mRNA_S-dermatodea_contig12943.1791.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12943.1791.1
Unique NamemRNA_S-dermatodea_contig12943.1791.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: A0A6H5JP79_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP79_9PHAE)

HSP 1 Score: 427 bits (1098), Expect = 1.150e-143
Identity = 207/275 (75.27%), Postives = 243/275 (88.36%), Query Frame = 1 
Query:    1 SQRWDDGQTPAQAFQELGLAMLTARDASRINSDLRAAQVKVVASRMKWVALLRETDTLLCLLNGDIPWGEAVLEITPGETMGMYWCAVCRRIGNRSGWIWRAYLRSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRM--VPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFCK 819
            S+RWDDG+TP  A ++LG++ L+ RDA+R++S LRAAQV VVASRMKW ALL+ETDTLLC++N +IPWG+AV E TP E++  +   V RR GNR+GW+WRAYLR+ VCKALA++CA LSGVILWSEV+AASRWNLSPFGILLR MY++EAG+GHALSMQA VLVPFLYMSLCCYRSLFTLRIFG+F+LQGGHH+LPGPLLFNAQYLIRLQFPLGYNFMR+LRYYGTR   VPAL LP+FQ LMNDM+TVPVLGT F VYAP++LVVLC FT+ K
Sbjct:  275 SKRWDDGRTPEDALKDLGVSRLSPRDAARLHSSLRAAQVNVVASRMKWAALLKETDTLLCIVNNEIPWGDAVCETTPEESVCHFLRTVLRRTGNRAGWVWRAYLRALVCKALALLCAGLSGVILWSEVMAASRWNLSPFGILLRLMYQQEAGIGHALSMQAAVLVPFLYMSLCCYRSLFTLRIFGTFSLQGGHHTLPGPLLFNAQYLIRLQFPLGYNFMRMLRYYGTRSASVPALSLPAFQKLMNDMSTVPVLGTGFTVYAPLVLVVLCAFTYYK 549
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: A0A835ZCR5_9STRA (LMBR1-like membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR5_9STRA)

HSP 1 Score: 195 bits (495), Expect = 9.630e-55
Identity = 107/243 (44.03%), Postives = 151/243 (62.14%), Query Frame = 1 
Query:   88 INSDLRAAQVKVVASRMKWVALLRETDTLLCLLNGDIPWGEAVLEITPGETMGMYWCAVCRRIGNRSGWIWRAYLRSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFC 816
            ++S LR  Q KVVA R +W  L+ +   L  +++  +P  ++V        +  +   V  +   R+ W WR +L   V +  AV+C VLS +++WSEV  A+  +LSPFG +++    +       L +QA  L+PFLYMSLCCYRSLF LR+  S  L G H SLPG L+FNAQYL+RLQFPLGYNF+ +L Y        LQ  +F  LM++M+ VP+LGT FN+YAP+++VVLC+FT C
Sbjct:  259 LHSRLRNGQEKVVAGRQRWEDLMNQVALLELIVSKQLPRPQSVTAGRGSNPLKRFATFVQLK-SARALWFWRLHLEHRVLRLTAVLCFVLSAMVIWSEVALAAPVDLSPFGKIIQSFEGKSP-----LLIQAAALIPFLYMSLCCYRSLFKLRLLSSLALNGPHQSLPGQLMFNAQYLVRLQFPLGYNFLTLLHYEKG----MLQHIAFNKLMSNMSVVPLLGTDFNIYAPLIMVVLCLFTAC 491
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: A0A835Z6T2_9STRA (LMBR1-like membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T2_9STRA)

HSP 1 Score: 177 bits (450), Expect = 3.830e-48
Identity = 102/245 (41.63%), Postives = 151/245 (61.63%), Query Frame = 1 
Query:   85 RINSDLRAAQVKVVASRMKWVALLRETDTLLCLLNGDIPWGEAVLEITPGETMGMYWCAVCRRIGNRSGWIWRAYLRSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFCK 819
            +++S LR  Q +V+A+  +W  L+ +   +  +++  +P  + +    PG +  +      R  G+R   +W  Y      + LAV+C  LS +++WSE   A  ++LSPFG L+  +    A     L++QA VLVPF+YMS C +RSLF L++FGSF L G H SLP  L+ NAQYL+RLQFPLGYNF+ +L   G     ALQ  +F  LM++M  VP+LGT FN+YAP+L+V+LC+FT C+
Sbjct:  328 KLHSRLREGQERVMAAWQRWQDLVDKVTCVEQIISRTLPEPQPL----PGASNYL------RAQGSRVARVWLLYAHHHFLRLLAVICLALSVMVVWSECTLAVPYDLSPFGWLIEVLDPFGA-----LAVQAAVLVPFIYMSFCTFRSLFKLKLFGSFALNGPHQSLPRQLIMNAQYLVRLQFPLGYNFVTLLGPEGG----ALQRIAFNKLMSNMAVVPLLGTDFNIYAPLLMVLLCLFTACR 553
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: A0A7S2XKF6_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKF6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 6.680e-39
Identity = 88/251 (35.06%), Postives = 137/251 (54.58%), Query Frame = 1 
Query:   67 TARDASRINSDLRAAQVKVVASRMKWVALLRETDTLLCLLNGDIPWGEAVLEITPGETMGMYWCAVCRRIGNRSGWIWRAYLRSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFCK 819
            T +  + +N+ L+ AQ  +++   +W +L++ +     L  GD+P   +  + +P  ++          +G     +W   LR  V + +A+  A+LSG +LWSE       NLSPF + L         +      Q   L+P LYMS C Y SLF L  FG + L+G + S+   L+FNAQYL+RLQFPLGYN++ +L+Y  +    A     F ++M+DM+TVP  GT F+VYAP++++ LC FT C 
Sbjct:  302 TIQHLAELNAKLQRAQATLMSMEQRWNSLVKRSRFYASLAGGDVP-DRSTSQASPSPSL---LSGSNEGVGGCMRSMWMRQLRGPVYRLMALSMAILSGTVLWSEATIGLDINLSPFALFLEAFGSSSKNI----FFQIAALIPLLYMSACVYSSLFKLSNFGPYCLRGHNQSIGVALVFNAQYLVRLQFPLGYNYLLMLKYDTSSTNCA-----FVHVMSDMSTVPFFGTSFSVYAPLMIIALCCFTLCN 539
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: A0A7S2VYF6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYF6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 8.050e-39
Identity = 80/169 (47.34%), Postives = 107/169 (63.31%), Query Frame = 1 
Query:  313 RSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFCK 819
            RS   +  A   A LSG +LWSE   +   NLSPF + LR ++  + G G ++  +   L+P LYMSLC Y SL  L  FG+FTL+G   S    LLF+AQYL+RLQFPLGYN++ +L+Y  +    A     F NLM++M+TVP LGT F+VYAP+L++ LC FT C 
Sbjct:    1 RSTTYRFAAFYAAFLSGAVLWSEATLSLSMNLSPFALFLR-LFNGDDGDGKSILFKIAALIPLLYMSLCVYSSLIKLSGFGTFTLRGHRQSHGVALLFSAQYLVRLQFPLGYNYLLMLKYDTSSTTCA-----FSNLMSNMSTVPFLGTSFSVYAPLLILCLCGFTLCN 163
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: A0A7S2A7R7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7R7_TRICV)

HSP 1 Score: 149 bits (376), Expect = 1.090e-38
Identity = 94/248 (37.90%), Postives = 131/248 (52.82%), Query Frame = 1 
Query:   82 SRINSDLRAAQVKVVASRMKWVALLRETDTLLCLLNGDI--PWGEAVLEITPGETMGMYWCAVCRRIGNRSGWIWRAYLRSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFCK 819
            +++ + L+ AQ ++V+S  +W  L+        L  G    P   A++   P  +      +V   +G    + WR YLR+   + L    AVLS ++LWSE   A  +NLSP+   L      +   G  +  Q   LVP LYMS C Y SLF L IFG F L+G   S    L+FNAQYL+RLQFPLGYN++ +L+Y       A     F  +M+ M TVP  GT F+VYAP+L++ LC FT C 
Sbjct:  122 AKLGARLKLAQAQLVSSEQRWNGLVERHQFYSELAEGATSPPGRAAIVSTAPLLSQANARLSV---MGGYVRYYWRRYLRTPFYRFLGTSAAVLSAMVLWSEATLAIPFNLSPYAGFLGAT---DGITGRGVLFQIAALVPLLYMSACVYGSLFKLSIFGPFCLRGCRQSPGVALIFNAQYLVRLQFPLGYNYLMMLKYDTASTTCA-----FSRVMSHMETVPFFGTSFSVYAPLLILALCGFTLCN 358
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: W7TPT9_9STRA (LMBR1-like membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPT9_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.110e-38
Identity = 88/244 (36.07%), Postives = 140/244 (57.38%), Query Frame = 1 
Query:   88 INSDLRAAQVKVVASRMKWVALLRETDTLLCLLNGDIPWGEAVLEITPGETMGMYWCAVCRRIGNRSGWIWRAYLRSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFCK 819
            +++ L+ AQ++V   + +  A++ + + +  +  G +P+   V +   GE       A    +G    W W   L     + LA++   L+   LWS+V   S + LSP+G      +++  G     ++Q  + VP  Y+S+C YRSLF  ++FG F+LQG H SL GPLL NAQYLIRLQFPL YNF+ +LR       P+ +  +F++LM++M  VP+LG  F+VYAP+++VVL  FT+ +
Sbjct:  343 LHARLKKAQLRVQVLKKQRDAVISKVEVIEAVCQGALPYPSDV-KAGDGEGCCAALGAWASHLGTVLAWYWLTTLSHCTLRLLAILGWFLTVCFLWSQVFLGSPYALSPYGA-----FQQAFGTSSPFAIQLAIAVPLAYVSICTYRSLFKFKLFGEFSLQGPHQSLAGPLLVNAQYLIRLQFPLAYNFLLMLR------SPSSKQTAFRHLMSNMAVVPLLGRGFSVYAPLMMVVLAAFTYFR 574
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: K0R7D7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R7D7_THAOC)

HSP 1 Score: 149 bits (376), Expect = 2.840e-37
Identity = 96/258 (37.21%), Postives = 145/258 (56.20%), Query Frame = 1 
Query:   88 INSDLRAAQVKVVASRMKWVALLRETDTLLCLLNGDIPW-GEAVLE------------ITPGETMGMYWCAVCRRIGNRSGWIWRAYLRSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFCKV 822
            ++S L  AQ  V +++++W  L+  +     L++G++   G AV +            ++P    G      C ++      +W  YLR    + +A++ AVLS  +L SEV   S+ NLSPF  L+  + E+     H +  Q   LVP LYMSL  Y SLF  +IFGS++L+G   S    LLFNAQYL+RLQFPLGYN++ +L+Y        L   +F  +M+DM+T+P LG  F+VYAP+L++ +C+FT C V
Sbjct:  340 LSSKLMDAQENVNSAQLRWDTLMEHSRLFSALMDGEVATTGGAVGDRGQGSDGSNENLLSPSSNHGS-----CGKVCYMLRRVWVRYLRFPTYRVVAMITAVLSVFVLMSEVTLGSKMNLSPFSWLVHGI-EKTDQSSHQIPFQIAALVPLLYMSLSLYSSLF--QIFGSYSLRGNRQSHGVALLFNAQYLVRLQFPLGYNYLLMLKY-------DLSHCAFGAIMDDMSTIPFLGASFSVYAPLLILAVCLFTLCDV 582
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: A0A7S4VB21_9STRA (Hypothetical protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VB21_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.990e-36
Identity = 91/250 (36.40%), Postives = 137/250 (54.80%), Query Frame = 1 
Query:   88 INSDLRAAQVKVVASRMKWVALLRETDTLLCLLNGDIPWGEAVLEITPGETMGMYWCAVCRR-------IGNRSGWIWRAYLRSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFC 816
            +++ L+ AQ KV+ ++ +W  ++ ++     L+ G  P      + +PG+  G    +           +G +   +WR +LR+   + +A+  A LS +ILW E   A  +NLSPF + L  + +   G       Q   L+P LYMS C Y SLF L  FG + L+G   S    LLFNAQYL+RLQFPLGYN++ + +Y       +    +F  LM+ M+TVPVLGT F+VYAP+L++ LC FT C
Sbjct:  324 LHARLKLAQEKVIGAQQRWEVIVEQSRFYSNLVEGSTP------QSSPGQNGGEDQQSSLPLMNEQLVPLGTKVQGMWRKHLRNPTYRLMALSTAGLSILILWCEATLAVEYNLSPFNLFLDLL-DGPNGRQKGTLFQIAALIPLLYMSTCVYSSLFKLGTFGPYCLRGNRQSHGVALLFNAQYLVRLQFPLGYNYLLMTKY-----DISFTNCAFSQLMSHMDTVPVLGTSFSVYAPLLILALCGFTLC 561
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BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Match: A0A7R9Z808_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z808_9STRA)

HSP 1 Score: 129 bits (324), Expect = 8.090e-33
Identity = 73/150 (48.67%), Postives = 94/150 (62.67%), Query Frame = 1 
Query:  370 LWSEVVAASRWNLSPFGILLRCMYEREAGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPLLFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPVLGTKFNVYAPMLLVVLCMFTFCK 819
            +WSE   A+  +LSPF + L    +RE G G  +  Q   LVP LYMS C Y SLF L +FG F L+G   SL   L+FNAQYL+RLQFPLGYN++ +L+Y  +    A     F  +M+DM TVP  GT F+VYAP+L++ LC FT C 
Sbjct:    1 MWSEGTLAAPASLSPFRLFLSAT-DREEGRG--VLFQIAALVPLLYMSTCVYGSLFKLSVFGPFCLRGYKQSLGVALVFNAQYLVRLQFPLGYNYLLMLKYDTSSTTCA-----FSRVMSDMETVPFFGTSFSVYAPLLILALCGFTLCN 142
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12943.1791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP79_9PHAE1.150e-14375.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCR5_9STRA9.630e-5544.03LMBR1-like membrane protein n=1 Tax=Tribonema minu... [more]
A0A835Z6T2_9STRA3.830e-4841.63LMBR1-like membrane protein-domain-containing prot... [more]
A0A7S2XKF6_9STRA6.680e-3935.06Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A7S2VYF6_9STRA8.050e-3947.34Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2A7R7_TRICV1.090e-3837.90Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
W7TPT9_9STRA1.110e-3836.07LMBR1-like membrane protein n=3 Tax=Monodopsidacea... [more]
K0R7D7_THAOC2.840e-3737.21Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4VB21_9STRA1.990e-3636.40Hypothetical protein n=6 Tax=Ditylum brightwellii ... [more]
A0A7R9Z808_9STRA8.090e-3348.67Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12943contigS-dermatodea_contig12943:1352..6612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.5
Seed ortholog evalue1.2e-117
Seed eggNOG ortholog2880.D7FY43
Preferred nameLMBRD2
KEGG koko:K10393,ko:K16831
GOsGO:0001726,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0005886,GO:0006810,GO:0006897,GO:0006928,GO:0006935,GO:0008150,GO:0009605,GO:0009987,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016477,GO:0030030,GO:0031252,GO:0031268,GO:0031941,GO:0032991,GO:0040011,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051234,GO:0051674,GO:0071840,GO:0071944,GO:0098657,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120036
EggNOG free text desc.LMBR1-like membrane protein
EggNOG OGsKOG2296@1,KOG2296@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size828
Cds size828
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12943.1791.1prot_S-dermatodea_contig12943.1791.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12943 1352..6612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924268.4717112-CDS-S-dermatodea_contig12943:1351..15221622924268.4717112-CDS-S-dermatodea_contig12943:1351..1522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 1352..1522 +
1694079138.3944075-CDS-S-dermatodea_contig12943:1351..15221694079138.3944075-CDS-S-dermatodea_contig12943:1351..1522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 1352..1522 +
1622924268.4832616-CDS-S-dermatodea_contig12943:2136..23461622924268.4832616-CDS-S-dermatodea_contig12943:2136..2346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 2137..2346 +
1694079138.406523-CDS-S-dermatodea_contig12943:2136..23461694079138.406523-CDS-S-dermatodea_contig12943:2136..2346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 2137..2346 +
1622924268.493703-CDS-S-dermatodea_contig12943:3091..31901622924268.493703-CDS-S-dermatodea_contig12943:3091..3190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 3092..3190 +
1694079138.4176073-CDS-S-dermatodea_contig12943:3091..31901694079138.4176073-CDS-S-dermatodea_contig12943:3091..3190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 3092..3190 +
1622924268.5067017-CDS-S-dermatodea_contig12943:5864..59541622924268.5067017-CDS-S-dermatodea_contig12943:5864..5954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 5865..5954 +
1694079138.4264038-CDS-S-dermatodea_contig12943:5864..59541694079138.4264038-CDS-S-dermatodea_contig12943:5864..5954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 5865..5954 +
1622924268.5174146-CDS-S-dermatodea_contig12943:6354..66121622924268.5174146-CDS-S-dermatodea_contig12943:6354..6612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 6355..6612 +
1694079138.4357944-CDS-S-dermatodea_contig12943:6354..66121694079138.4357944-CDS-S-dermatodea_contig12943:6354..6612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12943 6355..6612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12943.1791.1

>prot_S-dermatodea_contig12943.1791.1 ID=prot_S-dermatodea_contig12943.1791.1|Name=mRNA_S-dermatodea_contig12943.1791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=276bp
SQRWDDGQTPAQAFQELGLAMLTARDASRINSDLRAAQVKVVASRMKWVA
LLRETDTLLCLLNGDIPWGEAVLEITPGETMGMYWCAVCRRIGNRSGWIW
RAYLRSFVCKALAVMCAVLSGVILWSEVVAASRWNLSPFGILLRCMYERE
AGVGHALSMQAVVLVPFLYMSLCCYRSLFTLRIFGSFTLQGGHHSLPGPL
LFNAQYLIRLQFPLGYNFMRILRYYGTRMVPALQLPSFQNLMNDMNTVPV
LGTKFNVYAPMLLVVLCMFTFCKVGG
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mRNA from alignment at S-dermatodea_contig12943:1352..6612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12943.1791.1 ID=mRNA_S-dermatodea_contig12943.1791.1|Name=mRNA_S-dermatodea_contig12943.1791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5261bp|location=Sequence derived from alignment at S-dermatodea_contig12943:1352..6612+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTCAAAGGTGGGACGACGGCCAAACTCCCGCTCAAGCCTTCCAAGAGCT
CGGGCTGGCTATGCTCACCGCCCGAGACGCTTCCAGGATAAACTCCGACT
TACGCGCGGCGCAAGTTAAAGTCGTAGCCTCGAGGATGAAGTGGGTGGCG
CTGCTGCGGGAAACGGACACGGTCAGTGGGCATCGGCGTGTGAGAGCTGG
AGTGACGCGCGTTTCGCTCGGCTTTTGTGGGAGGGGGGAGTTCGAGCCAT
GACGGTTTCGCGCAATCCTTCAGTAGTTGGAGGTTTGCTTGGTAAATCGC
GGCCGACGATTGTGTTGAGGAGAGGGGCGTCCGCGCTGCGGGGCTGTGAG
TTGTGGACAAATGAGTGCTTTCTGGTTTTGATGATGGGAGGTCAGGGCGC
ACCCTTTTCGCCACGAGGTGGATGTCCATTTCCCTTTTCACGCCCGGGGG
CCACAATACAACACCAGCCCGTGGTGTTCCTGCCAGGTTTGCGGCGCACC
TCATGTGGAAATCGTGCGGCGATCTCAATGTGGTTGGTTCCCTGAAAAAT
ATACTGTTTCAAAGCCACAGATGGATAGAGGGAGTGTTGGGGTCGGTTCA
TCCTTTTTGAATCGAGGACAAAATATCCATGGGATTTCTGTGGAGGTCGA
CTTCATGCATGATGCCATTGTACGGGTCTGTCTCTTGTCTAGGCGACATC
TTGGTTGAAATTGTCGGAGGGTGCCCAGTATTATACAACCGTGGTTCCCC
GCTGCGCGATCGTTCCCCGTCGATATTGGTTGCAGCTGCTGTGTCTGCTC
AACGGCGACATCCCATGGGGCGAGGCGGTGTTGGAGATAACCCCCGGGGA
GACCATGGGGATGTACTGGTGCGCGGTGTGTCGGCGCATCGGCAATCGCT
CTGGCTGGATCTGGCGGGCTTACCTCCGATCGTTCGTCTGCAAAGCCTTG
GCGGTCATGTGTGCCGTTCTTAGCGGAGTCATTCTGTGGAGCGAGGTGTG
TATGATTTGGGTTGTTGGTTCGACGTGTTATATCTGCACGCTTCGTTCGG
TCACTCGGTCACTCGGTCACTCGGTCATGCGGTCACTCGGTCACGCTTCT
GAGGTTTGAAGTGGTTTGCTTGACATGTTTTGTATGGCGACGGGTGGCGT
CATGTATACCGTTGCCTTGTTCATACGAGACTCCAAGAGAGTGTATAGTA
CAGCTTGTGGCGATGGACAAGGGAGAAGTGGTACGTTGACCACCCCCAGC
GTACAAAAGCCTGCAGCACCGACGGGACTAGAGAGACCATGGAGGAATCG
ACGAGCGGACTAGAATGCTGAACCCTATACGCGATCGAAGTCGAAGGCGT
GTACCGGGAATAAGAGATGTGGAATGATTCATTGTGTCACCACAGACGGG
ATTCAGATAAGGCTGGCAAGTCACACATATAAATACAAACCAATACACTC
TCACAGGGTCCTAGGCTAGTATTTCCATCGTGGTAGGGCTGTCACCTTCG
CGCGACTGTAGTGGGATCAATCAGGCGCGAAGGGAATCCCCACGCGAGTG
CGAGCGTCTTCCGTGTTGTGTCACTCCAAGTGCTTCCGAGACATGGCCCC
CACCTACAAGTCGTATTTCTTCACTCATTGCGTCCCTGCTGCTTGCTTCA
GCGCACACAACACTGCGGGGCTCTTTTGAGTGCTGGTATGTCCACTCTCC
TGTGCTTATATTCACACAACCTTTTGTTCGGCATGCTCAGGTTGTGGCGG
CGAGTAGATGGAATCTGAGTCCCTTCGGCATCCTGCTGCGGTGCATGTAC
GAGCGGGAAGCCGGTGTAGGACACGCCTTGTCTATGCAGGTACGGTGGTG
GAATGCGTGCGAGGAGCGTCGCCGCTAAGTTTAGGGGACTTTGCCATTTT
GTGTACGGGAATAATTGTTCGAACAACATATTAGAACCCAAAAAATTGTT
GATAACTTATTTGTTTGGTAAGCGCTGGCACGGCGCTCCGGGCGTCGACC
CAGCCACCCTGACCCTACCCGTAAGCCCAACCCAATCCTCCCTCAAAACC
GTCACCCGAGGCCAAATTTTCTTAACGGCCATTCCGACCACATTCCGACC
ACGGACTGTCAGCTTTGGCCAGTAAAAACCGCGAGAAATTGCTTCGTCTA
CAATGTGTCGAAGTCTATCGACTAAGTTCCCGGTCAGTAACGCTCATTAA
TACAGTCAGTATGGCACATGTCAGGCGTTTCCGTAATTTTCCCCGCGACA
AGAATCGATTCAAACCTAAGGATGGGTGTAACGTTTTAAATATCCAACCA
ACACCGTAAAAATGCTGGTCTCGAGGCGGAGATGCCTACTATGATAGTAG
GGAATCATTTATTTTTTTATTCGAAGCTTTCCAACAAAGTTTCCAAACTT
TTAATTTGTTTCTTTGTCCTGGGCACTCTTTAGGTTGTCAATTTGAGACC
TTTTTGGGGCGCGTCTTGACTTTCCCGACTTTGGGCAAATTTCAGAATCG
AAAAATAATGAAAATAAACTTCGACACATTTTCCATGAACCATTTTTTCC
GGGGGGGGGGGGGGGGGATTTCAATATTATTTTGCTCCAAATCGAAACCC
TAACTTTTTTTATGCAAAAAGCCGCAAACGACGGATCTCGCTCAGGTCGA
CTGTGGGCAATCGCCGGATTAAAGAATACGTATCCGGAACTCGAGAAAAG
TGTTCCTGCGCTTTGCCTCGCATGGGAGTCAACGTCGTTGCTACCTTGGC
GGCCTTCAATCTGCACGAAGCATGCCGAAAAACAGCAGGGGACGTCAAGA
AAAGTCACTAGCGTTTGCCCGCGAGGCTTGAGCCCGCTCGAATAGCAAAG
CGCGCGCGGTGCTGCTGCTTGCGTGGACCAAAAAGCATGAAACAAGCAAC
CCGGCTTTTCTAAAGTGACACGCTCTGGCCGTAGGTAGAGCGTGCGCATA
TGCTTTAATGTGTTTAATGTAGGGGTGTATTTGCCAACTACCTGCGTTCG
TCGGAGAGGTGAGGTGTGTGTCTGATATATATGTGTGTATGCGAGCGCGC
GAGCACGGGTGCTTGTAGGGGGCGCGCCTATGGCCGGCTCCGGACGGTCA
CATATAATGTACAAATTATACAATGTGTGCATACGCCTCAATGTGCAATT
GAAGCGTGTGTTAATATAATATGTGTGCGTGTGTTTGCGTGCGCGGGTAC
GTACACGTGTGTGTGTGGAATGGTCGTGTGTTGCAGCATGCCTCTGGCCT
TTGAGACTCCCCACATGCGTTTTTCGAGTGAGTTTTGACAGCTTTTGGGC
ATAAAACCCACAGCAGAATGACGTCAACGCCACCAGAAAATATCAAATGT
TGCGTGCCCCCCCCCCCCGGATTATTCGGGTTCTTCTCGACAAGGCAATC
ACAACCGAGGTTGCTTTGGTTTGCGGACACGGTCTTGTTCAAAATTTACT
TTATAGCGATACCCAAATTACGGGAATTACCTTACACGTACCATAGCATA
TTTATTTCCCGAGTACGCACTCCAGCAAAGCCATGCACGTATGTATTTAT
TTCAGGTGTTCGCCTTGCATATGTAGGTGCAGGTGGGCGCCGTTTTCCGA
TTAGTTAACAGCACGGCTTTTGACCACTCTAGCACATGCTGACCCGCGTC
ACGTCCGTGTCGGACTCTCCTGTTGCTGAGAGGCGTTGCCATGCATGTAC
TGTATTGTACTACTGTATTACGGAGGTACTGTACATAGTAATCAGGATCA
GGATCAGGATCAGGACCCAAGGTCTCCTCAATAGTGTCGCGTAGTCAAGT
CCTGTGTTTGAACGTTGGCCGACAACACCTTGTATTGTATCTATACTTTT
AATACTAGGTAGCCACGGCTATGCCCGTGAGGTGCAAGATCCTACCGTTT
CCAACACTTGGCGCTCATAATAAACATCAAGTTGTTTAGGGTCACTTTTT
CCTATAGGATTCCGGTGACACAATGTTGTCCTCTAAAATCGTTGTTAACA
ATCGGTCAAAGCGCTATTAATTATTGAAGATATTTTTTTTTGACATTTCA
GGCCGGAAGATTGCAGATTGATGTTGTATGATAAGGCCAGACTGTATTGA
TTTATGGTATGTTATGTTGGGTATAATTTTGGCACATTTACTCCTGAGTA
CTATGATACTGATTGCCGTGAAGCCTGCTTGCGGAGTCCAGTTGTTTTGG
TCCGTATGTTCTGGGAGAGCATTCGTCGAACGAAGGCCCTAGGCACACCC
TGCAAGTGCCCTTGTTCGTTTCAAAATTTTGATGTTTGCCGGACATACAG
CTCCAGCGGAGACCCACGCCATGTCTGCAGCGCGATCGCCGAAACCCAGC
AACTGCTTAATACTCAACCACGAAAACCGACGTCTCGAAACGCGAAACTC
ATCTGGAACGAGTTTCAACGATCCGAGGCTGCGAGGGGCGCAAAAAACCG
CAGGCAGCCCTCCCTTGTTCTTTTGTCCTCGATTGTTTTGGTGCTGGGTG
ATGGGGTGGTCAGGCGGTGGTCCTGGTGCCGTTCCTGTACATGAGCCTCT
GCTGCTACCGCAGCCTTTTCACTCTCCGCATCTTCGGCTCCTTCACTCTG
CAGGTACGCTACGGACAAACCAACGCTTACCCCGTATAACACCAACCGCC
ACCCTACATGAAAAAGTTCGCATCATAGCGCGTGTCGGTATAATAGCGTT
GGACGAATGCTTCCCGTGGCCCCCCCCCCCCCCCCCCGAGTTTGGCAACG
GTGATACCATAGACTGCGAAGTGCTGTAGCCTAATCACCGGCCTCCAACA
ACCGCGAGATCCTTCCACTCGCAACAACACCACTGGCAAGTACTCTTGCT
GGCAGGGGAAGACAGTGCGTGCGGGCATGTCAATATAGATCCATCCAAAC
TCTCGACGGCGTTGATAACAGGGAGATCGCTTTGTGGCAGGACGAATTGT
GACACCAAAACTCGCCAGCCCTAACGCGCGACCGCCGCACCGCTTTTCTG
CAGGGCGGACACCACTCTCTCCCGGGGCCGCTGCTGTTCAACGCGCAGTA
CCTGATTCGGCTCCAGTTTCCCCTCGGCTACAACTTCATGCGCATCCTGC
GGTACTATGGGACGAGGATGGTGCCGGCGCTCCAGCTGCCGTCGTTCCAG
AACCTGATGAACGACATGAACACGGTGCCCGTGCTGGGGACGAAGTTCAA
CGTTTACGCTCCCATGCTGCTAGTGGTGCTGTGCATGTTTACGTTCTGCA
AGGTGGGCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12943:1352..6612+

>mRNA_S-dermatodea_contig12943.1791.1 ID=mRNA_S-dermatodea_contig12943.1791.1|Name=mRNA_S-dermatodea_contig12943.1791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at S-dermatodea_contig12943:1352..6612+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTCAAAGGTGGGACGACGGCCAAACTCCCGCTCAAGCCTTCCAAGAGCT
CGGGCTGGCTATGCTCACCGCCCGAGACGCTTCCAGGATAAACTCCGACT
TACGCGCGGCGCAAGTTAAAGTCGTAGCCTCGAGGATGAAGTGGGTGGCG
CTGCTGCGGGAAACGGACACGAGTCAAAGGTGGGACGACGGCCAAACTCC
CGCTCAAGCCTTCCAAGAGCTCGGGCTGGCTATGCTCACCGCCCGAGACG
CTTCCAGGATAAACTCCGACTTACGCGCGGCGCAAGTTAAAGTCGTAGCC
TCGAGGATGAAGTGGGTGGCGCTGCTGCGGGAAACGGACACGCTGCTGTG
TCTGCTCAACGGCGACATCCCATGGGGCGAGGCGGTGTTGGAGATAACCC
CCGGGGAGACCATGGGGATGTACTGGTGCGCGGTGTGTCGGCGCATCGGC
AATCGCTCTGGCTGGATCTGGCGGGCTTACCTCCGATCGTTCGTCTGCAA
AGCCTTGGCGGTCATGTGTGCCGTTCTTAGCGGAGTCATTCTGTGGAGCG
AGCTGCTGTGTCTGCTCAACGGCGACATCCCATGGGGCGAGGCGGTGTTG
GAGATAACCCCCGGGGAGACCATGGGGATGTACTGGTGCGCGGTGTGTCG
GCGCATCGGCAATCGCTCTGGCTGGATCTGGCGGGCTTACCTCCGATCGT
TCGTCTGCAAAGCCTTGGCGGTCATGTGTGCCGTTCTTAGCGGAGTCATT
CTGTGGAGCGAGGTTGTGGCGGCGAGTAGATGGAATCTGAGTCCCTTCGG
CATCCTGCTGCGGTGCATGTACGAGCGGGAAGCCGGTGTAGGACACGCCT
TGTCTATGCAGGTTGTGGCGGCGAGTAGATGGAATCTGAGTCCCTTCGGC
ATCCTGCTGCGGTGCATGTACGAGCGGGAAGCCGGTGTAGGACACGCCTT
GTCTATGCAGGCGGTGGTCCTGGTGCCGTTCCTGTACATGAGCCTCTGCT
GCTACCGCAGCCTTTTCACTCTCCGCATCTTCGGCTCCTTCACTCTGCAG
GCGGTGGTCCTGGTGCCGTTCCTGTACATGAGCCTCTGCTGCTACCGCAG
CCTTTTCACTCTCCGCATCTTCGGCTCCTTCACTCTGCAGGGCGGACACC
ACTCTCTCCCGGGGCCGCTGCTGTTCAACGCGCAGTACCTGATTCGGCTC
CAGTTTCCCCTCGGCTACAACTTCATGCGCATCCTGCGGTACTATGGGAC
GAGGATGGTGCCGGCGCTCCAGCTGCCGTCGTTCCAGAACCTGATGAACG
ACATGAACACGGTGCCCGTGCTGGGGACGAAGTTCAACGTTTACGCTCCC
ATGCTGCTAGTGGTGCTGTGCATGTTTACGTTCTGCAAGGTGGGCGGGGG
CGGACACCACTCTCTCCCGGGGCCGCTGCTGTTCAACGCGCAGTACCTGA
TTCGGCTCCAGTTTCCCCTCGGCTACAACTTCATGCGCATCCTGCGGTAC
TATGGGACGAGGATGGTGCCGGCGCTCCAGCTGCCGTCGTTCCAGAACCT
GATGAACGACATGAACACGGTGCCCGTGCTGGGGACGAAGTTCAACGTTT
ACGCTCCCATGCTGCTAGTGGTGCTGTGCATGTTTACGTTCTGCAAGGTG
GGCGGG
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