mRNA_S-dermatodea_contig12959.1795.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: D7FI48_ECTSI (Nascent polypeptide associated complex alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI48_ECTSI) HSP 1 Score: 224 bits (570), Expect = 9.940e-60 Identity = 264/720 (36.67%), Postives = 326/720 (45.28%), Query Frame = 1
Query: 1 GNMLLDEKEADAEAHEGEKEALWRRIQDMARRVVELEQELAEARS-FANTDNNYFRNPS-------------------PCPETPRPGERVLRAKNEMLERQLAHLKDQEEETQLELAAAKKARFFRLSSCRSRAPGSSAAHRGPSFDGIGNLDTFSPAAASVSPACAPTGRTLVNAGNGMPTPRSPGGSMRLSTASRGSCWAHLMESPRVSAAGPDGEGEXXXYXXXGVGSEASEEALRNADRIHASSWSEGAEELDQEGEDGEETDDGIGVND-YDTVWLMEQNAWLMEEMESKDELIEALRQQVEXXXXXXXXXXXXXXXXXXXSHQALRELAEGKGSDDDADGQDENESATFGTRERSFMDDLLDESGDSS------------PANPVSFPSKETPYGDGFS--LGEADDAATTVGGEPDVPEGRVRVWYFLAD--ILAAVPKHKSSFGGVLAENALQPATGFNEGPENTLGNAAGKRAQNKSPAREDRENSPLRAPRTSVSPLRRRSVDQANGPSPVVAARREAGGVTGVVGQHTANTAHETVVKAVPEPAVVDAAAAMGEIAPLADSSTPATNDDQPTLEEEALPPVLAAAVSVPEVVSVRAAKRAAIQGAKEEMEAKAXXXXXXXXXXXXX----------PATTYSRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTSETDCSGSEVHA 2019
G MLLDEKEA AEAHEGEKEALWRRIQDMARRV+ELEQE AE+R F+ + + R + R ER LRAKNEMLERQLAH++++ EETQLELAAA+K+ LS+ R GS G F G SPA +S SP+ P V S G D EG SE + LR ADR+HAS+ EE + + ++D D WL+EQN WLM+E+E+KD+ I+ALR+Q+E S Q+LREL G DD+D E +RSF+D LL +G P NP S P+ +G + DDA G V A + AA P+ + SFGGVLA NA+Q A K AQN S RR+S+ + AGGVTG+VG + AM + PL P + A ++P V K Q A +++AK XXXXXXXXXXXXX P +RAERKSRQA++KLGLR VKGVFRMTMRT+NGVVFVVK PDVF+HP+Q TYVVFG++ETD SGSEV A
Sbjct: 44 GKMLLDEKEAAAEAHEGEKEALWRRIQDMARRVMELEQEAAESRDEFSLQQDEHARRLALAGAQRGXXXXXXXXXXXXXXXXXDRAEERALRAKNEMLERQLAHMREEAEETQLELAAARKSSPA-LSARLERGDGSL---NGGGF-GAAPPRPLSPAGSSFSPSRLPEVVAAV----------SGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAEGGE---------SEVWNDELRAADRVHASALRARIEEAGESDDXXXXXXXXXXIDDEQDVAWLLEQNTWLMQELEAKDDFIQALREQMEQLQRGGGHGPGPSS-----SMQSLREL----GGSDDSDXXXXQEGG-----QRSFLDHLLHGTGGGGSNGQRPVDGHHEPTNP-SVPTTVVSRNEGRPRVVTTNDDAPAAPGLRDGCAAAGVGQATAAAPAALEAAAPRGRRSFGGVLAGNAMQDAD---------------KTAQN------------------SARSSRRQSM-------------QSAGGVTGIVG-YAXXXXXXXXXXXXXXXXXXXXVGAMATVPPL-----PEAEETTXXXXXXXXXXXXXXAATLP-TVEAETTKATGRQKAMAKVKAKQXXXXXXXXXXXXXXEPAAQEAVPPLAHMNRAERKSRQAVEKLGLRAVKGVFRMTMRTTNGVVFVVKAPDVFRHPRQETYVVFGSAETDGSGSEVRA 671
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: A0A6H5J6R4_9PHAE (NAC-A/B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R4_9PHAE) HSP 1 Score: 138 bits (348), Expect = 2.590e-30 Identity = 237/781 (30.35%), Postives = 310/781 (39.69%), Query Frame = 1
Query: 85 MARRVVELEQELAEARSFANTDN--------------------NYFRNPSPCPETPRPGERVLRAKNEMLERQLAHLKDQEEETQLELAAAKKARFFRLSSCRSRAPGSSAAHRGPSFD-----GIGNLD----------TFSPAAASVSPACAPTGRTLVNAGNGMPTPRSPGGSMRLSTASRGSCWAH-------------------------------LMESPRVSAAGPDGEGEXXXYXXX--------------------GVGSEASEEALRNADRIHASSWSEGAEELDQEGEDGEETDDGIGVNDY-----------DTVWLMEQNAWLMEEMESKDELIEALRQQVEXXXXXXXXXXXXXXXXXXXSHQALRELAEGKGSDDDADGQDENESATFGTRERSFMDDLLDESGDSS------------PANPV----------SFPSKETPYGDGFSL--GEADDAATTVGGEPDVPEGRVRVWYFLADILAAVP--KHKSSFGGVLAENALQP-ATGFNEGPENTLGNAAGKRAQNKSPAREDRENS-PLRAPRTSVSPLRRRSVDQANGPSPVVAARRE-AGGVTGVVGQ---HTANTAHETVVKAVPEPAVVDAAAAMGEIAPLADSSTPATNDDQPTLEEEALPPVLAAAVSVPEVVSVRAAKRAA-------IQGAKEEMEAKAXXXXXXXXXXXXXPATTYSRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTSETDCSGSEVHA 2019
MARRV+ELEQE AE+R + N R S R ER LRAKNEMLERQLAH++++ EETQLELAAA+KARF SS R S + P+ G G+L+ SPA +S SP+ P V+ G ++ SP V + G XXX XXX G SE S + LR ADR+HAS+ EE + DG G G + D WL+EQN WL++E+E+KD+ I+ALR+Q+E S +LREL SDDD+D + + RSF+D LL +G PA+P P + T D + G D A V E P GRV + +L+AV KH+ + L P A ++ + G++A NK P + ++ L + PL R SP + RR+ AGGVTG+VG M +APL ++ + + A XXXXXXX P +RAERKSRQA++KLGLR VKGVFRMT+RT+NGVVFVVK PDVF+HP+Q +YVVFG++ETD SGSEV A
Sbjct: 1 MARRVMELEQEAAESRDELSLQQDEHARRLALAGAQRGGGGEFNSSRRVSHGGGGDRAEERALRAKNEMLERQLAHMREEAEETQLELAAARKARFSTWSSRRLTRGRSESLQSSPALSARLERGDGSLNGGGVGAAPPRPLSPAGSSFSPSRLPEVLAAVSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLPRGVVPSPLVGSEGXXXXXXXXXXXXXXXXXXXXXXXXXXAEENDADGAESEVSNDELRAADRVHASALRARIEEKGESDGDG-----GPGGREXXXXXXXXXXXQDVAWLLEQNTWLIQELEAKDDFIQALREQMEQLQRREGHGPGPSS-----SMHSLRELGGSDNSDDDSDQEGGH---------RSFLDHLLHGTGGGGSNGQRPVDDHHEPAHPSVPTTVVSCDEGHPREVTTNDDAAAAAPGLGDGCAAAVALEAAAPRGRVSISLPAVKVLSAVKVGKHRDLVEIPDTQVHLPPVALVTSDVLPVEIPTVVGQQA-NKQPHQGAVPSAFSLGSAEQQQQPLTRSL-------SPTRSGRRQSAGGVTGIVGYAXXXXXXXXXXXXXXXXXXXXXXXXXXXMATVAPLPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGRQRATAKVXXXXXXXXXXXXXXXXXXXXXXXXAQESVPPLAHMNRAERKSRQAVEKLGLRAVKGVFRMTIRTTNGVVFVVKGPDVFRHPRQESYVVFGSAETDGSGSEVRA 754
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: A0A7S0JLI4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Minchinia chitonis TaxID=262233 RepID=A0A7S0JLI4_9EUKA) HSP 1 Score: 75.5 bits (184), Expect = 6.820e-13 Identity = 34/65 (52.31%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 1801 PATTYSRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTSETD 1995
P + +R+E+KSR+AM KLG+R V GV R+T++ S V+FV+ NPDVFK P +TYVVFG ++++
Sbjct: 38 PGSKQNRSEKKSRKAMQKLGMRPVPGVVRVTVKKSKSVLFVISNPDVFKSPNSDTYVVFGEAKSE 102
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: A0A7S1B8E0_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8E0_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.040e-12 Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 1801 PATTYSRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTSETDC--SGSEVHA 2019
P + +R+E+KSR+AM KLG+R V GV R+T++ S V+FV+ NPDVFK P +TYVVFG ++++ +G++ HA
Sbjct: 37 PGSKQNRSEKKSRKAMQKLGMRPVPGVVRVTVKKSKSVLFVISNPDVFKSPNSDTYVVFGEAKSEDLNAGAQAHA 111
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: A0A6T5SWL9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T5SWL9_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.530e-11 Identity = 33/61 (54.10%), Postives = 50/61 (81.97%), Query Frame = 1
Query: 1813 YSRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTSETD 1995
++RAE+KSR+A+ KLG+R V G+ RM+++ SN V+FV+ NPDVFK P +TYV+FG ++T+
Sbjct: 43 HNRAEKKSRKAIQKLGMRQVGGIVRMSVKKSNQVLFVITNPDVFKSPTADTYVIFGEAKTE 103
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: B8BV79_THAPS (NAC-A/B domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BV79_THAPS) HSP 1 Score: 74.3 bits (181), Expect = 1.800e-11 Identity = 33/64 (51.56%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 1813 YSRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTSETDCSG 2004
++RAE+KSR+A+ KLG+R + G+ RM+++ SN V+FV+ PDVFK P +TYVVFG ++T+ +G
Sbjct: 45 HNRAEKKSRKAIQKLGMRPIPGIVRMSVKKSNQVLFVINKPDVFKSPTADTYVVFGEAKTEDNG 108
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: A0A7S1DBY3_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBY3_CYCTE) HSP 1 Score: 72.0 bits (175), Expect = 5.340e-11 Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 1801 PATTYSRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTSETD 1995
P +R+E+KSR+AM KLG+R V GV R+T++ S V+FV+ PDVFK P +TYVVFG ++++
Sbjct: 46 PEAKQNRSEKKSRKAMQKLGMRPVPGVLRVTVKKSKNVLFVISKPDVFKSPTADTYVVFGEAKSE 110
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: A0A7J8UIG2_9ROSI (NAC-A/B domain-containing protein n=1 Tax=Gossypium klotzschianum TaxID=34286 RepID=A0A7J8UIG2_9ROSI) HSP 1 Score: 69.3 bits (168), Expect = 7.560e-11 Identity = 30/66 (45.45%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 1816 SRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTSETDCSGSEV 2013
SR+E+KS++AM KLG++++ GV R+T++ ++FV+ NPDVFK P NTY+VFG ++ + S++
Sbjct: 25 SRSEKKSQKAMLKLGMKSIPGVSRVTIKKGKNILFVISNPDVFKSPASNTYIVFGEAKIEDLSSQL 90
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: A0A0E0CCS8_9ORYZ (NAC-A/B domain-containing protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0CCS8_9ORYZ) HSP 1 Score: 70.1 bits (170), Expect = 9.240e-11 Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 1816 SRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTS---ETDCSGSE 2010
SR+E+KSR+AM KLG++T+ GV R+T++ S ++FV+ PDVFK P +TYV+F E D SG E
Sbjct: 22 SRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNILFVISKPDVFKSPNSDTYVIFAAQDDEEVDESGVE 89
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Match: A0A2B7XLZ2_9EURO (Nascent polypeptide-associated complex subunit alpha n=1 Tax=Polytolypa hystricis UAMH7299 TaxID=1447883 RepID=A0A2B7XLZ2_9EURO) HSP 1 Score: 72.4 bits (176), Expect = 9.290e-11 Identity = 34/101 (33.66%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 1717 RAAIQGAKEEMEAKAXXXXXXXXXXXXXPATTYSRAERKSRQAMDKLGLRTVKGVFRMTMRTSNGVVFVVKNPDVFKHPQQNTYVVFGTSETDCSGSEVHA 2019
+A ++ A E E++A T +SR E+K+R+A+ KLGL+ + G+ R+T+R ++FV+ PDV+K P NTY++FG ++ + S+ A
Sbjct: 17 KAGVEDAAESSESEAEAGEEEPTLPAGSAVTVHSRNEKKARKAIGKLGLKHIPGITRVTLRRPKNILFVINQPDVYKSPSSNTYIIFGEAKIEDLNSQAQA 117 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12959.1795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12959.1795.1 >prot_S-dermatodea_contig12959.1795.1 ID=prot_S-dermatodea_contig12959.1795.1|Name=mRNA_S-dermatodea_contig12959.1795.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=671bp MLLDEKEADAEAHEGEKEALWRRIQDMARRVVELEQELAEARSFANTDNNback to top mRNA from alignment at S-dermatodea_contig12959:350..6279- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12959.1795.1 ID=mRNA_S-dermatodea_contig12959.1795.1|Name=mRNA_S-dermatodea_contig12959.1795.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5930bp|location=Sequence derived from alignment at S-dermatodea_contig12959:350..6279- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12959:350..6279- >mRNA_S-dermatodea_contig12959.1795.1 ID=mRNA_S-dermatodea_contig12959.1795.1|Name=mRNA_S-dermatodea_contig12959.1795.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4026bp|location=Sequence derived from alignment at S-dermatodea_contig12959:350..6279- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |