mRNA_S-dermatodea_contig9995.17911.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9995.17911.1
Unique NamemRNA_S-dermatodea_contig9995.17911.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 1.010e-138
Identity = 210/264 (79.55%), Postives = 244/264 (92.42%), Query Frame = 1 
Query:    1 SYDNFISMVADSLRFVGHTLGLDCVAYTMVQHICQTNRRFMDESGLTLERWVTNLSTFAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWSITQAQVDGKGGGDVLRTENASFGSTVKPIRRARHLLQESTENAGASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTMLQATEFVCFAKTWIRNKCPSIETLITKFRLQPRMAFHIWRPVINEHLMRHWFPKAGTK 792
            SYDNFISMVADS++FVG TLGLDC+AYTMVQH+CQ+NR F+ +SGL LERWVTNLSTFAGLL+RK+P+ +SK +LSWAVR LGEGGE AMAAGK+LREVLH+AGGVQVLDGWSITQAQVDGKGGGDVLR ENASFGSTVKPI+RA+ +LQE+TE AGASLPLLVLPALQ  +LLYEGGS+DDQMRGKPQPHLKVLGHR+DETHTT+LQA EFVC +K WI++KCP+I+TL+T + L+PR+ FHIWRPVINE+L++ WFPKAGTK
Sbjct: 1016 SYDNFISMVADSMKFVGKTLGLDCMAYTMVQHLCQSNRSFVSDSGLDLERWVTNLSTFAGLLHRKNPDADSKPLLSWAVRSLGEGGEPAMAAGKVLREVLHKAGGVQVLDGWSITQAQVDGKGGGDVLRQENASFGSTVKPIKRAKVILQEATEKAGASLPLLVLPALQAGSLLYEGGSLDDQMRGKPQPHLKVLGHRADETHTTLLQAMEFVC-SKAWIKSKCPAIKTLLTTYGLEPRVVFHIWRPVINENLIKCWFPKAGTK 1278
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BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: UPI0019052288 (transcription factor/nuclear export subunit protein 2-domain-containing protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019052288)

HSP 1 Score: 89.4 bits (220), Expect = 2.050e-16
Identity = 71/258 (27.52%), Postives = 123/258 (47.67%), Query Frame = 1 
Query:    1 SYDNFISMVADSLRFVGHTLGLDCVAYTMVQHICQTNRRFMDESGLTLERWVTNLSTFAGLLYRKHPET-ESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWSITQAQVDGKGGGDVLRTENASFGSTVKPIRRARHLLQESTENAGASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTMLQATEFVCFAK-TWIRNKCPSIETLITKFRLQPRMAFHIWRPVINEHLMRH 768
            +YDN I  +A+S R + + LG D + Y+++     + +  M E G ++  W+ +LST+   LY+K   + +S  +L      L     A +    +L+E++ +    Q+    ++T  QV   GGG           ST+ P +     L  + +    ++ LLVL A Q E  +        +   K + HLK + +  DE    + Q  EF+  A  T   +  PS+  L T ++LQP +AFHIWRP +++ ++ H
Sbjct:  567 AYDNLIEAIAESARSLTY-LGYDVLVYSVLTAFTNSAKPRMKEDGTSVAMWLQSLSTYTATLYKKFGGSMDSGPILQLLAHRLKNFRSADLI---ILKELIAKT--TQIQPQANLTDDQVACMGGG-----------STLHPNKNGIRRLSGALQRTDLTVALLVLIAQQREFCI--------ETVDKSEEHLKHISNLYDECQAILFQYVEFLISAYGTDYASLLPSLHELCTTYKLQPDIAFHIWRPALHDPILTH 799
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BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: A0A316W112_9BASI (THO complex subunit 2 n=1 Tax=Ceraceosorus guamensis TaxID=1522189 RepID=A0A316W112_9BASI)

HSP 1 Score: 85.9 bits (211), Expect = 3.110e-15
Identity = 64/255 (25.10%), Postives = 121/255 (47.45%), Query Frame = 1 
Query:    1 SYDNFISMVADSLRFVGHTLGLDCVAYTMVQHICQTNRRFMDESGLTLERWVTNLSTFAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWSITQAQVDGKGGGDVLRTE-----NASFGS-TVKPIRRARHLLQESTENAGASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTMLQATEFVC--FAKTWIRNKCPSIETLITKFRLQPRMAFHIWRP 741
            +YDN I+ + +  +++   L  D   + ++  +    +    + G  +  W+ +LS+FAG+LYR+H E +   VL +    L +     +    ++RE++ +  G++ L   ++   Q+    GG +LR E     NA  GS T +    +   L  + E +  ++PLL+L A Q +A +Y        + G  +  LK +G+  D    T+ Q  EF+      +      P +  L ++F ++P +AFH+ RP
Sbjct:  801 AYDNLIAPIVECAKYLSE-LEYDVFTFILLDALSNPEKERTKQDGTNISLWLKSLSSFAGMLYRRHKEIDVGPVLQYMANQLKQDNSKDLV---LIRELVLKMSGIEPLA--NLGDKQIAALTGGRLLRREAMMVANAQIGSDTRREFHDSGARLLLAMEASCMTIPLLILIAQQRQACIY--------LIGDDEGGLKYMGNAFDSCQETLFQYVEFLLTQLEPSAYSTLIPKLSDLYSRFSIEPAIAFHMARP 1041
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BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: A0A0P1BR10_9BASI (THO complex subunit 2 n=1 Tax=Ceraceosorus bombacis TaxID=401625 RepID=A0A0P1BR10_9BASI)

HSP 1 Score: 85.9 bits (211), Expect = 3.130e-15
Identity = 64/255 (25.10%), Postives = 121/255 (47.45%), Query Frame = 1 
Query:    1 SYDNFISMVADSLRFVGHTLGLDCVAYTMVQHICQTNRRFMDESGLTLERWVTNLSTFAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWSITQAQVDGKGGGDVLRTE-----NASFGS-TVKPIRRARHLLQESTENAGASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTMLQATEFVC--FAKTWIRNKCPSIETLITKFRLQPRMAFHIWRP 741
            +YDN I+ + +  +++   L  D   + ++  +    +    + G  +  W+ +LS+FAG+LYR+H E +   VL +    L +     +    ++RE++ +  G++ L   ++   Q+    GG +LR E     NA  GS T +    +   L  + E +  ++PLL+L A Q +A +Y        + G  +  LK +G+  D    T+ Q  EF+      +      P +  L ++F ++P +AFH+ RP
Sbjct:  784 AYDNLIAPIVECAKYLSE-LEYDVFTFILLDALSNPEKERTKQDGTNISLWLKSLSSFAGMLYRRHKEIDVGPVLQYMANQLKQDNSKDLV---LIRELVLKMSGIEPLA--NLGDKQIAALTGGRLLRREAMMVANAQIGSDTRREFHDSGARLLLAMEASCMTIPLLILIAQQRQACIY--------LIGDDEGGLKYMGNAFDSCQETLFQYVEFLLTQLEPSAYSTLIPKLSDLYSRFSIEPAIAFHMARP 1024
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BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: H3EEY0_PRIPA (THO complex subunit 2 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=H3EEY0_PRIPA)

HSP 1 Score: 79.7 bits (195), Expect = 3.740e-13
Identity = 66/250 (26.40%), Postives = 120/250 (48.00%), Query Frame = 1 
Query:    1 SYDNFISMVADSLRFVGHTLGLDCVAYTMVQHICQTNRRFMDESGLTLERWVTNLSTFAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWSITQAQVDGKGGGDVLRTENASFGSTVKPIRRARHLLQESTENAGASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTMLQATEFVCFAKTWIRNKCPSIETLITKFRLQPRMAFHIWRPVIN 750
            ++DN I  V D+LRF+ + L LD + + +++ +   ++  +  S  T   W+ +L+T  G L +K+   E   VL +    L     A +    +L E+LH   G++       TQ  ++   GG++LR E  S+GS+++  ++A   L+++      ++ L +L A Q +A+LY+G         K  P LK+ G  +D+   T++Q + F+      + N     E    K+ L    AF + RP   
Sbjct:  570 TFDNLIHPVVDALRFLTN-LELDVLLFCVLEQLASPSKESLKASDGTTSSWLISLATMVGALLKKYT-IELAPVLDYVSMQLRNNKSADLL---ILNEMLHSMAGIEKAA--QATQEHIEALSGGELLRQEAGSYGSSIRN-KKAAVRLRDAILKEDLAVGLSILVAQQRDAILYQGS--------KEMP-LKLTGEMADQCRDTLVQFSSFL------LENM--KAEEYARKYSLPVDAAFFLARPAFR 794
[Close]
BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: F4NSU7_BATDJ (THO complex subunit 2 n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4NSU7_BATDJ)

HSP 1 Score: 79.0 bits (193), Expect = 6.550e-13
Identity = 61/257 (23.74%), Postives = 131/257 (50.97%), Query Frame = 1 
Query:    1 SYDNFISMVADSLRFVGHTLGLDCVAYTMVQHICQTNRRFMDESGLTLERWVTNLSTFAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWSITQAQVDGKGGGDVLRTENASFGSTVKPIRRARHLLQESTENAGASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTMLQATEFV-CFAKTWIRNK-CPSIETLITKFRLQPRMAFHIWRPVINEHLMR 765
            SYDN I +V D+ R++   L  D +++ +++ +    ++ ++E+G  +  W+  LS+F G+L R+H E +   +L +    L       +    +L++++    G++ LD    T+ Q+D   GG+ +R E A    +++  R+    L ++   +  ++P+ +L A Q + +++   + +          LK+LG  +D      L   +F+ C     + +K   +++ ++ +F L   +AFHI RPV++ H++R
Sbjct:  731 SYDNMIPVVVDASRYLTD-LEFDVMSFCLIEALSDRRKQRVEENGTYISPWLKALSSFTGMLLRRH-EVDMTGMLQYIANQLASDNVYDLI---VLQDIIISMSGIKPLD--DATEHQLDALAGGETVRRE-ALILESLRLTRKPTSRLVDTLVQSQLAMPIGMLIARQRKEIIFRTNTDE----------LKILGWLNDYCQCKFLLYFDFLSCNLSIDVYSKDLATLDEMVGEFGLDMEVAFHILRPVLS-HVLR 968
[Close]
BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: A0A177W8L4_BATDL (THO complex subunit 2 n=2 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177W8L4_BATDL)

HSP 1 Score: 79.0 bits (193), Expect = 7.050e-13
Identity = 61/257 (23.74%), Postives = 131/257 (50.97%), Query Frame = 1 
Query:    1 SYDNFISMVADSLRFVGHTLGLDCVAYTMVQHICQTNRRFMDESGLTLERWVTNLSTFAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWSITQAQVDGKGGGDVLRTENASFGSTVKPIRRARHLLQESTENAGASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTMLQATEFV-CFAKTWIRNK-CPSIETLITKFRLQPRMAFHIWRPVINEHLMR 765
            SYDN I +V D+ R++   L  D +++ +++ +    ++ ++E+G  +  W+  LS+F G+L R+H E +   +L +    L       +    +L++++    G++ LD    T+ Q+D   GG+ +R E A    +++  R+    L ++   +  ++P+ +L A Q + +++   + +          LK+LG  +D      L   +F+ C     + +K   +++ ++ +F L   +AFHI RPV++ H++R
Sbjct:  731 SYDNMIPVVVDASRYLTD-LEFDVMSFCLIEALSDRRKQRVEENGTYISPWLKALSSFTGMLLRRH-EVDMTGMLQYIANQLASDNVYDLI---VLQDIIISMSGIKPLD--DATEHQLDALAGGETVRRE-ALILESLRLTRKPTSRLVDTLVQSQLAMPIGMLIARQRKEIIFRTNTDE----------LKILGWLNDYCQCKFLLYFDFLSCNLSIDVYSKDLATLDEMVGEFGLDMEVAFHILRPVLS-HVLR 968
[Close]
BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: A0A6G1I866_9PEZI (THO complex subunit 2 n=1 Tax=Trichodelitschia bisporula TaxID=703511 RepID=A0A6G1I866_9PEZI)

HSP 1 Score: 77.8 bits (190), Expect = 1.750e-12
Identity = 67/258 (25.97%), Postives = 123/258 (47.67%), Query Frame = 1 
Query:    1 SYDNFISMVADSLRFVGHTLGLDCVAYTMVQHICQTNRRFMDESGLTLERWVTNLSTFAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWSITQAQVDGKGGGDVLR--TENASFGSTVKPIRRARHLLQESTENAGASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTMLQATEFVCF---AKTWIRNKCPSIETLITKFRLQPRMAFHIWRPVINEHL 759
            SYDN I +V +  R+  + LG D + ++++  +  + R  M   G+    W+  LSTFAG ++R++    S  +L +    L +G    +   ++L E++    G++    +S  + QV     G VLR  T  + F    +   +++ L++   ++  A L LLV  A + +   +   S D  +        KV+G+  D+ H   +Q  + +     AK + +   P++  LI+K+ LQP +A+ I RP I   L
Sbjct:  861 SYDNLIEVVVECARYFTY-LGYDVLTWSLMSALGGSGRNRMQGDGMLTSSWLKALSTFAGRVFRRYSTMNSTPILQYVASQLQQGISTDL---EVLEEIITSMAGIRADSNYS--EEQVFALASGPVLRDQTLRSVFDKRHEAKVQSKRLIKSLLDSGLAGL-LLVAIAQERQYYPFREASEDAPV--------KVIGNNFDKLHRAFMQYLDMLRTNLPAKDFDQT-VPTLPELISKYALQPAVAYTIMRPSIQHQL 1102
[Close]
BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: A0A7S2EHA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EHA3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.170e-8
Identity = 51/184 (27.72%), Postives = 91/184 (49.46%), Query Frame = 1 
Query:  109 NRRFMDESGLTLERWVTNLSTFAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWS---ITQAQVDGKGGGDVLRTENASFG----STVKPIRRARHLLQESTENAGASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTMLQATEFV 639
            +R  +   G+ + +W+++L TF G  Y+K P+ E + +L +    L +G    +    +LR +L  AGG    D  S   ++Q Q++G+ G  +L+ E ASFG    S  K  RR R +LQ+  ++ G +L L++L  ++   + +   S           H+K++G+  D     M    EF+
Sbjct:    8 DRSKLKMDGVNVTQWLSSLETFTGAFYKKFPDVELRGILQYLTHRLQQGQILELG---VLRSLLKTAGGYGFADYGSTASLSQVQLEGRCGSQLLKRETASFGIVEKSNKKASRRLRCVLQK--DDLGVTL-LILLAQIRFRVMFHVSSSSPK--------HIKLIGNLYDNCVVVMGLMLEFL 177
[Close]
BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Match: A0A7S1ZET3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZET3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.480e-8
Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:  109 NRRFMDESGLTLERWVTNLSTFAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQVLDGWS---ITQAQVDGKGGGDVLRTENASFG----STVKPIRRARHLLQESTENAGASLPLLV 492
            +R  +   G+ + +W+++L TF G  Y+K P+ E + +L +    L +G    +    +LR +L  AGG    D  S   ++Q Q++G+ G  +L+ E ASFG    S  K  RR R +LQ+  ++ G +L +L+
Sbjct:    8 DRSKLKMDGVNVTQWLSSLETFTGAFYKKFPDVELRGILQYLTHRLQQGQILELG---VLRSLLKTAGGYGFADYGSTASLSQVQLEGRCGSQLLKRETASFGIVEKSNKKASRRLRCVLQK--DDLGVTLLILL 137
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9995.17911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LD24_ECTSI1.010e-13879.55THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
UPI00190522882.050e-1627.52transcription factor/nuclear export subunit protei... [more]
A0A316W112_9BASI3.110e-1525.10THO complex subunit 2 n=1 Tax=Ceraceosorus guamens... [more]
A0A0P1BR10_9BASI3.130e-1525.10THO complex subunit 2 n=1 Tax=Ceraceosorus bombaci... [more]
H3EEY0_PRIPA3.740e-1326.40THO complex subunit 2 n=2 Tax=Pristionchus pacific... [more]
F4NSU7_BATDJ6.550e-1323.74THO complex subunit 2 n=1 Tax=Batrachochytrium den... [more]
A0A177W8L4_BATDL7.050e-1323.74THO complex subunit 2 n=2 Tax=Batrachochytrium den... [more]
A0A6G1I866_9PEZI1.750e-1225.97THO complex subunit 2 n=1 Tax=Trichodelitschia bis... [more]
A0A7S2EHA3_9STRA1.170e-827.72Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1ZET3_9STRA4.480e-831.11Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9995contigS-dermatodea_contig9995:402..7416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score430.6
Seed ortholog evalue5e-118
Seed eggNOG ortholog2880.D8LD24
Preferred nameZC3H13
KEGG koko:K12837,ko:K12879
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
GOsGO:0001510,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016071,GO:0016556,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0034708,GO:0036396,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045293,GO:0046483,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:2000036
EggNOG free text desc.mRNA transport
EggNOG OGsKOG1874@1,KOG1874@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTHO complex, subunitTHOC2, C-terminal
Ec32 orthologEc-11_000130.1
Exons6
Model size792
Cds size771
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.4389255-UTR-S-dermatodea_contig9995:401..4221622925442.4389255-UTR-S-dermatodea_contig9995:401..422Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9995 402..422 +
1694079936.6282187-UTR-S-dermatodea_contig9995:401..4221694079936.6282187-UTR-S-dermatodea_contig9995:401..422Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9995 402..422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.4555955-CDS-S-dermatodea_contig9995:422..5501622925442.4555955-CDS-S-dermatodea_contig9995:422..550Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 423..550 +
1694079936.641591-CDS-S-dermatodea_contig9995:422..5501694079936.641591-CDS-S-dermatodea_contig9995:422..550Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 423..550 +
1622925442.4688714-CDS-S-dermatodea_contig9995:1757..18901622925442.4688714-CDS-S-dermatodea_contig9995:1757..1890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 1758..1890 +
1694079936.6535654-CDS-S-dermatodea_contig9995:1757..18901694079936.6535654-CDS-S-dermatodea_contig9995:1757..1890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 1758..1890 +
1622925442.4791224-CDS-S-dermatodea_contig9995:3176..33441622925442.4791224-CDS-S-dermatodea_contig9995:3176..3344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 3177..3344 +
1694079936.6648426-CDS-S-dermatodea_contig9995:3176..33441694079936.6648426-CDS-S-dermatodea_contig9995:3176..3344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 3177..3344 +
1622925442.49014-CDS-S-dermatodea_contig9995:5164..52931622925442.49014-CDS-S-dermatodea_contig9995:5164..5293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 5165..5293 +
1694079936.678075-CDS-S-dermatodea_contig9995:5164..52931694079936.678075-CDS-S-dermatodea_contig9995:5164..5293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 5165..5293 +
1622925442.5096862-CDS-S-dermatodea_contig9995:5989..61001622925442.5096862-CDS-S-dermatodea_contig9995:5989..6100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 5990..6100 +
1694079936.6918504-CDS-S-dermatodea_contig9995:5989..61001694079936.6918504-CDS-S-dermatodea_contig9995:5989..6100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 5990..6100 +
1622925442.5216043-CDS-S-dermatodea_contig9995:7314..74161622925442.5216043-CDS-S-dermatodea_contig9995:7314..7416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 7315..7416 +
1694079936.7104185-CDS-S-dermatodea_contig9995:7314..74161694079936.7104185-CDS-S-dermatodea_contig9995:7314..7416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9995 7315..7416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9995.17911.1prot_S-dermatodea_contig9995.17911.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9995 423..7416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9995.17911.1

>prot_S-dermatodea_contig9995.17911.1 ID=prot_S-dermatodea_contig9995.17911.1|Name=mRNA_S-dermatodea_contig9995.17911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=257bp
MVADSLRFVGHTLGLDCVAYTMVQHICQTNRRFMDESGLTLERWVTNLST
FAGLLYRKHPETESKAVLSWAVRCLGEGGEAAMAAGKMLREVLHQAGGVQ
VLDGWSITQAQVDGKGGGDVLRTENASFGSTVKPIRRARHLLQESTENAG
ASLPLLVLPALQTEALLYEGGSMDDQMRGKPQPHLKVLGHRSDETHTTML
QATEFVCFAKTWIRNKCPSIETLITKFRLQPRMAFHIWRPVINEHLMRHW
FPKAGTK
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mRNA from alignment at S-dermatodea_contig9995:402..7416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9995.17911.1 ID=mRNA_S-dermatodea_contig9995.17911.1|Name=mRNA_S-dermatodea_contig9995.17911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7015bp|location=Sequence derived from alignment at S-dermatodea_contig9995:402..7416+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTACGACAATTTCATCTCGATGGTGGCCGACAGCCTGCGCTTCGTGGG
ACACACGCTCGGCCTGGACTGCGTGGCGTACACAATGGTGCAGCACATCT
GCCAGACCAACCGGCGCTTCATGGACGAAAGCGGCCTCACTCTGGAAAGG
TATAATTGATTGATTTGATTTGATTTGATTTGATTTGATTTGATTTGATT
TGATTTGATTTGATTTGATTTGCACACGTATAGCCGAGCGGCTTAATCCG
ACCTATCCGACTTGTGGTNNNNNNNNNNAAACACCTAATCATAATTCTAC
TTCTACTATACACCGTACCGCCCCTGGTACTTACTATGGTACAAGAAATA
AGAAATAGCAAAATGCTGTTATAATATTAAGTCAGTACGTAGCTCTATAC
CTTAAAATACGTGTGTTGTCATTTTCATGTATTGTTATCATACTTCGTAC
TAACATTACCTTTTCTGTGTTTTTCGGTACAGCAGTGGTAACAAACAATA
CATGTCGTTGTCTGTTAGACTCTTGACACTTCGTAGACAACGAATTTCCC
CCCGTTTTTTACTGGCCAAAGCTGACAGTCTCTGGTCGGAATAGCCGTTG
AGGAAATTTGAGGAGATTTGGCTCGACGCGGCTGCGCTACAAGCCTCGGG
TGAAGGTTAAGATTCTGAGGGCGGTATGGGTTAGGGTTAAAGAGTATAGG
TTACAGGGTAAAGGTTACAGTTACAGGGTAAGGGTTGAAGAGTTAGGGTT
AGGGTGGGTTGGGTCGACGCCCGGGGCCCCGTGCCAGCGCTTACACAACA
CCATTTTATATAAAAAACGCTGGATTATCATACATATGCTTCTCGGGAAA
ATCTTCCTGTGTATGAAGTGGGAAAATTCCCCTGCATAGTTTTGGCTTAT
TCCAAAGGTCGGAAAGTGGCCCCCAATTTTTTTTTTTTTCATCTCCGGTA
AAGCTGTACCTATTAATAGCTAGGTGCCTTACTTCACTTTTTCGGTGTTT
TTTGGCATATTGATTGATTGATTGATTGGTTGGTTAATTTATTAATTTGT
TTGATTGATTGATTGATTGATTGATTGATTGATTGGTTGATGATCACACT
TGCAACCGACCGGCCCACCAATACACCAATAGTTGCCGATCCTGCTCGTG
GTCAGATGAGAAAAAATCGAGAGATCGAGAAACATCCCTACGGAATCACC
TATCTATATAGTACCAGGTACACAGGAAGAAGGAAATGGCATAAACTCTC
GGAAACATGGAACCAATATGCCCATATATAGGTGCGTATTGTGGTATCGT
CACCAGCCAATCACGTGATTCGAAATGCCTCTCGTTGACCAATGGCGTGG
CGGCAGGTGGGTGACGAACCTGTCGACGTTCGCCGGGCTTCTGTACCGCA
AGCACCCGGAAACGGAAAGCAAGGCTGTGCTCTCCTGGGCCGTGAGGTGT
CTCGGTGAAGGGGGCGAGGCGGCCATGGCCGCCGGCAAGGTACGCATTTA
CACAAATCGGGTACAGTATCTTACACAAATCGGCTACATACAGTATTTTA
CAAAAATCGGGTATACAGTGTTTTACATAAATCGGGTACAGTAAATAACA
GCTCCACAAAACATTTCAGGTATCTTACTACAGTATCTCAGAAGTGCACA
GCACAAAGTAGAAATTCAGGGCCAAATTCTGCTCAACGGTGCATTACAAT
CTATAAAAAGTTTCACACGCAGGCCCGAACACCATGCAAGAAAATGTTGT
AAAGCAGTTTTTGATTTGACATTCCAGGCGGGAGGGAAAGTTGGTGTTGG
TGGTACTACAGCATGCTTATGCTGGAGGTATGGTATGCTGTTTTTCACAT
TCGGTCCTGCTTGCCGTGTACCTACCTCCGCGTTATTGTTGTACATAGCT
TGCTGACGATCGCGCGCTCCGTGATTGCGGGTTGTCTTTGTTCTTGCCAT
ATCTATGTACTGTAGGTGGAGGCTGGCATTCGGTAATCCCAGTTGGAAAT
TGCCAATTTATTGGCGCGACGCCTGTGTGAGGTGACTTTCTTCAGGGAAG
GTTCCAGTCTGCTGCTTCTTTCCCTTCCCCGAGTCATGTGGGGCGGCCAT
TTTTTATGACAACTGTACATTTTTTTTCTTTTTTTCTTTTCCAGGGGTCT
TCGCAGTACCGGCAATTCAATTACACATGCCTTTTCACAGTACCAGCGCC
AGTTCCGGTTTTCGGTTCTGTACGGTACTGTCAGATTTCCAACCGGAACT
GGTACGGCACTGTCAGATTTTTTTTCTCCCAGCAACCGGCACTGTGAGGA
CCCCTGCTTGTTTATTTTTAGCAGATAGGCTCAAGTTGAACTCCGAGGTA
TGCCCCCTCTGTTTCCGAGAGTTAGTTTATGTCGATTCCTTATTTGTATG
ATACTACAACTATATAGGTAATTCCGTAGGTTATTTTTTTCGATCCCTCG
ATCTCTCGTGTGACCACGAGCGGGATCGGCAACCATTGGTGGGCCGGTCG
GTTGGTTGGTTGTAAGCGTGAAATCTGCTGCAGTCAATCAAGTGGATAGC
CACGGCTGTAATATGCGAAAAAAAATACGAAAAAAAACTAAATACTAGTG
TACTCTGTATGCCGTATCGATTTTTGGCATCAAAAGCTCCACACTAAAGC
CCTATCGATTTGGCATCAAGTTTCCACTCTAAATTATACGTATCAAAACG
TGGAAAGTGCTTTGAATTATTAGATGTTCTTGTGTGAACGATCGGCCGAT
GCTGTCGATGCCAACACCGATACAGATGCTCCGCGAGGTTTTGCATCAGG
CGGGAGGCGTTCAGGTTCTAGATGGGTGGAGCATCACGCAGGCCCAGGTG
GACGGAAAGGGGGGCGGTGACGTGCTGAGGACGGAGAACGCAAGCTTCGG
CTCTACCGTAAAGCCCATAAGGAGGGCTCGCCACCTGCTGCAGGTGAGAG
GCGGCGTGTGTTCACAGAAGCGCCGCTCGGTGCGGTGGTGCTGCGACGTT
AGCCTTTGTTGATGTTGATGTTGGTGGTGGGGGTGGGGAGGGTTGATGTT
GGTGTTGTTGTTGGTGGTGCTGGTGCTGGTGTGGTGCTGGTGTTGGTGCT
GATGTTAGTGATGGCGGTGATGGTGGTGTTGGTTGTACACAGCAGTAATG
AGGACCAAATCTCATGACCACGACTACCCAACTATCCCGGCCATGAATAC
AATAACATACCCAAACAGCAACAAAAGGGTCTCTCTCGTGAAGAACAACA
ACGAGGGAGATATTGCCATGTACGACAACATCGATCATGAAACCTATAGC
TCCAGCCTGTTTTTGTTGTTCTAGGTTGGGACTTGTGGCAATTTTGGACC
TGTTAAAGTTTACTATGGTATAGTCCTCCGTAATATTAATATTAATATTA
ATATGAACCCTTTTGGTACTAGCCTCTAATACTGTTTGGAGCGCCTGTTA
GCACGTAATGAGGCGTGCTAACTCCATGGGTTATGACGCAGGAATGAGAG
AGAACGGAGCGCAAGGGAAACGGGGCTGTATCTGTCGACTGGCATCGAGA
GAGTTTTTGGTCGTTTCGGAGAGCCCTATTAATACTATTAATATATACTC
ATTTAATAGTACCAAAAGGTTAATATTAATACTACAGTAGTGGTAGCGGT
ACGATAGCTGTTGTTGATAATGCTGATGCTGATGCTGATGCTGATGCTGG
TATCGGTATCGGTATTGTTGTTGGTGGTGTTGGTATTGACGGTGGTGTTG
GTGTGTACAGTAGTATTAATAGTTATGATAGCTGTTGCTGTTGGTGGTGT
ATATGGTCTCGTCGCGTTATGTAGTTTTAATAGGTGTGTTTTCGCGTTTT
CGTGTGCGCGTGCGCGTGCCGCAGACGCACACTACCTTTTGCACCGAATG
CTGTGTGCACACTCCATTCGTACGCCTTTGAAGGTTTATTTTGGTTATGT
GCGCATCTCAGCCCTGGTCGGGTCGGCCGTATTCGATCAGCGATGGGTGT
GAGGAGCAGCCAATCGATCGATCAATCCTGCTTTCCTGTGCGCAAAGGAT
AGCGAGATAGTGATCGGGACACCCTTTATATCCTCTCGCCCTGCCTCGAG
ATTTTGGGGGACGACCCAACTGGATTGCTGGCTGCTTGCGTGAAATGGCG
CACGCGCTGGTACGATGTCACTACTCGTATTAGAGCTCGGAAAAGTTGAA
ATGTTTGATGGTATCTGGCCGACTCGCATTTGTGTACACCTGGTGTTTTA
CATGCTGTTGTTTTGTCCCCAAGCGAGCGCTTCGCTTTTGTCACAAGTCG
CTCTTTCTACAAGGCGAAAACGGTGCGCGGGCCAAAACCGAGTGTAAATA
GCGACGCCAAGGATATCACCCTAAACACACTCCTTGGCCGTCCGTCCCCC
CGTACACACCTATGGAGGCTGACCTTACGTATGATGCCATGGTTTTATGT
CATGTGTGATGCTATTACATCTCATTGTACAAGCTACCCCCCCCTCCCCG
CCCGCTCCTGAAACAATAACCAATTATAAAACACACAGCGAGCGTTGGGA
TCCAATATTTTTGTAGATGAAAATATGGTCCAAGCTAACTACCTCCGCCA
AAGAGAGGTATACGAATTAGTTATTGACGGTGCTGCGTGGTCATTGTAAA
AATGGTACTATCTGGGTCGGGCTGTGGCACTACAGTACAATTTATACGTA
ACTCTGGGGATGGATTGCTTCCACCCCCCTCCCCCCCCCCGTCGCCTATC
TGACCCTACTCAGGAGAGCACGGAGAATGCTGGAGCGTCGCTTCCACTCT
TGGTTCTCCCTGCCCTCCAGACGGAGGCGTTGTTGTACGAGGGGGGCTCC
ATGGATGACCAGATGCGGGGGAAGCCGCAGCCGCACCTTAAGGTGACCTG
ATCGGCCGCATCGGAGTCTTGGGGTTAAAGTCGGCGTTTCGAGAATTTCC
TGTTGCTGTGTGCGTGGCGATGGTGGTGATGGTGATTATGATGATTATGA
TGAGTATTGTGGTGGTGATTATTATGAGTATTGTGGTGGCGATGATGATA
CTGTAGTATAGTGGACCATAGTTAACAGGTCCAAATTTTCCACAAGTCTC
AACCAAGAAATGTCCAAATAGGCTGGAATTATCGAGGTTTGAAGGTCGAG
GTTTCTTGTTTATGGCCACATCTCGTGTTTTTATTTTTCATGAGATTTCT
GTTGTGTGGGTATTTATTCATGGTCGTGATAGTTGGGTATTCTTAGTCAT
GATATTTGGTTCTGATTACTTGATTATAGTGTACCTCGGTCATAGTGATA
ATGATGATGATGCCGATGATTGTGGCGGTGTCATGGTGATGGTGATGATG
GTGAAGATAACGGCGATATTCGTTTGAAATGTGACGAATATTCGGCGAAA
ATAGACTCTAATCCTACAAACGTTATATATATACTGATACACACAAGTAA
TCCCAGTGAACGAAGAGTCGAGCACAAAATCTCTCGCGGACGAGAAACTC
TGATGGATCGCGCAAGGGCACAAGAAGCGACTGATCCCCTCGTGTGCTAA
CTTTCACGGCTCTTTTTTTTTGTTCCCCACGGGATCAGGTGCTAGGCCAC
CGGTCGGACGAGACTCACACTACGATGCTGCAGGCTACCGAGTTCGTGTG
TTTCGCCAAAACATGGATCAGGAACAAATGCCCCAGCATAGAGACTCTGG
TGAGCGCGGAGGGGGGCGGTGAGGGTATGGGGTGTGGGGGGGGAGTGCGC
TTATTGTTGAACGCTTGTCGTATCCAGATGGACATGCGCCATGCGTCCCA
ACAACGCCGGGACGGAGCGATATGCCGGGTCTTGCCTGCCGGGCTGCGTT
TTACAAGGATGGTACTGCTGTACCAGCTGCTGTAATAGTCATGATCCTAG
CGTTTGCGACACCGTTTTTATTTGCTCATTCGATTGATTGATTTTTGATT
TGATTTGATTTGATTTGATTTGATTTGCACACGTACAGCTGATCGGCTTA
ATCCGACCCGACGTGTGGTCAGACACGCAAAGAGTCGAAGAGAAAAAGAA
CTAATCAGCACTCTACTTCTACTATACATCTTACCGTCCCTTGTACTTAC
TGTGGTATAAGAAATAAGAAATAGCACCCCAGATATAGAGAAAACGCTAG
AAGAGACCTCGGACTTAAACAATGCACCCTCGCCTCTCCACAGGTCCTTT
TTTTAGCTACGGCCAGTTGCAACGCGGCAGGGACGTCACTATAAGAGTTA
GAGCAGGTGGAAAAAGAACAACAGATAGGAAATATAGAAAAAAAGGAAAG
AACACAGCTCATGTATAGCTCTAATAGCCGATCGGCTTCATTCGACCCGA
ATCGTGGTCAGGTGTGCAAAGAGCCGGTAGGAGAAAATCACTTACCAGAA
CTCTACTTCTACGACACAAGTATATAGTATTTATATCAAACGTATAAGTA
TTATTAGTATTAACAGTATCAAGTATGTAATGTCAATGTCAAGTGTACAA
AGCTTGGCCGACCAAGAAGCGCGCAAAGTATCCGCTGATCATATATTTTG
AACGGCAACGAATCAGGACAAGCTGGCCATATCGTCGCGATCGGTAGTCA
AGGCGGTCATGCACACCCCTCCAGCTCACACCGTACCGTCCCTGGTACTT
ACTATAGGCCCAAAAAAGAAGAAGCAGAATCTGGAATCGGACAATGCTCC
CTCGCCTCTCCACCAGATCCTTATTGTATTATTATACGGGCCATACCGAC
ATCTACATAACTGTTATTCGTGGCTGATTCAACTTCGTGGGTCGCTTTTG
TTCTTCGCCTCCTGCTGCCTGCCGCTGGCGATTGATACCCTCTTCGTCTG
CTTGGCTAACCCTTTGCGTACGCCGTGCCGACGGAAAAATCCGCCGCGAT
GGATCCCGTTCAGATCACCAAGTTCCGGCTGCAGCCGAGGATGGCGTTCC
ACATCTGGCGGCCCGTCATCAACGAGCACCTCATGAGGCACTGGTTCCCG
AAGGCTGGCACTAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9995:402..7416+

>mRNA_S-dermatodea_contig9995.17911.1 ID=mRNA_S-dermatodea_contig9995.17911.1|Name=mRNA_S-dermatodea_contig9995.17911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at S-dermatodea_contig9995:402..7416+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGCCGACAGCCTGCGCTTCGTGGGACACACGCTCGGCCTGGACTG
CGTGGCGTACACAATGGTGCAGCACATCTGCCAGACCAACCGGCGCTTCA
TGGACGAAAGCGGCCTCACTCTGGAAAGATGGTGGCCGACAGCCTGCGCT
TCGTGGGACACACGCTCGGCCTGGACTGCGTGGCGTACACAATGGTGCAG
CACATCTGCCAGACCAACCGGCGCTTCATGGACGAAAGCGGCCTCACTCT
GGAAAGGTGGGTGACGAACCTGTCGACGTTCGCCGGGCTTCTGTACCGCA
AGCACCCGGAAACGGAAAGCAAGGCTGTGCTCTCCTGGGCCGTGAGGTGT
CTCGGTGAAGGGGGCGAGGCGGCCATGGCCGCCGGCAAGGTGGGTGACGA
ACCTGTCGACGTTCGCCGGGCTTCTGTACCGCAAGCACCCGGAAACGGAA
AGCAAGGCTGTGCTCTCCTGGGCCGTGAGGTGTCTCGGTGAAGGGGGCGA
GGCGGCCATGGCCGCCGGCAAGATGCTCCGCGAGGTTTTGCATCAGGCGG
GAGGCGTTCAGGTTCTAGATGGGTGGAGCATCACGCAGGCCCAGGTGGAC
GGAAAGGGGGGCGGTGACGTGCTGAGGACGGAGAACGCAAGCTTCGGCTC
TACCGTAAAGCCCATAAGGAGGGCTCGCCACCTGCTGCAGATGCTCCGCG
AGGTTTTGCATCAGGCGGGAGGCGTTCAGGTTCTAGATGGGTGGAGCATC
ACGCAGGCCCAGGTGGACGGAAAGGGGGGCGGTGACGTGCTGAGGACGGA
GAACGCAAGCTTCGGCTCTACCGTAAAGCCCATAAGGAGGGCTCGCCACC
TGCTGCAGGAGAGCACGGAGAATGCTGGAGCGTCGCTTCCACTCTTGGTT
CTCCCTGCCCTCCAGACGGAGGCGTTGTTGTACGAGGGGGGCTCCATGGA
TGACCAGATGCGGGGGAAGCCGCAGCCGCACCTTAAGGAGAGCACGGAGA
ATGCTGGAGCGTCGCTTCCACTCTTGGTTCTCCCTGCCCTCCAGACGGAG
GCGTTGTTGTACGAGGGGGGCTCCATGGATGACCAGATGCGGGGGAAGCC
GCAGCCGCACCTTAAGGTGCTAGGCCACCGGTCGGACGAGACTCACACTA
CGATGCTGCAGGCTACCGAGTTCGTGTGTTTCGCCAAAACATGGATCAGG
AACAAATGCCCCAGCATAGAGACTCTGGTGCTAGGCCACCGGTCGGACGA
GACTCACACTACGATGCTGCAGGCTACCGAGTTCGTGTGTTTCGCCAAAA
CATGGATCAGGAACAAATGCCCCAGCATAGAGACTCTGATCACCAAGTTC
CGGCTGCAGCCGAGGATGGCGTTCCACATCTGGCGGCCCGTCATCAACGA
GCACCTCATGAGGCACTGGTTCCCGAAGGCTGGCACTAAGATCACCAAGT
TCCGGCTGCAGCCGAGGATGGCGTTCCACATCTGGCGGCCCGTCATCAAC
GAGCACCTCATGAGGCACTGGTTCCCGAAGGCTGGCACTAAG
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