGGCGGGATATGGTTTTGGCTGAAGGGTTAGAAGT
GAGATGGGCATTTCACGCTCGTAAGATATAGCCCCAGAATTGCTGAAGTC
GGCCGTATACTTGTATACGAGTTGCCCTAGGAACGCTATGGAGCAGCTTT
GTGTGGGGAACAAAATACGAACGACACAGGCGTTGATGGAGTTTACTCTG
GAGTATTTTGTTGCTGGAGCCCCTATAATTTGTTCTCGTGTGCCATTCGA
GGACGACCCGAAGCAATCTTCAAGCAGGGCGTTGTTTGAAATTCATGAAC
TACAATGAGTGAGCCCCGCCAGCCTTGGTCTATCGACCTGTGCACCACCG
CGGCTCCTGCCGTTGTTGAGCTGGGAATACCCCATGAAATTCGTAGATCC
TTATCAAGTACAGGAACAATGAACGTTGTTATACTATAATATAGTGATTT
ATAGTTGATTCTTCTGGACAAAACTAACTGCGTGTCAAGAGTTGAGGCGG
TGAAGCATCTGCGAAGCATCTGCGAAGCATCTGCGAAGCAAATATTGTGG
AGCTGGGATACTCCATGAAACCGCATATCCTTATTAATTTCAGGACACAT
GAACTTATTTCTACTCTGCTGTAGCGATTTAGAGTTGATTCTTCTGGACA
AAACTACATAACTGCGAGTTAGAGTTGAGGCGGTGAAGCATCTGAGATGC
AAACAGTTGGATTTTTCACCTCACGGGCGTAGCCTAATAATATTAATATT
AATATTAATAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1298:2112..7773-

>mRNA_S-dermatodea_contig1298.1806.1 ID=mRNA_S-dermatodea_contig1298.1806.1|Name=mRNA_S-dermatodea_contig1298.1806.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2274bp|location=Sequence derived from alignment at S-dermatodea_contig1298:2112..7773- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCCTGGATCACCCCACGGTGGCGAGCGAGCAGCTCCGCGCGCTGAA
CGAGTTGCTGCCTGGGACTGATTCCCTTACGAGTGCTGCTCACCACGGCC
ATCTCCATAACTCGTGCGACAGCAGCAGCAGCGACAGCGACACGGGCACC
GGGCACCGGGTTCTCGGCAGTGAAACGCTGGGGCTCGTCCAGGCCGTCCG
AATGTTCGGCGGCGTGATCATCGGCACGGCCGCTGAGGAGCTCTCGCGTA
AGTGGCGTAATCCCCCCCAGGGAGCAAGCGGCTCTGGAGATGCCTGCTCG
TGCGGCGATGACTCCGGAAACGAGAGCGACCGCGGCGAGCCTTTGGTGGC
GTCGTTCAGCCTCCCGCGCCCCCCCCCCCTGCGTCGTGGAGGCGAAGCCT
CCTTCAAAGAGGTCCAGAGCGGTGGCAACGAGGATGAGGCCGCGTGCACG
AGAAGGGAGACAGGCGGCGGGTCAATGCCTTCGAAACGGCCCGGCGGATT
GAACAAGAGGAAGCTCGGGGAGCTTGCCTGCAGTCCTCGGGGTGGCTCCT
TCGTTTCTGAGTGCGCACTGCCTACAGAGAAGGGGCTCTTTCGGCTGCGA
GCATACCGTTACCAGACCGAGCTCAAGTCGCACGAGCCCGTCGTGATGGT
CGCGGGCGATCTACGGGGCCGCTCGAGCGTGACGGTGCGGGTGCACGACC
AGTGCCAAACCTCGGAGATGATCCTGGATCACCCCACGGTGGCGAGCGAG
CAGCTCCGCGCGCTGAACGAGTTGCTGCCTGGGACTGATTCCCTTACGAG
TGCTGCTCACCACGGCCATCTCCATAACTCGTGCGACAGCAGCAGCAGCG
ACAGCGACACGGGCACCGGGCACCGGGTTCTCGGCAGTGAAACGCTGGGG
CTCGTCCAGGCCGTCCGAATGTTCGGCGGCGTGATCATCGGCACGGCCGC
TGAGGAGCTCTCGCGTAAGTGGCGTAATCCCCCCCAGGGAGCAAGCGGCT
CTGGAGATGCCTGCTCGTGCGGCGATGACTCCGGAAACGAGAGCGACCGC
GGCGAGCCTTTGGTGGCGTCGTTCAGCCTCCCGCGCCCCCCCCCCCTGCG
TCGTGGAGGCGAAGCCTCCTTCAAAGAGGTCCAGAGCGGTGGCAACGAGG
ATGAGGCCGCGTGCACGAGAAGGGAGACAGGCGGCGGGTCAATGCCTTCG
AAACGGCCCGGCGGATTGAACAAGAGGAAGCTCGGGGAGCTTGCCTGCAG
TCCTCGGGGTGGCTCCTTCGTTTCTGAGTGCGCACTGCCTACAGAGAAGG
GGCTCTTTCGGCTGCGAGCATACCGTTACCAGACCGAGCTCAAGTCGCAC
GAGCCCGTCGTGATGGTCGCGGGCGATCTACGGGGCCGCTCGAGCGTGAC
GGTGCGGGTGCACGACCAGTGCCAAACCTCGGAGGTGTTCGGCTCGAAGC
GTTGCGATTGCAGGGAGCAGCTGGACCTGTCTCTGAGGTACATTCAGCAG
AACGGGGGCGGCGCCGTCATTTATCTGGCGCAGGAAGGGCGAGGGATCGG
CCTGGCGAACAAGGTGGCGGCTTACGCTCTCCAGGTGTTCGGCTCGAAGC
GTTGCGATTGCAGGGAGCAGCTGGACCTGTCTCTGAGGTACATTCAGCAG
AACGGGGGCGGCGCCGTCATTTATCTGGCGCAGGAAGGGCGAGGGATCGG
CCTGGCGAACAAGGTGGCGGCTTACGCTCTCCAGGACGGTGGGCTGGACA
CTGTGGACGCAAATCGAAGGCTCGGGTTCAAGGACGATGAGCGGTCCTAC
GAGTGTGTGGACTTCATCCTCAAAGACATGGGAATTAAGGACGGTGGGCT
GGACACTGTGGACGCAAATCGAAGGCTCGGGTTCAAGGACGATGAGCGGT
CCTACGAGTGTGTGGACTTCATCCTCAAAGACATGGGAATTAAGAGCATC
CAACTCATGACGAACAACCCGTTGAAGATTGAGTGCCTGCGAGCTGCGGG
GGTTAAGGTGGATGGACGCATTCCGATCCAGGTACCTGCTAACGACCACA
ACCACGCGTACCTTGAGGCTAAGGCCGCTCGGATGGGACACTTGATCAAC
AACTTGTAGAGCATCCAACTCATGACGAACAACCCGTTGAAGATTGAGTG
CCTGCGAGCTGCGGGGGTTAAGGTGGATGGACGCATTCCGATCCAGGTAC
CTGCTAACGACCACAACCACGCGTACCTTGAGGCTAAGGCCGCTCGGATG
GGACACTTGATCAACAACTTGTAG
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