mRNA_S-dermatodea_contig1296.1797.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1296.1797.1
Unique NamemRNA_S-dermatodea_contig1296.1797.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1296.1797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1296contigS-dermatodea_contig1296:11527..12173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size647
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1296.1797.1prot_S-dermatodea_contig1296.1797.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1296 11566..11928 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924268.8541307-UTR-S-dermatodea_contig1296:11526..115651622924268.8541307-UTR-S-dermatodea_contig1296:11526..11565Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1296 11527..11565 +
1694079138.6521227-UTR-S-dermatodea_contig1296:11526..115651694079138.6521227-UTR-S-dermatodea_contig1296:11526..11565Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1296 11527..11565 +
1622924268.8753977-UTR-S-dermatodea_contig1296:11928..121731622924268.8753977-UTR-S-dermatodea_contig1296:11928..12173Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1296 11929..12173 +
1694079138.6727066-UTR-S-dermatodea_contig1296:11928..121731694079138.6727066-UTR-S-dermatodea_contig1296:11928..12173Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1296 11929..12173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924268.8654652-CDS-S-dermatodea_contig1296:11565..119281622924268.8654652-CDS-S-dermatodea_contig1296:11565..11928Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1296 11566..11928 +
1694079138.6621037-CDS-S-dermatodea_contig1296:11565..119281694079138.6621037-CDS-S-dermatodea_contig1296:11565..11928Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1296 11566..11928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1296.1797.1

>prot_S-dermatodea_contig1296.1797.1 ID=prot_S-dermatodea_contig1296.1797.1|Name=mRNA_S-dermatodea_contig1296.1797.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MGSQDLTLQSGPVTTAPHLAVRPGTFSCGKLKFCTRMLSSGPRRGHFRRS
RLNLCSTATCQSCFTRAKTLLKWVRSGSYMKKMPLILVVLFRHSRQKKHK
RPSRRRCPPLSQKYFVHVRR*
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mRNA from alignment at S-dermatodea_contig1296:11527..12173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1296.1797.1 ID=mRNA_S-dermatodea_contig1296.1797.1|Name=mRNA_S-dermatodea_contig1296.1797.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=647bp|location=Sequence derived from alignment at S-dermatodea_contig1296:11527..12173+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCTTCTACTGGCGAACTGAAATTCTGCACACTACCGATGGGTAGCCA
AGACTTGACTCTACAGTCTGGGCCGGTCACCACCGCGCCACACTTGGCCG
TTCGACCTGGCACATTTTCTTGTGGCAAACTAAAATTCTGCACTAGAATG
CTCTCAAGTGGACCAAGGAGAGGCCATTTCCGAAGGTCCCGTCTCAATCT
GTGCTCTACAGCGACCTGCCAAAGTTGTTTTACGAGAGCTAAAACACTAT
TAAAATGGGTACGGAGTGGGAGTTATATGAAGAAGATGCCTTTGATTCTC
GTTGTTCTTTTCCGTCATAGTCGGCAAAAAAAGCACAAGCGGCCGAGCAG
GCGAAGGTGCCCCCCTTTGTCGCAAAAGTACTTCGTACACGTTCGACGTT
GAGCCGTGAGACTAGCAGCCATCTTACTTCGCAAATGAAAACGTTCTCAA
ATCCAATCTTGCGCGCCTCTCATTCACCGCCAAACACGCGTGGCGTCCGG
ACTCCCTCCCTGCTGTCGTCTCAACGATAAACATCTTTAGATACAGTTCG
TTCACGACTCAGTGCACACTTTCAAAGCCCCCTACATTGCTATTCCGCTC
CATTAGTTATCGCCGGAACAGCTCCACGTGGCCGGAGGAGGTGTTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1296:11527..12173+

>mRNA_S-dermatodea_contig1296.1797.1 ID=mRNA_S-dermatodea_contig1296.1797.1|Name=mRNA_S-dermatodea_contig1296.1797.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig1296:11527..12173+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTAGCCAAGACTTGACTCTACAGTCTGGGCCGGTCACCACCGCGCC
ACACTTGGCCGTTCGACCTGGCACATTTTCTTGTGGCAAACTAAAATTCT
GCACTAGAATGCTCTCAAGTGGACCAAGGAGAGGCCATTTCCGAAGGTCC
CGTCTCAATCTGTGCTCTACAGCGACCTGCCAAAGTTGTTTTACGAGAGC
TAAAACACTATTAAAATGGGTACGGAGTGGGAGTTATATGAAGAAGATGC
CTTTGATTCTCGTTGTTCTTTTCCGTCATAGTCGGCAAAAAAAGCACAAG
CGGCCGAGCAGGCGAAGGTGCCCCCCTTTGTCGCAAAAGTACTTCGTACA
CGTTCGACGTTGAATGGGTAGCCAAGACTTGACTCTACAGTCTGGGCCGG
TCACCACCGCGCCACACTTGGCCGTTCGACCTGGCACATTTTCTTGTGGC
AAACTAAAATTCTGCACTAGAATGCTCTCAAGTGGACCAAGGAGAGGCCA
TTTCCGAAGGTCCCGTCTCAATCTGTGCTCTACAGCGACCTGCCAAAGTT
GTTTTACGAGAGCTAAAACACTATTAAAATGGGTACGGAGTGGGAGTTAT
ATGAAGAAGATGCCTTTGATTCTCGTTGTTCTTTTCCGTCATAGTCGGCA
AAAAAAGCACAAGCGGCCGAGCAGGCGAAGGTGCCCCCCTTTGTCGCAAA
AGTACTTCGTACACGTTCGACGTTGA
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