mRNA_S-dermatodea_contig12956.1794.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12956.1794.1
Unique NamemRNA_S-dermatodea_contig12956.1794.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12956.1794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12956contigS-dermatodea_contig12956:1131..4975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1146
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12956.1794.1prot_S-dermatodea_contig12956.1794.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12956 1442..4716 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924268.6189644-UTR-S-dermatodea_contig12956:1130..14411622924268.6189644-UTR-S-dermatodea_contig12956:1130..1441Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12956 1131..1441 -
1694079138.4920616-UTR-S-dermatodea_contig12956:1130..14411694079138.4920616-UTR-S-dermatodea_contig12956:1130..1441Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12956 1131..1441 -
1622924268.6762617-UTR-S-dermatodea_contig12956:4716..49751622924268.6762617-UTR-S-dermatodea_contig12956:4716..4975Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12956 4717..4975 -
1694079138.531138-UTR-S-dermatodea_contig12956:4716..49751694079138.531138-UTR-S-dermatodea_contig12956:4716..4975Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12956 4717..4975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924268.6289995-CDS-S-dermatodea_contig12956:1441..18751622924268.6289995-CDS-S-dermatodea_contig12956:1441..1875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12956 1442..1875 -
1694079138.5016396-CDS-S-dermatodea_contig12956:1441..18751694079138.5016396-CDS-S-dermatodea_contig12956:1441..1875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12956 1442..1875 -
1622924268.64734-CDS-S-dermatodea_contig12956:3720..38321622924268.64734-CDS-S-dermatodea_contig12956:3720..3832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12956 3721..3832 -
1694079138.5115685-CDS-S-dermatodea_contig12956:3720..38321694079138.5115685-CDS-S-dermatodea_contig12956:3720..3832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12956 3721..3832 -
1622924268.6652608-CDS-S-dermatodea_contig12956:4686..47161622924268.6652608-CDS-S-dermatodea_contig12956:4686..4716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12956 4687..4716 -
1694079138.5216453-CDS-S-dermatodea_contig12956:4686..47161694079138.5216453-CDS-S-dermatodea_contig12956:4686..4716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12956 4687..4716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12956.1794.1

>prot_S-dermatodea_contig12956.1794.1 ID=prot_S-dermatodea_contig12956.1794.1|Name=mRNA_S-dermatodea_contig12956.1794.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=192bp
MEIDKDGSSDAYWVLAGIDAVERGLSYKICISEDLARTVHPSDTRWKCDF
YHTGYFTAVSKSDFSVYCGSCSGSSRKTLAQQATILQRRSINESARDAGI
DIRFFILFGLALLRLCAIYLMREQEEQLPRAYARTVPPNNALGVSPAPHR
GDPALASVVEFQPLVRRHLPEATASVVVSARPPNFQGQDNV*
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mRNA from alignment at S-dermatodea_contig12956:1131..4975-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12956.1794.1 ID=mRNA_S-dermatodea_contig12956.1794.1|Name=mRNA_S-dermatodea_contig12956.1794.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3845bp|location=Sequence derived from alignment at S-dermatodea_contig12956:1131..4975- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCGAGGACGTCCACGGCGGGCATCTGACCAATGTCGTCAGCGTCAGCA
AAGCCCTGCGACCTGTCGGGGGGCTCTCGAGACAGCGACGCCATCTTACG
CTTACCTGCAGCAAGGACAGTCAACTGACAGTCTTCGCTCCAAAGCTCCC
TGCCGCGACTGGATGCTACACAAAAGGAGGAGAGCGTTCCAACGGGGCGG
CGATATACACCCCTTCCGTCGGTGGCACTGTAGCAGCAGTAAAATATGTG
ATCAGCGCGATGGAGATTGACAAAGACGGTTCTTCCGATGTGAGTTCTGA
TCATATTTTGGTAAATAGTATTGCCGCGCTGCGCTTGCGCCTCCTAGCTC
CGAGAAAGAACCAGGACGGGCGGTGTGTCTGTGTTGTGCCTTTGTGCTCG
GTCGTCAGTTCCTTGAGGTAAAAATAAGGGAAACGTGTCAGACGCAACAC
GTCAGTTCTCTTTTTGAGGATGTTTGTGTATGGCACTCAAAGCTGCACGT
TCTGCTGAAAGGAACCAAACCATTTGAGCATCCAGGCGTCTGACGATAAA
CTGTTGGTCATAGAGAAATTCCTGGCGGGGAGTAGGCCCCGTGTTTCGCT
CCCCGTTGGATGAGAGTATTCAGCCCGGGAGAGTTTGTGTCGTTTTTCTA
CTACCTTTTGCGGTGTTAGCCCAGTGCCTTTTGTGCTTCGCTTTTTCGTA
CGTGCTCGGCTGTTGCAATACGTTTGTTGTTTACCGTTAAACAGCAAGAA
TTTTTTATACTACGGTTGCTGTAGGCCCTGCCCCCCAGTGGTCTGACCGG
GGACTCCAACGTCTTGGCTGGTGGAAGTGGTTGAGGGTTCGAATGCTGGA
AAATTGTCACTTTTCAGTGGTTAACTTTCACCGCGGAAAGCACGCGAGCG
TGAGTAAGCAGAGTTGGGTGAAAAGCAACGAGCTGCTGGAATACTGTCCT
CGATGCGCTTTAAAAACCAAAGGCACCTACCGGGGGAAAGACGGGAGGGT
CGGTTGTGACCACGAGCAGCCCAGCTGCCTGAGGTGATATGTGATGACTG
AAAAACAACATAGAGCGATGAGCCACAACGACATTTACGTATGTCCTGGG
CTCTTCCTTTCTTCTCCTTCCCGATCTCGCGTGTTCTTCACAGGCCTATT
GGGTGCTCGCCGGCATCGACGCTGTGGAGAGAGGTTTGAGTTATAAAATC
TGTATTTCGGAGGACCTTGCCCGTACTGTGCACCCATCGGATACGCGTTG
GAAATGTGAGTACTGAACAAACACGGCTCCCCCCAACGCATCCCTACTCC
CCTTCCGTCCAGTTTGTCATCCTCCACGGAGAGGGCGTTCGTCATCACAG
TCGAATGTTTTAAGCGCAATCAGGTATTGCCGTTGTCATCACGAAGAATG
TGCTCGTCGGGAGCACTCTCACTCATAAACATTACGCCGTGCATGAATGT
GCGCACGTTCAGGGGCAATCGGGAGACTAAACCCGTGTGAACTCAACACG
CCGGGAAGGGAGCTGCCTCGCCTCTAGGCAGGACGCGGGCGGCGCTCTAT
CTCATCCCAGACTAAGTACTAACACATTAACTGGCATTTCACCTTGAGGA
AATCTACACCTGAATCGATCGGAAGCCAGAGTACACAATCCCCGTCTAGA
CAGTATATGCAGCATATTGCAGAATGCTGCCTGGTGATACTGTAGCGCTG
GTATCTATATGTTTTAAGAATAGTGGGTTCCTTTCATAACCTAAAGAGGT
AACGGCCCTGATGGGGCATTGGATTATACTTCCATTGTTTTTTTTCCGCA
TACAGTGTCCATGCTTACCTGGGACGACTTGCGGCCACTCGGGATCACCC
CGTATCTCCCTTGTCCTCGCCTTTTGTTTCTATCGCGCAACGGGGAAAAT
TGTGTGAAAATCGACGAGCTGCGGGAGTGCTGAACCCAATGCGCGACAAA
AACCAAAGGCACGTACCGGGGGAGAGACGGGATAACCCCTTGTGATGCCG
AGCAGCACAGGTACCAGACTGGGGGTTAGATGTGATGACAAAAAAACAGA
AAGGGTGCAACACTCTTATACATTTTGCCTCGACTTCTACCGTTTAATAA
CATTTCGTTGTTTATGTCCGTCGAGTATCTCTAAAACCAAACCCAGGGCC
GTCTTCACTTTTCACAGAATGTACACCAACAGTAAATCACATGCCCGAGC
ACTATCGTGCAGCTGGCGTCTTTAACACCAGGCCGACTAATACCACTTCC
CGCCCCTGCTGAAACCCAGCAAGCCCCCGAGATAAGAGTAGTGGAAAACC
ACCCGCAGAGGCGCCGAAAACCATCCCCCGTGTTCTTCAATTAAAGGTAT
TTTGTTGGAGGTTTTTTACTTTGACGTTCAAACGGGTTGGGATCTTGCTT
CGTGCTGGGATCACGCATGTTCGGCCGGCTTCAATACCCGATTTGTCTAT
CTCTTGATGTGTCGGTTTGTCTCTTGGAGGGTCCAAGACAGTTTAGTTCC
TGCAAGACATAGGCACATTCCCGGATGTAAGGAATATTCTGCCCGTTCAA
TTGTTACGACGTGAATCGCCGTATGTGCTATTAATACTGACCAGGGAAGG
AACTCGCCGTGTTCTTCGTATTTTTGCGAAACACCGGGGAGGTTTCACAA
TTGGGAAAAGGTTAAAGCCCATCGTAGTGTGAGCCCAATCAGCAGCAAGA
TAAACACTCTTGCAGCTCAGGCTACATGAAACGTAGCGGGGATTTTGGTT
TACATGCGCGAGGGTATATGTGCCTGCTTGCGGCGCCGATAGCGCGCTGT
TCCATGAACATGCGGTTTTTCACGGGGGTGAAATGGCAAAATTGACATCA
ACCCCTGTTACAAGCCACACATATATTATGATCCTACGTAGGAATATAAC
CAATAAATTTAATGTGGAAAGGCGCCATTTACCGGTATGTGCATAGTGCC
TTTCAACGGAGGACGTTCATCCCCACACTCTTTCTCACGACAATGTTTGG
TTTATGTAGCTATCTTGACTTCACCTATGTCAGCAATATTTTCCCCTTTC
AATCGTCGTTTAACACGTGATCGCTGCTTGCTGTGCTCCTGTGTGGACAG
GCGATTTTTATCACACAGGGTACTTCACGGCCGTCTCTAAATCAGACTTC
AGCGTCTATTGCGGGTCCTGTTCAGGGTCTTCCCGCAAGACACTTGCTCA
GCAAGCAACCATCCTACAACGCCGTTCCATCAACGAAAGCGCGAGAGACG
CGGGCATTGATATCCGCTTTTTCATATTATTTGGACTAGCTTTGTTGAGG
CTCTGCGCCATATACCTAATGCGTGAGCAGGAGGAGCAACTACCCAGGGC
CTACGCACGAACCGTGCCCCCCAATAATGCACTAGGCGTTAGCCCTGCTC
CCCACCGTGGAGACCCAGCACTTGCATCCGTGGTTGAGTTTCAACCTTTG
GTAAGGCGCCACTTGCCTGAGGCTACTGCTTCTGTCGTTGTAAGTGCCAG
ACCCCCCAATTTCCAGGGGCAGGATAATGTCTAAGTTTCGGGCATTCTCT
GATGGTGTTTGCCGTCATATATATATAAATATATGGGCTTGGAAAGAGTG
GGGCGCCGCGTGGAGCTAGTAAAGGTACGTATATATACAAACGTGGAGAA
GTTAAGTGATATTGCCAATACAGTATGTGTGCCTTTGCTGTCCCAAACTG
TTATCAGCTCGACAAGGTACGACCTCTATGGATGCACGGTGCCAGCTTCA
ATCAATCGTGCTTAGTGAGGGATTACAGCAGAGAGACGTCGATCGATGGA
CAATCTTGGAAATGTTTTTTGGAGACTACCAAATAATCCAACGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12956:1131..4975-

>mRNA_S-dermatodea_contig12956.1794.1 ID=mRNA_S-dermatodea_contig12956.1794.1|Name=mRNA_S-dermatodea_contig12956.1794.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at S-dermatodea_contig12956:1131..4975- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGATTGACAAAGACGGTTCTTCCGATATGGAGATTGACAAAGACGG
TTCTTCCGATGCCTATTGGGTGCTCGCCGGCATCGACGCTGTGGAGAGAG
GTTTGAGTTATAAAATCTGTATTTCGGAGGACCTTGCCCGTACTGTGCAC
CCATCGGATACGCGTTGGAAATGCCTATTGGGTGCTCGCCGGCATCGACG
CTGTGGAGAGAGGTTTGAGTTATAAAATCTGTATTTCGGAGGACCTTGCC
CGTACTGTGCACCCATCGGATACGCGTTGGAAATGCGATTTTTATCACAC
AGGGTACTTCACGGCCGTCTCTAAATCAGACTTCAGCGTCTATTGCGGGT
CCTGTTCAGGGTCTTCCCGCAAGACACTTGCTCAGCAAGCAACCATCCTA
CAACGCCGTTCCATCAACGAAAGCGCGAGAGACGCGGGCATTGATATCCG
CTTTTTCATATTATTTGGACTAGCTTTGTTGAGGCTCTGCGCCATATACC
TAATGCGTGAGCAGGAGGAGCAACTACCCAGGGCCTACGCACGAACCGTG
CCCCCCAATAATGCACTAGGCGTTAGCCCTGCTCCCCACCGTGGAGACCC
AGCACTTGCATCCGTGGTTGAGTTTCAACCTTTGGTAAGGCGCCACTTGC
CTGAGGCTACTGCTTCTGTCGTTGTAAGTGCCAGACCCCCCAATTTCCAG
GGGCAGGATAATGTCTAAGCGATTTTTATCACACAGGGTACTTCACGGCC
GTCTCTAAATCAGACTTCAGCGTCTATTGCGGGTCCTGTTCAGGGTCTTC
CCGCAAGACACTTGCTCAGCAAGCAACCATCCTACAACGCCGTTCCATCA
ACGAAAGCGCGAGAGACGCGGGCATTGATATCCGCTTTTTCATATTATTT
GGACTAGCTTTGTTGAGGCTCTGCGCCATATACCTAATGCGTGAGCAGGA
GGAGCAACTACCCAGGGCCTACGCACGAACCGTGCCCCCCAATAATGCAC
TAGGCGTTAGCCCTGCTCCCCACCGTGGAGACCCAGCACTTGCATCCGTG
GTTGAGTTTCAACCTTTGGTAAGGCGCCACTTGCCTGAGGCTACTGCTTC
TGTCGTTGTAAGTGCCAGACCCCCCAATTTCCAGGGGCAGGATAATGTCT
AA
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