mRNA_S-dermatodea_contig9989.17907.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9989.17907.1
Unique NamemRNA_S-dermatodea_contig9989.17907.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: D7FZK5_ECTSI (AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK5_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 4.000e-116
Identity = 180/183 (98.36%), Postives = 182/183 (99.45%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            IRKLTYLQMLGYDMSWAAFYVIEVM MPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLAN+ATPGL+RDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV
Sbjct:   47 IRKLTYLQMLGYDMSWAAFYVIEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 229
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: A0A835Z6U0_9STRA (Clathrin/coatomer adaptor, adaptin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U0_9STRA)

HSP 1 Score: 293 bits (751), Expect = 6.080e-95
Identity = 141/183 (77.05%), Postives = 162/183 (88.52%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            +RKLTYLQM+GYDMSWAAF VIEVM   RF HKRVGYLAANQ FTE+T+V+LL TNHL+KEF S N YD+GLAINCLAN+ATP L+RDL+ D+  LL + + YVRKKALL MYKLFI YPQGLRL FDRI++RL+D+DS VVSCAVN+ICELADKNP+NYLA+AP+FFRLLTTSSNNWMLIKV
Sbjct:   47 VRKLTYLQMIGYDMSWAAFSVIEVMTSARFGHKRVGYLAANQTFTEETDVILLTTNHLKKEFNSGNQYDIGLAINCLANIATPDLSRDLLGDVSALLTHQRSYVRKKALLVMYKLFINYPQGLRLCFDRIRDRLDDTDSGVVSCAVNIICELADKNPRNYLALAPRFFRLLTTSSNNWMLIKV 229
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: A0A397A277_9STRA (Adaptin_N domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A277_9STRA)

HSP 1 Score: 276 bits (705), Expect = 4.250e-89
Identity = 130/183 (71.04%), Postives = 159/183 (86.89%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            IRKLTYL M GYDMSWAAF+ +EVM+  RFAHKR+GYLAA+Q FT++T+VVLLCTN  +KEF S N Y+VGLA+N +AN+ T  LARDL+ D++ L+ +HKPYVRKKA L +YKLF++YPQGLRL+FDR+KER+E+ D SVVSC+VNVICELA+K PKNY+ +APQFFRLLTTSSNNWMLIKV
Sbjct:  151 IRKLTYLNMQGYDMSWAAFHTVEVMSYERFAHKRIGYLAASQSFTQNTDVVLLCTNLFKKEFGSVNEYEVGLALNAMANICTLDLARDLLGDILNLMNSHKPYVRKKATLILYKLFLRYPQGLRLSFDRLKERMEEPDVSVVSCSVNVICELANKKPKNYVGLAPQFFRLLTTSSNNWMLIKV 333
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: A0A397D649_9STRA (Adaptin_N domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D649_9STRA)

HSP 1 Score: 276 bits (705), Expect = 1.160e-88
Identity = 130/183 (71.04%), Postives = 159/183 (86.89%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            IRKLTYL M GYDMSWAAF+ +EVM+  RFAHKR+GYLAA+Q FT++T+VVLLCTN  +KEF S N Y+VGLA+N +AN+ T  LARDL+ D++ L+ +HKPYVRKKA L +YKLF++YPQGLRL+FDR+KER+E+ D SVVSC+VNVICELA+K PKNY+ +APQFFRLLTTSSNNWMLIKV
Sbjct:   47 IRKLTYLNMQGYDMSWAAFHTVEVMSYERFAHKRIGYLAASQSFTQNTDVVLLCTNLFKKEFGSVNEYEVGLALNAMANICTLDLARDLLGDILNLMNSHKPYVRKKATLILYKLFLRYPQGLRLSFDRLKERMEEPDVSVVSCSVNVICELANKKPKNYVGLAPQFFRLLTTSSNNWMLIKV 229
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: A0A7S1FY82_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY82_9STRA)

HSP 1 Score: 266 bits (681), Expect = 2.120e-88
Identity = 130/183 (71.04%), Postives = 155/183 (84.70%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            +RKLT+LQM+GYDMSWA+F VIE+M+  RFAHKRVGYLAA Q FTEDT+V+LLCTN L+KE  S   Y+ GLA+NCL+N+ T  LARDL+SDL  L  +  PYVRKKA+L ++KLF+KYPQGLRLTFDRI++ L DSD SVVSCAVNVI EL+DKNPKNYL MAPQFF+LLT+S+NNW LIKV
Sbjct:   14 LRKLTFLQMMGYDMSWASFPVIEIMSSTRFAHKRVGYLAATQGFTEDTDVILLCTNLLKKELLSTEVYEAGLAVNCLSNIVTEDLARDLLSDLTVLTQHSAPYVRKKAILGLFKLFMKYPQGLRLTFDRIQQCLNDSDPSVVSCAVNVITELSDKNPKNYLVMAPQFFQLLTSSTNNWTLIKV 196
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: A0A0P1A8R1_PLAHL (Ap-3 complex subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8R1_PLAHL)

HSP 1 Score: 272 bits (696), Expect = 1.010e-86
Identity = 130/183 (71.04%), Postives = 158/183 (86.34%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            +RKLTYL MLGYDM WAAF+V+EVM+  RFAHKR+GY AA Q FT+ T+VVLLCTN L+KEF S + Y+VGLAIN LAN+ T  LARDL+ D++ ++G+ KPYVRKKA L +YK+F++YPQGLRL+FDR+KER+E+ D +VVSCAVNVICELA+K PKNYL +APQFFRLLTTSSNNWMLIKV
Sbjct:   47 VRKLTYLHMLGYDMCWAAFHVVEVMSYERFAHKRIGYNAACQSFTQSTDVVLLCTNLLKKEFGSTSEYEVGLAINVLANIVTTDLARDLLGDVLAMMGSPKPYVRKKATLVLYKMFLRYPQGLRLSFDRLKERMEEPDVTVVSCAVNVICELANKKPKNYLGLAPQFFRLLTTSSNNWMLIKV 229
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: A0A812VEC3_SYMMI (AP3D1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VEC3_SYMMI)

HSP 1 Score: 264 bits (674), Expect = 2.000e-86
Identity = 124/186 (66.67%), Postives = 159/186 (85.48%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQ---NPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            +RKLTY+QM+GY++SWA+F ++EVM+  RF HKR+GYLAANQ FTE T++++L TN  +KEF +Q   N Y++GLA+NCLAN+A   LARD +SD+V LL + +PY+RKKA++ ++KL+IKYPQGLRLTFD + E+L DSD SVVSCAVNVICELA KNPKNYL+MAP+FF+LLTTSSNNWMLIKV
Sbjct:   57 VRKLTYIQMMGYNVSWASFSIMEVMSQARFEHKRIGYLAANQSFTESTDILMLTTNLFKKEFSAQSSRNHYEIGLAMNCLANIANKDLARDCMSDVVSLLDHSRPYIRKKAVICLFKLYIKYPQGLRLTFDSLMEKLNDSDGSVVSCAVNVICELARKNPKNYLSMAPKFFKLLTTSSNNWMLIKV 242
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: F0YKL7_AURAN (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKL7_AURAN)

HSP 1 Score: 274 bits (700), Expect = 6.030e-86
Identity = 128/183 (69.95%), Postives = 159/183 (86.89%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            +RKLTYLQM+GYD+SWA+F ++E M+  RFAHKR+GYLAA QCF+E T+VVLL TN L+KEF+S + Y+VGLA+NCLAN+ T  LARDL+ D V L+ + KPYVRKKA+ +M+KLF+KYPQGLRLTF+++KERL D + +V SCAVNV+CELA+KNP NYL+MAPQFFRLLTTSSNNWMLIKV
Sbjct:   38 VRKLTYLQMMGYDVSWASFAIVETMSQARFAHKRIGYLAACQCFSESTDVVLLTTNLLKKEFQSTSQYEVGLAVNCLANIVTKDLARDLLQDSVLLMSHSKPYVRKKAVSSMFKLFVKYPQGLRLTFEKLKERLADGEPAVTSCAVNVVCELANKNPNNYLSMAPQFFRLLTTSSNNWMLIKV 220
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: A0A3R6XGB3_9STRA (Adaptin_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XGB3_9STRA)

HSP 1 Score: 276 bits (705), Expect = 1.910e-85
Identity = 130/183 (71.04%), Postives = 159/183 (86.89%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            IRKLTYL M GYDMSWAAF+ +EVM+  RFAHKR+GYLAA+Q FT++T+VVLLCTN  +KEF S N Y+VGLA+N +AN+ T  LARDL+ D++ L+ +HKPYVRKKA L +YKLF++YPQGLRL+FDR+KER+E+ D SVVSC+VNVICELA+K PKNY+ +APQFFRLLTTSSNNWMLIKV
Sbjct:  199 IRKLTYLNMQGYDMSWAAFHTVEVMSYERFAHKRIGYLAASQSFTQNTDVVLLCTNLFKKEFGSVNEYEVGLALNAMANICTLDLARDLLGDILNLMNSHKPYVRKKATLILYKLFLRYPQGLRLSFDRLKERMEEPDVSVVSCSVNVICELANKKPKNYVGLAPQFFRLLTTSSNNWMLIKV 381
[Close]
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Match: W4FU07_9STRA (AP-3 complex subunit delta n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FU07_9STRA)

HSP 1 Score: 276 bits (707), Expect = 6.950e-85
Identity = 130/183 (71.04%), Postives = 159/183 (86.89%), Query Frame = 1 
Query:    1 IRKLTYLQMLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIKV 549
            IRKLTYL M GYDMSWAAF+ +EVM+  RFAHKR+GYLAA+Q FT++T+VVLLCTN  +KEF S N Y+VGLA+N +AN+ T  LARDL+ D++ L+ +HKPYVRKKA L +YKLF++YPQGLRL+FDR+KER+E+ D SVVSC+VNVICELA+K PKNY+ +APQFFRLLTTSSNNWMLIKV
Sbjct:   47 IRKLTYLNMQGYDMSWAAFHTVEVMSYERFAHKRIGYLAASQSFTQNTDVVLLCTNLFKKEFGSVNEYEVGLALNAMANICTLDLARDLLGDILSLMNSHKPYVRKKATLILYKLFVRYPQGLRLSFDRLKERMEEPDVSVVSCSVNVICELANKKPKNYIGLAPQFFRLLTTSSNNWMLIKV 229
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9989.17907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZK5_ECTSI4.000e-11698.36AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z6U0_9STRA6.080e-9577.05Clathrin/coatomer adaptor, adaptin-like protein n=... [more]
A0A397A277_9STRA4.250e-8971.04Adaptin_N domain-containing protein n=3 Tax=Aphano... [more]
A0A397D649_9STRA1.160e-8871.04Adaptin_N domain-containing protein (Fragment) n=5... [more]
A0A7S1FY82_9STRA2.120e-8871.04Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A0P1A8R1_PLAHL1.010e-8671.04Ap-3 complex subunit n=1 Tax=Plasmopara halstedii ... [more]
A0A812VEC3_SYMMI2.000e-8666.67AP3D1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
F0YKL7_AURAN6.030e-8669.95Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A3R6XGB3_9STRA1.910e-8571.04Adaptin_N domain-containing protein n=1 Tax=Aphano... [more]
W4FU07_9STRA6.950e-8571.04AP-3 complex subunit delta n=1 Tax=Aphanomyces ast... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9989contigS-dermatodea_contig9989:245..4765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.7
Seed ortholog evalue2e-94
Seed eggNOG ortholog2880.D7FZK5
Preferred nameAP3D1
KEGG koko:K12396
KEGG Pathwayko04142,map04142
GOsGO:0000041,GO:0002376,GO:0002475,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006900,GO:0006903,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008057,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008340,GO:0008565,GO:0009058,GO:0009605,GO:0009893,GO:0009987,GO:0010008,GO:0010256,GO:0010259,GO:0010468,GO:0010604,GO:0010628,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016182,GO:0016192,GO:0016197,GO:0016482,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019748,GO:0019882,GO:0019884,GO:0021700,GO:0022407,GO:0022409,GO:0030001,GO:0030117,GO:0030119,GO:0030123,GO:0030154,GO:0030155,GO:0030424,GO:0030705,GO:0031090,GO:0031410,GO:0031503,GO:0031982,GO:0031984,GO:0032438,GO:0032501,GO:0032502,GO:0032594,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033059,GO:0033060,GO:0033267,GO:0033365,GO:0034613,GO:0035646,GO:0036465,GO:0036466,GO:0042440,GO:0042441,GO:0042592,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043679,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044550,GO:0045184,GO:0045202,GO:0045580,GO:0045582,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046634,GO:0046635,GO:0046637,GO:0046638,GO:0046903,GO:0046907,GO:0047496,GO:0048003,GO:0048007,GO:0048066,GO:0048069,GO:0048072,GO:0048193,GO:0048475,GO:0048489,GO:0048490,GO:0048499,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0050931,GO:0051094,GO:0051136,GO:0051138,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0060255,GO:0060966,GO:0060967,GO:0060968,GO:0060969,GO:0061024,GO:0061088,GO:0061462,GO:0065007,GO:0065008,GO:0070142,GO:0070727,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072511,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080171,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098830,GO:0098930,GO:0098943,GO:0099003,GO:0099111,GO:0099504,GO:0099514,GO:0099517,GO:0099518,GO:0099532,GO:0099632,GO:0099637,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902105,GO:1902107,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990019,GO:2000026
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1059@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size549
Cds size525
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9989.17907.1prot_S-dermatodea_contig9989.17907.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9989 245..4741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.0472367-CDS-S-dermatodea_contig9989:244..4581622925442.0472367-CDS-S-dermatodea_contig9989:244..458Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9989 245..458 -
1694079936.3215647-CDS-S-dermatodea_contig9989:244..4581694079936.3215647-CDS-S-dermatodea_contig9989:244..458Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9989 245..458 -
1622925442.060417-CDS-S-dermatodea_contig9989:1930..20641622925442.060417-CDS-S-dermatodea_contig9989:1930..2064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9989 1931..2064 -
1694079936.3397274-CDS-S-dermatodea_contig9989:1930..20641694079936.3397274-CDS-S-dermatodea_contig9989:1930..2064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9989 1931..2064 -
1622925442.074694-CDS-S-dermatodea_contig9989:3873..40051622925442.074694-CDS-S-dermatodea_contig9989:3873..4005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9989 3874..4005 -
1694079936.352327-CDS-S-dermatodea_contig9989:3873..40051694079936.352327-CDS-S-dermatodea_contig9989:3873..4005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9989 3874..4005 -
1622925442.0875537-CDS-S-dermatodea_contig9989:4696..47411622925442.0875537-CDS-S-dermatodea_contig9989:4696..4741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9989 4697..4741 -
1694079936.3640122-CDS-S-dermatodea_contig9989:4696..47411694079936.3640122-CDS-S-dermatodea_contig9989:4696..4741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9989 4697..4741 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925442.10269-UTR-S-dermatodea_contig9989:4741..47651622925442.10269-UTR-S-dermatodea_contig9989:4741..4765Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9989 4742..4765 -
1694079936.375612-UTR-S-dermatodea_contig9989:4741..47651694079936.375612-UTR-S-dermatodea_contig9989:4741..4765Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9989 4742..4765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9989.17907.1

>prot_S-dermatodea_contig9989.17907.1 ID=prot_S-dermatodea_contig9989.17907.1|Name=mRNA_S-dermatodea_contig9989.17907.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=175bp
MLGYDMSWAAFYVIEVMAMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHL
QKEFKSQNPYDVGLAINCLANVATPGLARDLISDLVQLLGNHKPYVRKKA
LLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPK
NYLAMAPQFFRLLTTSSNNWMLIKV
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mRNA from alignment at S-dermatodea_contig9989:245..4765-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9989.17907.1 ID=mRNA_S-dermatodea_contig9989.17907.1|Name=mRNA_S-dermatodea_contig9989.17907.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4521bp|location=Sequence derived from alignment at S-dermatodea_contig9989:245..4765- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTCGGAAGCTCACGTACTTGCAGATGCTCGGGTACGACATGAGCTGGGC
GGCATTTTACGTCATCGAGGTGCGTCGATCGGTATATTGTTATGTTTTGG
GGGCGCGCGGGGGGGGGGGGGGGGGGGGGGGTACACACCAAAGCTACACT
ACCAGAATATCGCTCAGGACAAAGACACTTGTACCATGATCCTAATAACA
TAATTTCATAAACATCGAAACTATAGCGTAGCATCATACACAACGTAAGC
CTCCATAGGTGCGTTTAACAGCTTGGACCACCTTCCCTTCTAAAAAAGGC
GGTACCCCAAACGCTCGCTCCACGTATTTGAAAATCAGGCTATTTTTGGA
AGGAGGGCGGTGTACGATGTTGTTCGCGGGTGTGTGGGTTTGTGTTGTTG
AGGGTTCTGGTTTCGAAAAAATGTACCAGGTAATACATAGAGCTATCGTA
GCAATTGTAGCCGTTTCGCGCTGCCGGTGGTGTCTCTGTTGTACTGATTT
GTTGTTGTGCTTTCTCGTGTCCTGTTCATCGGTAGAGAGTTATTCAAGTC
CTGCCTGCTTCAAGGCCCATTTCGTAACCGTAGCCGCGCGCGATCCCGCG
CGACCGCGCGCGCTGGGAAGCCCGGGTCGCAGTCCATCACTTCTGTCCGC
TTTAATGACACTCTTTTTCGTGCACGCACAAAATCCAGCCGGTTGGGTGG
TAAGACAGCCCTCCTCCGCGCGCGCCTGGCGACACGCCCCCACTCCCTCC
CTCCCTGCAGGTGATGGCCATGCCGCGGTTCGCGCACAAGCGGGTGGGTT
ACCTGGCGGCGAACCAGTGCTTCACGGAGGACACCGAGGTGGTGCTGCTG
TGCACGAACCACCTACAGAAGGAGTTCAAGTCGCAGAACCCGGTAAGTAT
TAATAGGTGTTTTTTTGTATTTGTTCGGTGGGGCGCGTGCGCGCGCGCGC
GCCCGCCGGTGGAGACTCTTGTCAATGTTCCTACGTGGATTGGTTGTTTT
GTTGATTGATTGATTGATTGATTGATCGTCACACATGCAGCCGATCGGTC
TCTCCACTCTGATCCCGGTCTGGGTCGCAAAAAAGGTACTGTACACACCG
AAGGTACAAGTACACACACGGACGACCCCGACCCCACCAAACTTGGCATC
CACGCATACACACGACGAGATAAAAAATATTTTTTGTACCCAAGAGCCAG
CCAGCCCCAAACGAAGAATATAAAATGCCTAAAAAATACTGTAGAGCGAC
ATCTATCTGACTACAGTACAGCTTGCATGTCATGTCTTGATCAGTAATCC
GACATCTTCCTTCAACATGTATGTAACTCTGTTGTCTGCGTGAAGCGCTT
GCTTAGATCCACACAGCAGTAAAGCAGCAGTGTCTTGTTACCTGTTTACT
GCTTGGGCCCAACAAAACTGCATGCTCTGCGTACCGAAGAATATAAATAT
ACGAAACCTGCATCGCATCGCCGTCTCTGATAATAAGGCTGCCCCCAAGT
CCCGCGCTAGAAACCAGGCAAAAAGAAGTCAAAGGACGCCAAGCATTTGA
GTAACCCTTTCTACAACTACATACGACTCATGATAAAGATGCCAACAACA
CCTCTTCTTTACATCTCGGGGACTGCGCCTACCCACGTGGACGACTAGAA
AGAGTGTGAAGTTAGGTGCTGTATATGGTGAGCTGCACCAGTATATTCCT
TGAGGGGAGGGGCGGGTCACCAGCCGGACAGGCAGAAGGGCTCAAAATCA
AGGCAAAATAAAAATTCCAACACAAGTATGTACGACAAAGTTATGTATAC
TGGTAGATTTGATTGATTGATTGATTGATTTGATTTGCACCCGTATAGCC
GATCGGCTTAATCCGACCTATCCGACTTGTGGTCAGACACGCAAAGAGTC
TGTAGAGACAAGTAAATATTCTTGGCTCACAAAGCGCATAAAAAAAGCTA
CCTTACTAGGAACCAGGATATCTCTCAGGACAAAGGACGCTCGTGCCATG
ACCCTATGGCACCATACATGACATATGACATGGCATGAACTCATAGCATC
ATACGCAACGCACGCGAGCCTCCCAATGAGATAGGGGTACAAGTAGCTTG
GGCCATCTCATCTTCCCTCTTCGAAAAGATGGAACCCCAACGCTCGCTCT
GCAAGTGTTGTGTCTTTTGAAGTATTTTTGTTTTTGAAGGGGGGGGCATG
TCGCCTTTGCCCCTCGTGCTCGAAACCTCAAAGGCATGCCCGTACAAGGT
ATTGATTTTCCCCCTGAATCGCCTTATCGTATCATTTGCGCTCCACGCCA
CGCTGTTAAGTTGAGGATGTGTAAAGATCTCGCCTCGCTCTCGTGCATGT
CGCCATGTTTGGCTCTTGTTTCGCACTGGTGTGCCTGTTGTTCTGTGTTT
TTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTT
TATTTAATTATTTAATTATTTTTTTTCGTTCCGCGATTACACAGTNNNNN
NNNNNCCTTTTATTTTTTTCTTTTTTTTCCTCCCCCCTTCTTTTTTTTTT
TTTTTTTTTTTTTTGTTTTTTTTTTTGTTCTTGTTTGCTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTATATTTGTTTATTTGTATATTTGTTT
ATTTATTTATTTAATTATTTAATTATTTTTCATCGTTCCGCGATGACACA
GTACGATGTTGGGCTGGCCATCAATTGTCTGGCGAACGTCGCGACGCCGG
GGCTGGCTCGCGACCTCATCAGCGACCTCGTGCAGCTCTTGGGCAACCAC
AAGCCGTACGTGCGGAAGAAGGCGCTGCTGGCGATGTGAGGAAGGATTTT
TGTTTTGTTTTCTCTCTTCTTCTTCTTCTTCTTCTTTTTCTTTCTTTCTC
TCTCTTTCTTTTATTTTAATTTATTGTTTTTCTCCATTTTGTTGGGTGCC
TTTGGCTCTTTTCTCCCCGGCTCGCCAAATCACAGAAAAAAAAAGTTTAT
GGAATGTACGTTGTACGTGTTAAGGTTAGGGTGGGTTATGTGGGTATGTA
TGTGTTATTCAGAGTGCCGTGTCTCATCGGGTGTGTATGTAGGTGTGTAC
GAGTGTGCGTGTATTTTGTTTTTTTCGGGTTGCTGCTGCTGCTGCTGCGT
GTTGTTGTGCTGGTTTGTTTTTTCGAGCTCGCTAATATACTAGGTAGTGT
TTGTGAAATGTTTCTGTGTACTTTTAAACTAATTTTGCCGTTGTCGAGAT
TTGCTCCAGCTGCAAGGTACTTGTAGTATTGTGTGTGTGTTGCTTTTTGA
GGAAAAAACAAATGCTTTGCTTTTTTATCCCAAGATACAAAACATTCAGA
TCCTCGCTGTCTCTTTTTTTTTTTTTTTTTTGCCCCCCTGCTTTGCCTCT
CTCATACATGTGTGATATGCCTTCTTCGCCGTAAACAAAAAAACACAGCG
GCCATGATAACACGCGTGCGCGCAAGCAAGCAAGCACACGCTCACGCCCG
GGTTCGAATCCGGGCAAGGGCCGATTTTTATGTATTGTCTCTTTACCTCC
GCCGCGGAAAGCGCGAGAGCGTGAGTTCAGCAAAAAAATACGAGAAATCG
GCGAGCTGAGGGAGTGCCGAACCCAATGCATTCGCGATTAAAAAAAACTA
AGGTATGCTAAGAACATACCGGCGGTAAGAGAGATGGGATGATTGATCCC
TCGTGAGCACAGACGAACCTCGAAAACGCCGGTCTATCATACTTTTTTTT
ACTTTTTTTACTTTTTTTACTTTTTTTTTGGCACACATATGACAGACCTT
CTTTTCCGAGGTCCATCTGTGGTCACAAGGGATCATCCCATCTCTCTTAT
CCTTGGTTCTCTGATTTTTGTCGCGCATTGGGTTCGGCAGTCCCGCAGCT
CGCCGATTTATGGGATTTTGCTTACTCACGCTCTCTCGCTTTCCGCGGAG
AAGGTAGAGAAAATAAAGAAATATTGACTCTGCCGGGATTCGAACCCCGA
TCCNNNNNNNNNNCAGCTCGCCGATTTATCGTATTCTGCTTACTCACGTT
CTCGCGCTTTCCGCGCCGCGGTGGAGGTAGAGAAAATAAAGAAATATTGA
CTCTGCCGGGATTCGAACCCCGGTCCTCCGCTTACTGGGCTGTTGGTCAC
CAGTTTAACCACGGGGCGCGCGGATACTATGTGAGCAAAAAAATATATAT
ATACTTCGAAGTATATATATATACTCCCTTCACCGCTCCTGCTGCTCCCT
CTGCCTTTCTCTGGCCGCCGGCCGCCGGTCACCGCCTACGCTGGCGCTAC
CGTGCAGGTACAAGCTGTTTATCAAGTACCCGCAGGGGCTGCGGCTGACG
TTCGACCGGATCAAGGAGCGCCTCGAGGATTCCGACAGCAGCGTGGTGAG
CTGCGCGGTGAACGTCATCTGCGAGCTGGCGGACAAGAACCCGAAGAACT
ACCTCGCCATGGCGCCGCAGTTCTTCCGCCTCCTGACCACGTCTTCCAAC
AACTGGATGCTCATCAAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9989:245..4765-

>mRNA_S-dermatodea_contig9989.17907.1 ID=mRNA_S-dermatodea_contig9989.17907.1|Name=mRNA_S-dermatodea_contig9989.17907.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at S-dermatodea_contig9989:245..4765- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGGGTACGACATGAGCTGGGCGGCATTTTACGTCATCGAGATGCT
CGGGTACGACATGAGCTGGGCGGCATTTTACGTCATCGAGGTGATGGCCA
TGCCGCGGTTCGCGCACAAGCGGGTGGGTTACCTGGCGGCGAACCAGTGC
TTCACGGAGGACACCGAGGTGGTGCTGCTGTGCACGAACCACCTACAGAA
GGAGTTCAAGTCGCAGAACCCGGTGATGGCCATGCCGCGGTTCGCGCACA
AGCGGGTGGGTTACCTGGCGGCGAACCAGTGCTTCACGGAGGACACCGAG
GTGGTGCTGCTGTGCACGAACCACCTACAGAAGGAGTTCAAGTCGCAGAA
CCCGTACGATGTTGGGCTGGCCATCAATTGTCTGGCGAACGTCGCGACGC
CGGGGCTGGCTCGCGACCTCATCAGCGACCTCGTGCAGCTCTTGGGCAAC
CACAAGCCGTACGTGCGGAAGAAGGCGCTGCTGGCGATTACGATGTTGGG
CTGGCCATCAATTGTCTGGCGAACGTCGCGACGCCGGGGCTGGCTCGCGA
CCTCATCAGCGACCTCGTGCAGCTCTTGGGCAACCACAAGCCGTACGTGC
GGAAGAAGGCGCTGCTGGCGATGTACAAGCTGTTTATCAAGTACCCGCAG
GGGCTGCGGCTGACGTTCGACCGGATCAAGGAGCGCCTCGAGGATTCCGA
CAGCAGCGTGGTGAGCTGCGCGGTGAACGTCATCTGCGAGCTGGCGGACA
AGAACCCGAAGAACTACCTCGCCATGGCGCCGCAGTTCTTCCGCCTCCTG
ACCACGTCTTCCAACAACTGGATGCTCATCAAGGTGGTACAAGCTGTTTA
TCAAGTACCCGCAGGGGCTGCGGCTGACGTTCGACCGGATCAAGGAGCGC
CTCGAGGATTCCGACAGCAGCGTGGTGAGCTGCGCGGTGAACGTCATCTG
CGAGCTGGCGGACAAGAACCCGAAGAACTACCTCGCCATGGCGCCGCAGT
TCTTCCGCCTCCTGACCACGTCTTCCAACAACTGGATGCTCATCAAGGTG
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